rna313, rna313 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna313
Unique Name	rna313
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1836
Alignment location	CM002455.1:772436..775420 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein kinase, ATP binding site
Orig transcript id	gnl\|cribi\|Naga_100026g2.10636.mrna
Orig protein id	gnl\|cribi\|Naga_100026g2.10636
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:772436..775420 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g2	gene302	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna313	rna313-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30382.1	cds313	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:772436..775420+
coding sequence from alignment at CM002455.1:772436..775420+

mRNA sequence

>rna313 ID=rna313|Name=rna313|organism=Nannochloropsis gaditana|type=mRNA|length=1836bp
ATGACAAGCAAACCCTTTAACCTTCATCTCTTTGACGATCGAATCGCAAT
AGAGCGCACTGACTCGGGCGCTGCTTTAATCATCTCAAGAAGTGTGCCTG
AGGCGCCTCTGGAAGCTTATGTAGACGAACGAGGCAAGGTTTCGAGAGAG
ACGGCGGGTGGTCAGCTTATCCCCGTGGATGCCCTTTTCGGAATCTACCA
CCTTCTCTCGGGCCCGTACATGGTGCTTGTTACGGACTCGGAAGTAACGG
TGGCATTGGGGGACGGGATAGAGTTTCGCAAGGTAGCAAAAGTCGCTGTC
CTCCCATTAATCAAGAACAATGTACCCCTCACGGAGGAGAAGCAGGCAGA
CGAGGATCGGTACTTGGAGCTTCTGCACCTCGCCATTTCCAGCCACAATT
TCTACTTTAGCCTGAACCACGATGTGACGCAAACCCTCCAGCGCCTCTCG
GGCGTGTCGCCCGAGGACAGGGTCAAGAAGCCGCTCTGGCAGCGGGCGGA
CGACCGCTTTTTCTGGAACAGAGACGTGGTTGGAGAGCTTGTGGCCGCAA
AAGCGCACGAATGGATTGTGCCTATGATGAATGCCTACGTGGACCTCCGA
CAGAACTGTAGCGCAGGCTCGCACCGGTTCCATCTGCTCTTCATTTCGAG
GCGCTCTCGGCACAGGCAGGGGTGTCGTTTCACCATGCGGGGGGCCGACG
AGGAGGGGCGCGTCGCGAATTTTGTGGAGACGGAGCAGGCACTCTTGCAC
GAGGACGGGCGTCAAACGGCGCTGGTACAGGTCCGAGGCTCCATCCCTCT
GCAGTGGCACTCGCCGGTCTCCCTCAAGTACACACCGCGGGTATTCTTCG
GGGAGGCGGCCACGGGGCAGGCGGCGGCGCGAAAGCACGTGGAGGAGCTG
GTAGAGCTATACGGGCCGGAAGGCGTTGTTTTCGTGAACCTCGTGAACAT
GAAGAAGGACGAGCAGGCTCTGGGCATCCGCTTCAAGCAAGCCATCGACG
AGCTTCAGAGCAAGGTCCTGCGGTACGTCTGGTTTGATTTTCACCACGAA
TGCAAGAAGATGCGTTACGGAAATCTGGCAAAACTTCTGCAGGAGGTGGA
AACCGAATTTCAGAAGCAGTCTTTTTTCGCGCGGGCGGCGGACGGCTCGG
TCACGCATCTCCAAAAGGGCGTGATTCGCACCAATTGCTTGGACAACCTG
GATCGAACCAATGTCGTGCAGAGCATCATCGCACGTCGATCACTCCTTGT
ACAGCTGAAAGAGAAGGCCGCACTTGCCTTGGACGGAGCTCATGTACTAG
AGACCCCGTTTCCGTCGTTTGAAAAGGTCTTCAAAGACGTGTGGGGGAAC
AACGCAGACGCTATGTCTGTCCTCTACTCAGGAACCGGCGCTCTCAAGAC
AGACTTTACCCGAACTGGCAAGCGTACTATCAATGGCGCTTTACAAGACG
GTGTAAATTCTGTGATGCGATATTACAAAAACAATTTTATCGATGCCACG
CGTCAAGACGCCTTGGACCTGATGCTCGGCCGCTTCAGGCCCGACCCAGC
CCTGCCTTCCCCTTTTCTCTACCCGCCTGCGACCCAAGGAAAGCTATCGT
CTTTTATGACCAAAGTGTTTGTCATTTTGGTGGCCGTTTTCTCAATCGCC
ATGGTCCTGAAACCTGAGGAGGAGGTGCTGCCCCAGTTATTCCTCGGCTC
CCTGCTCATCACGTTCCTAGTCCTCATCCTCATGGCGCGACACCTTGTAA
CCAAAGGTGGAAAGATTGGCAAGGAACTCGTCGCCAAACCCAGACTTGTC
CCAGAGCCCTACATCTACAGCTTTTATTCAGCCTGA

protein sequence of rna313

>rna313-protein ID=rna313-protein|Name=rna313|organism=Nannochloropsis gaditana|type=polypeptide|length=599bp
MTSTPPSSSAGLSPPPTPPASAPGLASGVKRVFVDDDVGNGVALQLLGKR
MRPPEAAGTQIPTQRVWMDVGPVTKISVHPPPMPSSRGRDVPGPPSESGL
ALKKVPPPPPPAPPMSAMAASTNPSSAKLSQAVRIQSEGGGEPEEGDGEL
EEGELEDGEVEEGHSAPLGLEADHSVPARRRRPSSPTTPSCPAQRRTLLP
KSPSPASAASPSPSPPPPRPCAGKFDSRGFKGSSTKASAAGGSLLLPPDK
VAPLPPLLGPPPQYGRSVAAFRRREMIGKGTYGEVSRAVDKDTGETVALK
KMSLTLPGEANQKEGLAVTALRELKVLQKLRHKNVVALKEVVTEHGRSHI
PHEVYLVLEYCESDLAGIVRTCSLLGVHIRSYTYQILAGLAYIQRHGLLH
RDLKTANILVTRNHLVKIADWGLCRWEPERERARLTNPVVTLWYRAPELL
LGTAKYGKAVDMWSCGAIFVELLTGKPFVEGRDELDQLARVFDVCGTPAY
DGQYTGPRFVRRTPRLAEELRRRGVRDEKAIALAEQLLAVEPKKRPSADA
AADDDYFWSPDEAGNFHAPSDDPASLPRLVSFRSGVDMDDLHEWNVKRR

mRNA from alignment at CM002455.1:772436..775420+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna313 ID=rna313|Name=rna313|organism=Nannochloropsis gaditana|type=mRNA|length=2985bp|location=Sequence derived from alignment at CM002455.1:772436..775420+ (Nannochloropsis gaditana)
GTGTGCGGATGTGAGGGGATGACGAGCGCAAAAAACGTCCAGGCACACAA
GGGGGGTCGCCATCTTGCCATGCGCGCATCCAGCGAGGCCGGCGGGCGAG
TCCTGGCACTTATGTCCTCGAGACCCATGCCTCCATTGCGACGCCGGTCA
CCGCCTGCCTTTGGCTCCATGCatcaccctcccctcgccctcctagCTCT
CCTCTTAAGCAGGCGTTGAACCTCGTTTCGTCCCTTAATTGGGTCATGCA
GTGAGACATCGTTGGctgcgaggacgaggtgcaGGTGAGACTGGTGGTGG
CTAGCTacagacagggaggggacgcgATCCTTTCTCGGCATGACGGCACG
AGTGCGAGGCAGTCCTCTGTGTGTGAGCAAGACACGGTGCCTGTACGGCT
GTATGAAGGTTTCCGCTTGTGTGCATTCTCATTTGACGCCTTCTTTTACG
GCGTTGAATTCCTAGAATTCTTGTGGGGAGCCGTGCCGCTGGTGTCCAGC
ACATCATACCCCCACGTTCGGCACGGTCATTCCGCTTTTTTGACTCGTTC
TTTGCATCCATCGAGTGTGTTGCGtgcaaggaggagcgcgtcttttcgcc
tcctccgccccccggggCTGTGGCGGCAGTGAGGCGGTATGActtccacg
cctccctcgtcttccgccGGCCTCTcacccccacccaccccgcccgcgtc
ggcTCCCGGCCTCGCAAGTGGTGTCAAGGTATgtgtggaaagagggatAA
GCTCTGATGTCTTGCCACGGTACCTTACATCGCACGCCCGCTTTCGCTCT
GTCGCAGCGCGTGTTTGTTGACGATGATGTGGGCAACGGGGTGGCACTAC
AGCTACTGGGCAAGCGCATGCGGCCTCCTGAGGCAGCCGGAACTCAGATT
CCGACGCAACGGGTATGGATGGATGTTGGTCCGGTGACAAAAATCTCTGT
TCACCCGCCTCCAATGCCGTCGtcaaggggcagggacgtgCCTGGCCCCC
CTAGCGAGAGCGGGCTGGCGCTCAAGAAAgtaccgccaccaccaccaccc
gcgCCGCCAATGTCGGCCATGGCGGCTTCAACAAATCCTTCAAGTGCAAA
GCTGTCTCAGGCGGTGCGAATCCAatcagagggggggggtgagccggagg
agggggatggtgagctggaggagggcgagttggaggatggcgaggtcgag
gaggggcatAGCGCCCCGCTCGGCCTCGAAGCAGACCATTCTGTTCCTGC
ACGCAGGAgacgcccctcctcccccaccaccccctcctgccccgcccagc
gccgcaccctcctccctaagtcgccctccccggccagcgcggcctccccc
tccccctcccctccccccccgcgaCCCTGCGCTGGGAAATTTGATAGCCG
CGGATTTAAAGGCAGCAGCACAAAAGCATCCGCAGCGGGCGGTagcttgc
tgctgcctccgGACAAGGTggcccctctgccccccttgcTGGGGCCCCCG
CCGCAGTATGGTCGGAGCGTAGCCGCGTTCCGAAGGCGGGAGATGATCGG
AAAGGGAACTTACGGGGAAGTGTCGCGGGCGGTGGACAAAGATACTGGAG
AGACCGTCGCTCTGAAGAAAATGAGCCTCACGCTCCCCGGCGAGGCGAAT
CAGAAAGAGGGGCTGGCCGTGACCGCCCTACGGGAGCTGAAGGTGCTGCA
GAAGCTTAGGCACAAGAACGTGGTGGCTTTGAAGGAGGTAGTGACCGAGC
ACGGCCGGTCGCACATCCCGCACGAGGTGTACCTGGTCCTCGAGTACTGC
GAGTCCGACCTGGCGGGCATCGTCAGGACGTGCTCTCTCCTCGGCGTGCA
CATCCGCAGCTACACCTACCAGATCCTGGCGGGGCTCGCCTACATCCAGC
GGCACGGTCTCCTGCACCGGGACTTGAAGACTGCCAACATTCTGGTGACT
CGCAACCACCTGGTCAAGATCGCGGACTGGGGCCTCTGCCGGTGGGAGCC
GGAGCGGGAACGTGCCCGCCTGACGAATCCAGTGGTCACCCTGTGGTACC
GGGCGCCGGAGCTCTTGCTTGGGACGGCGAAGTACGGCAAGGCGGTGGAC
ATGTGGTCGTGTGGGGCCATATTTGTTGAGCTCTTGACGGGTAAGCCTTT
CGTAGAGGGCCGCGATGAGCTGGACCAGCTGGCCAGAGTCTTCGACGTCT
GTGGCACGCCCGCCTACGACGGGCAGTACACGGGTCCCCGCTTCGTGCGT
CGCACTCCTCGCTTAGCGGAGGAGCTGCGTCGGCGGGGTGTGCGGGACGA
GAAAGCCATCGCTCTTGCCGAGCAGCTTTTGGCTGTGGAGCCTAAAAAGA
GGCCTTCGGCGGACGCGGCGGCTGACGATGACTACTTCTGGAGCCCCGAC
GAGGCGGGCAATTTCCACGCTCCAAGCGATGACCCGGCCTCGCTGCCACG
CCTGGTGTCCTTCCGCTCCGGCGTAGACATGGATGACCTGCACGAATGGA
ACGTGAAGCGGAGATGAGCATAGAGGTGGTCCAcgacggaggtggaggag
ggaagctgcgtgaggggtgggagggcggggagtggAAGTTTGGGAGAAAG
TGGTCTCGAGGTGGCAGTGCGTTCTGCATGCCGCACAATGAAGGGCTGTG
GAGATAAGAGATGGCAGTCGTAAGAGCACTGGCACCTGTCAGACAAGAAG
TTGTACGGTTTTGACATGAGCTTTCACTATGTAGTTGAGTGGAtgcggcg
gaagagaggTAGAGTGAGCTGCCCGAAGTGCGGACTGATTGCTTTTCAAA
TTAAAAAGATGTACTTGTAGTGATGGAGGGAACATATGGGTAGAAATTGA
GACAATATCCTGCGTTTGGGCATTGGTGCGTGCGGTGTCAGCGTCAAAGA
GCCGTCCGCCTGAAATGAGGCCGAACAAGGAACGGGGAAAATGAAAGAAG
TAGAAAACCACAAAAGAAAGCCGTCGGTCTTTACC

Coding sequence (CDS) from alignment at CM002455.1:772436..775420+

>rna313 ID=rna313|Name=rna313|organism=Nannochloropsis gaditana|type=CDS|length=3600bp|location=Sequence derived from alignment at CM002455.1:772436..775420+ (Nannochloropsis gaditana)
ATGActtccacgcctccctcgtcttccgccGGCCTCTcacccccacccac
cccgcccgcgtcggcTCCCGGCCTCGCAAGTGGTGTCAAGCGCGTGTTTG
TTGACGATGATGTGGGCAACGGGGTGGCACTACAGCTACTGGGCAAGCGC
ATGCGGCCTCCTGAGGCAGCCGGAACTCAGATTCCGACGCAACGGGTATG
GATGGATGTTGGTCCGGTGACAAAAATCTCTGTTCACCCGCCTCCAATGC
CGTCGtcaaggggcagggacgtgCCTGGCCCCCCTAGCGAGAGCGGGCTG
GCGCTCAAGAAAgtaccgccaccaccaccacccgcgCCGCCAATGTCGGC
CATGGCGGCTTCAACAAATCCTTCAAGTGCAAAGCTGTCTCAGGCGGTGC
GAATCCAatcagagggggggggtgagccggaggagggggatggtgagctg
gaggagggcgagttggaggatggcgaggtcgaggaggggcatAGCGCCCC
GCTCGGCCTCGAAGCAGACCATTCTGTTCCTGCACGCAGGAgacgcccct
cctcccccaccaccccctcctgccccgcccagcgccgcaccctcctccct
aagtcgccctccccggccagcgcggcctccccctccccctcccctccccc
cccgcgaCCCTGCGCTGGGAAATTTGATAGCCGCGGATTTAAAGGCAGCA
GCACAAAAGCATCCGCAGCGGGCGGTagcttgctgctgcctccgGACAAG
GTggcccctctgccccccttgcTGGGGCCCCCGCCGCAGTATGGTCGGAG
CGTAGCCGCGTTCCGAAGGCGGGAGATGATCGGAAAGGGAACTTACGGGG
AAGTGTCGCGGGCGGTGGACAAAGATACTGGAGAGACCGTCGCTCTGAAG
AAAATGAGCCTCACGCTCCCCGGCGAGGCGAATCAGAAAGAGGGGCTGGC
CGTGACCGCCCTACGGGAGCTGAAGGTGCTGCAGAAGCTTAGGCACAAGA
ACGTGGTGGCTTTGAAGGAGGTAGTGACCGAGCACGGCCGGTCGCACATC
CCGCACGAGGTGTACCTGGTCCTCGAGTACTGCGAGTCCGACCTGGCGGG
CATCGTCAGGACGTGCTCTCTCCTCGGCGTGCACATCCGCAGCTACACCT
ACCAGATCCTGGCGGGGCTCGCCTACATCCAGCGGCACGGTCTCCTGCAC
CGGGACTTGAAGACTGCCAACATTCTGGTGACTCGCAACCACCTGGTCAA
GATCGCGGACTGGGGCCTCTGCCGGTGGGAGCCGGAGCGGGAACGTGCCC
GCCTGACGAATCCAGTGGTCACCCTGTGGTACCGGGCGCCGGAGCTCTTG
CTTGGGACGGCGAAGTACGGCAAGGCGGTGGACATGTGGTCGTGTGGGGC
CATATTTGTTGAGCTCTTGACGGGTAAGCCTTTCGTAGAGGGCCGCGATG
AGCTGGACCAGCTGGCCAGAGTCTTCGACGTCTGTGGCACGCCCGCCTAC
GACGGGCAGTACACGGGTCCCCGCTTCGTGCGTCGCACTCCTCGCTTAGC
GGAGGAGCTGCGTCGGCGGGGTGTGCGGGACGAGAAAGCCATCGCTCTTG
CCGAGCAGCTTTTGGCTGTGGAGCCTAAAAAGAGGCCTTCGGCGGACGCG
GCGGCTGACGATGACTACTTCTGGAGCCCCGACGAGGCGGGCAATTTCCA
CGCTCCAAGCGATGACCCGGCCTCGCTGCCACGCCTGGTGTCCTTCCGCT
CCGGCGTAGACATGGATGACCTGCACGAATGGAACGTGAAGCGGAGATGA
ATGActtccacgcctccctcgtcttccgccGGCCTCTcacccccacccac
cccgcccgcgtcggcTCCCGGCCTCGCAAGTGGTGTCAAGCGCGTGTTTG
TTGACGATGATGTGGGCAACGGGGTGGCACTACAGCTACTGGGCAAGCGC
ATGCGGCCTCCTGAGGCAGCCGGAACTCAGATTCCGACGCAACGGGTATG
GATGGATGTTGGTCCGGTGACAAAAATCTCTGTTCACCCGCCTCCAATGC
CGTCGtcaaggggcagggacgtgCCTGGCCCCCCTAGCGAGAGCGGGCTG
GCGCTCAAGAAAgtaccgccaccaccaccacccgcgCCGCCAATGTCGGC
CATGGCGGCTTCAACAAATCCTTCAAGTGCAAAGCTGTCTCAGGCGGTGC
GAATCCAatcagagggggggggtgagccggaggagggggatggtgagctg
gaggagggcgagttggaggatggcgaggtcgaggaggggcatAGCGCCCC
GCTCGGCCTCGAAGCAGACCATTCTGTTCCTGCACGCAGGAgacgcccct
cctcccccaccaccccctcctgccccgcccagcgccgcaccctcctccct
aagtcgccctccccggccagcgcggcctccccctccccctcccctccccc
cccgcgaCCCTGCGCTGGGAAATTTGATAGCCGCGGATTTAAAGGCAGCA
GCACAAAAGCATCCGCAGCGGGCGGTagcttgctgctgcctccgGACAAG
GTggcccctctgccccccttgcTGGGGCCCCCGCCGCAGTATGGTCGGAG
CGTAGCCGCGTTCCGAAGGCGGGAGATGATCGGAAAGGGAACTTACGGGG
AAGTGTCGCGGGCGGTGGACAAAGATACTGGAGAGACCGTCGCTCTGAAG
AAAATGAGCCTCACGCTCCCCGGCGAGGCGAATCAGAAAGAGGGGCTGGC
CGTGACCGCCCTACGGGAGCTGAAGGTGCTGCAGAAGCTTAGGCACAAGA
ACGTGGTGGCTTTGAAGGAGGTAGTGACCGAGCACGGCCGGTCGCACATC
CCGCACGAGGTGTACCTGGTCCTCGAGTACTGCGAGTCCGACCTGGCGGG
CATCGTCAGGACGTGCTCTCTCCTCGGCGTGCACATCCGCAGCTACACCT
ACCAGATCCTGGCGGGGCTCGCCTACATCCAGCGGCACGGTCTCCTGCAC
CGGGACTTGAAGACTGCCAACATTCTGGTGACTCGCAACCACCTGGTCAA
GATCGCGGACTGGGGCCTCTGCCGGTGGGAGCCGGAGCGGGAACGTGCCC
GCCTGACGAATCCAGTGGTCACCCTGTGGTACCGGGCGCCGGAGCTCTTG
CTTGGGACGGCGAAGTACGGCAAGGCGGTGGACATGTGGTCGTGTGGGGC
CATATTTGTTGAGCTCTTGACGGGTAAGCCTTTCGTAGAGGGCCGCGATG
AGCTGGACCAGCTGGCCAGAGTCTTCGACGTCTGTGGCACGCCCGCCTAC
GACGGGCAGTACACGGGTCCCCGCTTCGTGCGTCGCACTCCTCGCTTAGC
GGAGGAGCTGCGTCGGCGGGGTGTGCGGGACGAGAAAGCCATCGCTCTTG
CCGAGCAGCTTTTGGCTGTGGAGCCTAAAAAGAGGCCTTCGGCGGACGCG
GCGGCTGACGATGACTACTTCTGGAGCCCCGACGAGGCGGGCAATTTCCA
CGCTCCAAGCGATGACCCGGCCTCGCTGCCACGCCTGGTGTCCTTCCGCT
CCGGCGTAGACATGGATGACCTGCACGAATGGAACGTGAAGCGGAGATGA

Synonyms

Publications