rna3127, rna3127 (mRNA) Nannochloropsis gaditana

Overview
Namerna3127
Unique Namerna3127
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1798
Alignment locationCM002460.1:783754..785629 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100015g32.6349.mrna
Orig protein idgnl|cribi|Naga_100015g32.6349
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:783754..785629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100015g32gene3005Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27533.1cds3119Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3127rna3127-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3127 ID=rna3127|Name=rna3127|organism=Nannochloropsis gaditana|type=mRNA|length=1798bp
GACATGTGCAAGAGAGATCCTGCATGTCCGTAGGCACAGAGTCTGGCTTT
CTGTGCTTAAGATCGTGCGGCGATTGCATCACTTATCTCGTGGCCCCTTT
CCCTGCTCACTTTTTGATTTTTCTCATCTGAAAATTACACCATAGGGACG
ACAGCAGTGGGCAAAATGTCTCCGCAAGGCACATTGCTGGGATTGTAACA
CTGTAGCAAAGAACATTATGGGACCCCAATCTTCACGAGGAGCCCAAAAA
GAGGGATGCGGGACTGGACACAACGTGCTTTGGTGGTGCAACCAGGACCC
GTGTGGAGTGGTGTGTGCCGGCGTGACCTGGAGTTTGATATTGTACGCTC
AGTACACCATCAATAAGATAGTGATATTCGGGTGGATGGGCGTGCTATCT
CTATGGGGTTTTCTAAACGTAACTGCCTTCAATGCCACAGCCTGCCTGGC
TATAATTTCCCATGTCCGGGCCATGACGACAGACCCCGGCGCAGTGCCTC
GAAACGCACTCCCGCTGGCTGATGACCCGGAGGTGCAGGCAAACGGACAG
GAAGGGACCGGCACCAATGGTGTCGCCATGGATGAAGGAAGACTCTCTGG
ATCCCATGATGGGGTCCTGGGTAATGCAGGCATGGGAGGCAATCCCCGAG
CGCGCGTTCGCAAGTTTTGCCGTCGGTGTAATGCATTCAAGCCCCCGCGC
GCTCACCATTGCAGCATTTGTCGTCGTTGCGTGGTCAAAATGGACCACCA
CTGCCCTTGGGTCAACAACTGCGTGGGCATCGGGAACCACAAGCTCTTCT
TGCTCTTCATCTTCTACGTCTTCATCATGTGTACCTACGCCTTGACGCTT
GTGCTGGTCAGGTACGCGGGATGTATCGGAGAGGAGGACGCCGAAGGCTG
CGACGATATGGCCGGGAATTTGTTGGTGGTGTTCCTGGTGATGGAGGCAG
TCCTCTTCGGCCTTTTCACTTGCTGCATGATGCTCGATCAGTGGACGGTT
GTCTCTACAAATACGACGGCCATCGACCGCTTAAAGGGCCAGTACCACGC
CGTATCGACCTCCGTGGGTAGAGCTGACGTGAACGAGGTGTTCGGGGGCA
AGGAGGGCAGGAGGATCCGGTGGCACTGGTTGTGGCCGTCGGCGGCCCAC
TTTCCCGGCTCGGTGTTGAGCGATTTGTTGGGGTACAGGGTAGAAGACGG
CGAGGGCATGGCCCTGGAGGAAGGCAGAAGCGAGGAAGCGCGGGACGCGG
AGGAATGCCGGGAGGCGGACGAGGAGTCTGGCATCCTCCTGCTTGATCGA
CGCCGACGGGCCAGCTCGAGCTCACGGGAAGACATGGTGGGTCCGGTGAC
TGTCTTCGAGGACTCGCTCCCTCCAAGTATCCACGGTACCGGAGCTACCC
ATCGGAGCAACTGGAGCAGCCGCGCATCCATGCCCAGCAAGCGCGTCCCA
ACCCAGGCGAGCAGAGGCAAAGGACAAGGGCTCGAGGGAATGAGCGCGGG
AGAGGTGGGAGCGCCTCTCTCGGAGGGGCCGCCGGAGCGCTTTGGCGTCT
TGTGGCATCCAGGATCGGCGTGATAGTAGCTTTAAGGGGAGGGATAGGGT
ATATCTTGGAATGTATAGTGTACCGGGTTGATTTGAGATGTAAACAAGTC
AGCGCATTGCGACCGTGTCTTGACGAACGTGTTGGTAGGAGAAGGCTTTT
AACAAAAAACAGATAAAGCATATCGGCGAGGACTGAAGGCCCCCGAAAGC
GAAATACCTTTATCATGCATGGCATACAGTTATTTTCAAGTATCGTTC
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protein sequence of rna3127

>rna3127-protein ID=rna3127-protein|Name=rna3127|organism=Nannochloropsis gaditana|type=polypeptide|length=494bp
MLWLLVICLSVPGARTFRLPVTRSSEPLTKDTPRHLRSVCENNFSSFPHF
CPGLYVSFPHTCRFGGVRYPRCRTAPSPPTCLRQALQFHDPLKPPWLALL
KADHKLKQATVKAAGNMAQDYELSPSLEPKIARKKFVASLVVGIGASMTL
LASICFRTMPLGKRAFLSIAPLAATLLPYFLCVARGLPLVNVGSWRSLNA
IGHRLGGIGALLLPLVLVVREALTNTHAPGLLYGVTVATILMNLLFGVAL
IPSRFPAYDIPAARGLAVGTLYGLAFLGWSTTFRFGGQAWYAPIGRLSAL
VAAYAVAFSWSDAGQNIRCWRRGMYKTKLGRKWYLPFERSSLTQVFGSNL
WRQPSADALDASLMTAWQGCAPTVFVALLGSSALLQLPYLLWGSAYTRSL
TMACPALTRWATYQALAAVAANNFATFLVTLVVHSRLPLHHVAFYNVLVP
LIPTLNIAAFCWRYPGMNIPLILQLLLRPPGAGCVQAMPAAWLS
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mRNA from alignment at CM002460.1:783754..785629-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3127 ID=rna3127|Name=rna3127|organism=Nannochloropsis gaditana|type=mRNA|length=1876bp|location=Sequence derived from alignment at CM002460.1:783754..785629- (Nannochloropsis gaditana)
CGTTAGATTCGGCGAAGGCAAAGCAGAACAAACCGAATCGGACAAAGACA
CACGTCCAGAAGGTACTGGCGCAGTTTTCTCACTCATGACGACGTATCTG
CGCATCACCGAACAGACTGGACACTGCGTGGTTACTGTGGCGTCTCACTC
AGAGCTCGCAGATGCTATGGCTGCTCGTCATCTGCCTAAGCGTCCCTGGT
GCGCGGACTTTCCGATTGCCGGTGACCCGCTCCTCAGAGCCCTTGACAAA
GGATACTCCCCGCCATTTGCGCTCCGTATGCGAGAATAATTTCTCATCCT
TTCCACATTTCTGTCCTGGATTATATGTGTCATTTCCGCATACGTGTCGG
TTCGGTGGAGTGCGGTATCCACGGTGCCGGACTGCGCCATCTCCCCCCAC
ATGCCTTCGACAGGCGCTTCAATTCCACGACCCTTTGAAGCCACCGTGGC
TAGCACTTCTAAAAGCTGATCATAAGTTAAAGCAGGCAACAGTGAAAGCA
GCTGGCAACATGGCTCAAGATTACGAATTGTCGCCTTCACTGGAGCCTAA
GATCGCACGAAAAAAGTTTGTAGCAAGTTTGGTAGTCGGGATAGGGGCTT
CCATGACACTGCTTGCGTCCATCTGCTTTCGTACCATGCCTTTGGGGAAG
CGGGCATTTCTCTCCATCGCCCCTTTGGCAGCGACCTTGTTGCCATACTT
CCTGTGTGTGGCCCGAGGGTTACCTTTGGTGAACGTGGGAAGCTGGCGGT
CACTTAATGCAATCGGACATCGACTGGGGGGCATCGGCGCTTTGCTCTTA
CCGCTTGTCCTTGTCGTTCGGGAGGCATTGACTAACACACATGCGCCTGG
ACTATTGTACGGTGTCACGGTGGCTACAATTCTAATGAATCTTCTGTTCG
GCGTCGCCCTGATTCCCAGTCGCTTCCCCGCCTACGATATTCCTGCTGCT
CGCGGACTGGCTGTAGGCACTCTGTACGGACTAGCATTTTTGGGGTGGAG
CACGACCTTTCGTTTTGGCGGCCAGGCGTGGTACGCGCCAATAGGGAGGC
TCTCTGCTTTAGTAGCTGCATATGCCGTTGCATTTTCCTGGAGTGATGCT
GGTCAGAACATTCGATGCTGGCGGCGGGGGATGTATAAGACAAAACTAGG
CCGGAAATGGTACTTGCCTTTCGAACGCTCTTCGCTCACTCAAGTCTTTG
GGAGCAATTTGTGGCGACAGCCGTCGGCGGACGCTTTGGACGCGTCCTTG
ATGACAGCCTGGCAGGGTTGTGCTCCCACCGTGTTCGTGGCCTTGCTCGG
TTCCTCGGCTCTCTTGCAGCTGCCTTACCTGCTTTGGGGCTCTGCCTACA
CCAGAAGCCTGACCATGGCGTGTCCAGCGCTGACGAGATGGGCGACATAT
CAAGCCCTGGCGGCGGTGGCGGCCAACAATTTTGCGACGTTTTTGGTAAC
CTTGGTGGTACACAGCCGACTGCCCTTACACCATGTGGCTTTCTACAATG
TGCTGGTCCCCCTGATCCCCACCTTGAACATTGCTGCCTTTTGTTGGCGG
TATCCGGGTATGAATATACCTTTGATTCTGCAACTTCTGCTTCGGCCTCC
GGGAGCTGGGTGCGTACAGGCGATGCCTGCCGCTTGGTTGTCTTGAGGGA
AGGGGCATAAATAAATGGTAAAAATAGGTTCACGAAATTGAGAAATAAGA
CGGATGCCAGGCAGGCTCTACTACACGCCTTCTTCGTGTGCGAGTATGGC
TGAATCCTCGAGCTCCCTTACAGTGGGCGCTATGTGAATATTGTGTCGCT
TTTCGATGTTCTGTGACGGATTTGGAACGATACTTGAAAATAACTGTATG
CCATGCATGATAAAGGTATTTCGCTT
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Coding sequence (CDS) from alignment at CM002460.1:783754..785629-

>rna3127 ID=rna3127|Name=rna3127|organism=Nannochloropsis gaditana|type=CDS|length=1485bp|location=Sequence derived from alignment at CM002460.1:783754..785629- (Nannochloropsis gaditana)
ATGCTATGGCTGCTCGTCATCTGCCTAAGCGTCCCTGGTGCGCGGACTTT
CCGATTGCCGGTGACCCGCTCCTCAGAGCCCTTGACAAAGGATACTCCCC
GCCATTTGCGCTCCGTATGCGAGAATAATTTCTCATCCTTTCCACATTTC
TGTCCTGGATTATATGTGTCATTTCCGCATACGTGTCGGTTCGGTGGAGT
GCGGTATCCACGGTGCCGGACTGCGCCATCTCCCCCCACATGCCTTCGAC
AGGCGCTTCAATTCCACGACCCTTTGAAGCCACCGTGGCTAGCACTTCTA
AAAGCTGATCATAAGTTAAAGCAGGCAACAGTGAAAGCAGCTGGCAACAT
GGCTCAAGATTACGAATTGTCGCCTTCACTGGAGCCTAAGATCGCACGAA
AAAAGTTTGTAGCAAGTTTGGTAGTCGGGATAGGGGCTTCCATGACACTG
CTTGCGTCCATCTGCTTTCGTACCATGCCTTTGGGGAAGCGGGCATTTCT
CTCCATCGCCCCTTTGGCAGCGACCTTGTTGCCATACTTCCTGTGTGTGG
CCCGAGGGTTACCTTTGGTGAACGTGGGAAGCTGGCGGTCACTTAATGCA
ATCGGACATCGACTGGGGGGCATCGGCGCTTTGCTCTTACCGCTTGTCCT
TGTCGTTCGGGAGGCATTGACTAACACACATGCGCCTGGACTATTGTACG
GTGTCACGGTGGCTACAATTCTAATGAATCTTCTGTTCGGCGTCGCCCTG
ATTCCCAGTCGCTTCCCCGCCTACGATATTCCTGCTGCTCGCGGACTGGC
TGTAGGCACTCTGTACGGACTAGCATTTTTGGGGTGGAGCACGACCTTTC
GTTTTGGCGGCCAGGCGTGGTACGCGCCAATAGGGAGGCTCTCTGCTTTA
GTAGCTGCATATGCCGTTGCATTTTCCTGGAGTGATGCTGGTCAGAACAT
TCGATGCTGGCGGCGGGGGATGTATAAGACAAAACTAGGCCGGAAATGGT
ACTTGCCTTTCGAACGCTCTTCGCTCACTCAAGTCTTTGGGAGCAATTTG
TGGCGACAGCCGTCGGCGGACGCTTTGGACGCGTCCTTGATGACAGCCTG
GCAGGGTTGTGCTCCCACCGTGTTCGTGGCCTTGCTCGGTTCCTCGGCTC
TCTTGCAGCTGCCTTACCTGCTTTGGGGCTCTGCCTACACCAGAAGCCTG
ACCATGGCGTGTCCAGCGCTGACGAGATGGGCGACATATCAAGCCCTGGC
GGCGGTGGCGGCCAACAATTTTGCGACGTTTTTGGTAACCTTGGTGGTAC
ACAGCCGACTGCCCTTACACCATGTGGCTTTCTACAATGTGCTGGTCCCC
CTGATCCCCACCTTGAACATTGCTGCCTTTTGTTGGCGGTATCCGGGTAT
GAATATACCTTTGATTCTGCAACTTCTGCTTCGGCCTCCGGGAGCTGGGT
GCGTACAGGCGATGCCTGCCGCTTGGTTGTCTTGA
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Synonyms
Publications