rna312, rna312 (mRNA) Nannochloropsis gaditana

Overview
Namerna312
Unique Namerna312
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1308
Alignment locationCM002455.1:770441..772276 -

Link to JBrowse

Properties
Property NameValue
Productphosphatidylinositide phosphatase sac1
Orig transcript idgnl|cribi|Naga_100026g3.10613.mrna
Orig protein idgnl|cribi|Naga_100026g3.10613
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:770441..772276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g3gene301Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30359.1cds312Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna312rna312-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna312 ID=rna312|Name=rna312|organism=Nannochloropsis gaditana|type=mRNA|length=1308bp
ATGAGAGCGTTACTACAGCAGAGATGTCGACGACTTGCAGTGGCTCAGGC
CAAATTACGAGGCGTACCGGCAGTTGCGCGTGTAAGGCAATCGACAACTT
TCTCAACATTGTCTGCAACGTCATCTCATACCATCGTGCCCTCGACGCGA
GTTTTTGCGTGGGGTCAGGGCACCGAAGGACAGCTGGGTCATTCTCCCAT
ACAAAAAAGTGCTCTTACGGGGGCTTACGTCGAGCTTTCACCGCGCGAGC
TACGGCTCGACACTGAACAAGACCAGCAAAAAATAGAAAAACACAACCCT
TGGGGTTTTGTGGACCTGGCTGCAGGGCTGAACTACTCGGCTGGGGTCAC
AGAGGACGGGAAATTATACACGTGGGGTGACGGGAGCAACCACAAGCTCG
GCCACGGCGACAGCAAGCCCGTATACCGCCCCAGGCAGGTGGAGGCCCTT
CAAGACGTGAAGATAGTCAAGGTGGCATGCGGCGATTTTCACACGGCAGC
CATCGACGAGGACGGGAGGCTTTGGACCTGGGGTTGGGGTGGGTCGCTTT
TCGGGGGCATCGGCGGTCTAGGCCACGGAGATGAGGCTGAGCAGCCGCGA
CCAAAAGTTGTGAGAAGTCTCGTGGATTATGGGTGCCGCGTGGGGAGCGT
GGCATGCGGAGAGAAGCACACGCTGATCCTTACCGACGACGGGGAGGTGT
TGACGGCGGGCAACGGGGAGTACGGCAGGTTGGGGAACGGCGGTAGCAGT
GACCATCGCGTTCCCGAGCCTGTGGAGTTGTTCGATGAGAAGACCAACAT
CGTGGAGGTGGCGGCAGGCCACGCCTTCAATCTGGTGCTGACACAGGACG
GCAAAATCTTTACCTGGGGAAGGAACGAACAGGGCCAGTTGGGCCTGGGC
GGCGGCATCAGCATGGATGTGTACTCGATGGAGGCGGTGCCACTCCTTGT
CGAGGCTCTGGAAAGCAAAAAGGTGGTGCACGTGGCCGCGGGGCACTCAC
ACTCGGCGGCAGTGACCGAGGAGGGAGAACTTTACATGTGGGGCATGAAG
ATCCACTTGGAGCCCCAGGTCTTTAGGGTTGGGGAGGGGGATAAGGTCTG
GCAAGTCGGGTGCGGCGGCAGCCACACGGCCGTGGTCACGGAGGACGCGC
ACCAGCTGTTCACTTTTGGGAAAGGGTCTTCCCTTTGTCTGGGCCACGGC
ACCAGAAGCTACACGCCACACCCCAAATTGGTTGCCGATGGGCTGGCCGG
GCGGGGGGTCGTGAAGGTAGCATGCGGGCACAGGCACATGGCCGTCATTA
CGGACTGA
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protein sequence of rna312

>rna312-protein ID=rna312-protein|Name=rna312|organism=Nannochloropsis gaditana|type=polypeptide|length=611bp
MTSKPFNLHLFDDRIAIERTDSGAALIISRSVPEAPLEAYVDERGKVSRE
TAGGQLIPVDALFGIYHLLSGPYMVLVTDSEVTVALGDGIEFRKVAKVAV
LPLIKNNVPLTEEKQADEDRYLELLHLAISSHNFYFSLNHDVTQTLQRLS
GVSPEDRVKKPLWQRADDRFFWNRDVVGELVAAKAHEWIVPMMNAYVDLR
QNCSAGSHRFHLLFISRRSRHRQGCRFTMRGADEEGRVANFVETEQALLH
EDGRQTALVQVRGSIPLQWHSPVSLKYTPRVFFGEAATGQAAARKHVEEL
VELYGPEGVVFVNLVNMKKDEQALGIRFKQAIDELQSKVLRYVWFDFHHE
CKKMRYGNLAKLLQEVETEFQKQSFFARAADGSVTHLQKGVIRTNCLDNL
DRTNVVQSIIARRSLLVQLKEKAALALDGAHVLETPFPSFEKVFKDVWGN
NADAMSVLYSGTGALKTDFTRTGKRTINGALQDGVNSVMRYYKNNFIDAT
RQDALDLMLGRFRPDPALPSPFLYPPATQGKLSSFMTKVFVILVAVFSIA
MVLKPEEEVLPQLFLGSLLITFLVLILMARHLVTKGGKIGKELVAKPRLV
PEPYIYSFYSA
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mRNA from alignment at CM002455.1:770441..772276-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna312 ID=rna312|Name=rna312|organism=Nannochloropsis gaditana|type=mRNA|length=1836bp|location=Sequence derived from alignment at CM002455.1:770441..772276- (Nannochloropsis gaditana)
ATGACAAGCAAACCCTTTAACCTTCATCTCTTTGACGATCGAATCGCAAT
AGAGCGCACTGACTCGGGCGCTGCTTTAATCATCTCAAGAAGTGTGCCTG
AGGCGCCTCTGGAAGCTTATGTAGACGAACGAGGCAAGGTTTCGAGAGAG
ACGGCGGGTGGTCAGCTTATCCCCGTGGATGCCCTTTTCGGAATCTACCA
CCTTCTCTCGGGCCCGTACATGGTGCTTGTTACGGACTCGGAAGTAACGG
TGGCATTGGGGGACGGGATAGAGTTTCGCAAGGTAGCAAAAGTCGCTGTC
CTCCCATTAATCAAGAACAATGTACCCCTCACGGAGGAGAAGCAGGCAGA
CGAGGATCGGTACTTGGAGCTTCTGCACCTCGCCATTTCCAGCCACAATT
TCTACTTTAGCCTGAACCACGATGTGACGCAAACCCTCCAGCGCCTCTCG
GGCGTGTCGCCCGAGGACAGGGTCAAGAAGCCGCTCTGGCAGCGGGCGGA
CGACCGCTTTTTCTGGAACAGAGACGTGGTTGGAGAGCTTGTGGCCGCAA
AAGCGCACGAATGGATTGTGCCTATGATGAATGCCTACGTGGACCTCCGA
CAGAACTGTAGCGCAGGCTCGCACCGGTTCCATCTGCTCTTCATTTCGAG
GCGCTCTCGGCACAGGCAGGGGTGTCGTTTCACCATGCGGGGGGCCGACG
AGGAGGGGCGCGTCGCGAATTTTGTGGAGACGGAGCAGGCACTCTTGCAC
GAGGACGGGCGTCAAACGGCGCTGGTACAGGTCCGAGGCTCCATCCCTCT
GCAGTGGCACTCGCCGGTCTCCCTCAAGTACACACCGCGGGTATTCTTCG
GGGAGGCGGCCACGGGGCAGGCGGCGGCGCGAAAGCACGTGGAGGAGCTG
GTAGAGCTATACGGGCCGGAAGGCGTTGTTTTCGTGAACCTCGTGAACAT
GAAGAAGGACGAGCAGGCTCTGGGCATCCGCTTCAAGCAAGCCATCGACG
AGCTTCAGAGCAAGGTCCTGCGGTACGTCTGGTTTGATTTTCACCACGAA
TGCAAGAAGATGCGTTACGGAAATCTGGCAAAACTTCTGCAGGAGGTGGA
AACCGAATTTCAGAAGCAGTCTTTTTTCGCGCGGGCGGCGGACGGCTCGG
TCACGCATCTCCAAAAGGGCGTGATTCGCACCAATTGCTTGGACAACCTG
GATCGAACCAATGTCGTGCAGAGCATCATCGCACGTCGATCACTCCTTGT
ACAGCTGAAAGAGAAGGCCGCACTTGCCTTGGACGGAGCTCATGTACTAG
AGACCCCGTTTCCGTCGTTTGAAAAGGTCTTCAAAGACGTGTGGGGGAAC
AACGCAGACGCTATGTCTGTCCTCTACTCAGGAACCGGCGCTCTCAAGAC
AGACTTTACCCGAACTGGCAAGCGTACTATCAATGGCGCTTTACAAGACG
GTGTAAATTCTGTGATGCGATATTACAAAAACAATTTTATCGATGCCACG
CGTCAAGACGCCTTGGACCTGATGCTCGGCCGCTTCAGGCCCGACCCAGC
CCTGCCTTCCCCTTTTCTCTACCCGCCTGCGACCCAAGGAAAGCTATCGT
CTTTTATGACCAAAGTGTTTGTCATTTTGGTGGCCGTTTTCTCAATCGCC
ATGGTCCTGAAACCTGAGGAGGAGGTGCTGCCCCAGTTATTCCTCGGCTC
CCTGCTCATCACGTTCCTAGTCCTCATCCTCATGGCGCGACACCTTGTAA
CCAAAGGTGGAAAGATTGGCAAGGAACTCGTCGCCAAACCCAGACTTGTC
CCAGAGCCCTACATCTACAGCTTTTATTCAGCCTGA
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Coding sequence (CDS) from alignment at CM002455.1:770441..772276-

>rna312 ID=rna312|Name=rna312|organism=Nannochloropsis gaditana|type=CDS|length=1836bp|location=Sequence derived from alignment at CM002455.1:770441..772276- (Nannochloropsis gaditana)
ATGACAAGCAAACCCTTTAACCTTCATCTCTTTGACGATCGAATCGCAAT
AGAGCGCACTGACTCGGGCGCTGCTTTAATCATCTCAAGAAGTGTGCCTG
AGGCGCCTCTGGAAGCTTATGTAGACGAACGAGGCAAGGTTTCGAGAGAG
ACGGCGGGTGGTCAGCTTATCCCCGTGGATGCCCTTTTCGGAATCTACCA
CCTTCTCTCGGGCCCGTACATGGTGCTTGTTACGGACTCGGAAGTAACGG
TGGCATTGGGGGACGGGATAGAGTTTCGCAAGGTAGCAAAAGTCGCTGTC
CTCCCATTAATCAAGAACAATGTACCCCTCACGGAGGAGAAGCAGGCAGA
CGAGGATCGGTACTTGGAGCTTCTGCACCTCGCCATTTCCAGCCACAATT
TCTACTTTAGCCTGAACCACGATGTGACGCAAACCCTCCAGCGCCTCTCG
GGCGTGTCGCCCGAGGACAGGGTCAAGAAGCCGCTCTGGCAGCGGGCGGA
CGACCGCTTTTTCTGGAACAGAGACGTGGTTGGAGAGCTTGTGGCCGCAA
AAGCGCACGAATGGATTGTGCCTATGATGAATGCCTACGTGGACCTCCGA
CAGAACTGTAGCGCAGGCTCGCACCGGTTCCATCTGCTCTTCATTTCGAG
GCGCTCTCGGCACAGGCAGGGGTGTCGTTTCACCATGCGGGGGGCCGACG
AGGAGGGGCGCGTCGCGAATTTTGTGGAGACGGAGCAGGCACTCTTGCAC
GAGGACGGGCGTCAAACGGCGCTGGTACAGGTCCGAGGCTCCATCCCTCT
GCAGTGGCACTCGCCGGTCTCCCTCAAGTACACACCGCGGGTATTCTTCG
GGGAGGCGGCCACGGGGCAGGCGGCGGCGCGAAAGCACGTGGAGGAGCTG
GTAGAGCTATACGGGCCGGAAGGCGTTGTTTTCGTGAACCTCGTGAACAT
GAAGAAGGACGAGCAGGCTCTGGGCATCCGCTTCAAGCAAGCCATCGACG
AGCTTCAGAGCAAGGTCCTGCGGTACGTCTGGTTTGATTTTCACCACGAA
TGCAAGAAGATGCGTTACGGAAATCTGGCAAAACTTCTGCAGGAGGTGGA
AACCGAATTTCAGAAGCAGTCTTTTTTCGCGCGGGCGGCGGACGGCTCGG
TCACGCATCTCCAAAAGGGCGTGATTCGCACCAATTGCTTGGACAACCTG
GATCGAACCAATGTCGTGCAGAGCATCATCGCACGTCGATCACTCCTTGT
ACAGCTGAAAGAGAAGGCCGCACTTGCCTTGGACGGAGCTCATGTACTAG
AGACCCCGTTTCCGTCGTTTGAAAAGGTCTTCAAAGACGTGTGGGGGAAC
AACGCAGACGCTATGTCTGTCCTCTACTCAGGAACCGGCGCTCTCAAGAC
AGACTTTACCCGAACTGGCAAGCGTACTATCAATGGCGCTTTACAAGACG
GTGTAAATTCTGTGATGCGATATTACAAAAACAATTTTATCGATGCCACG
CGTCAAGACGCCTTGGACCTGATGCTCGGCCGCTTCAGGCCCGACCCAGC
CCTGCCTTCCCCTTTTCTCTACCCGCCTGCGACCCAAGGAAAGCTATCGT
CTTTTATGACCAAAGTGTTTGTCATTTTGGTGGCCGTTTTCTCAATCGCC
ATGGTCCTGAAACCTGAGGAGGAGGTGCTGCCCCAGTTATTCCTCGGCTC
CCTGCTCATCACGTTCCTAGTCCTCATCCTCATGGCGCGACACCTTGTAA
CCAAAGGTGGAAAGATTGGCAAGGAACTCGTCGCCAAACCCAGACTTGTC
CCAGAGCCCTACATCTACAGCTTTTATTCAGCCTGA
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Synonyms
Publications