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Properties
| Property Name | Value |
|---|
| Product | bile acid:sodium symporter family protein |
| Orig transcript id | gnl|cribi|Naga_100015g45.6403.mrna |
| Orig protein id | gnl|cribi|Naga_100015g45.6403 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:756596..759221 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3116 ID=rna3116|Name=rna3116|organism=Nannochloropsis gaditana|type=mRNA|length=4917bp
ATGGGAGTTCCCAAGTTTTACCGCTGGCTATCGGAGCGGTACGTATCGGT
CAACCAAGTCATCTCGGACCTGTCACTGCTCCCAGAATTCGACAACTTAT
ATCTGGATATGAACGGCATCATCCACGCGTGCACGCATCCGAACGACCAA
GAGGTCTGCCAGGGGCTCAGCCAGGAGGAAATGATGAAGAACATTTGGAA
CTACGTGGACCGCATTGTGACACAGATCGTAAAGCCTCAAAAGCTTCTCT
ACGTGGCCGTGGATGGCGTGGCGCCGCGCGCAAAGATGAATCAACAAAGA
TCACGCCGCTTCCGTGCCGCCAAAGACGCGGCCGAAGCGCGTGAAGAAGC
GGGGAAGAGGGGCGTCTCCGTGGACGAGGCGACAGTCTTTGATTCGAACT
GCATAACGCCAGGCACCGAGTTCATGGCGGTGGTGGATGCACACCTCCAG
TACTTCATCCGGAAGAAGATGCGGGAAGACCCGCTCTGGCGGCGCCTGAC
CATAATTTACTCGGGGCACGCCATACCCGGGGAGGGGGAGCACAAGATCA
TGCAGTACATGCGGGATTTGAAGGCCTCGCCCTCCTATCAGGCCAATGTA
CGGCACTGCATGTATGGGCAGGACGCCGACCTGATCATGCTGGCGCTTGC
CACGCACGAGCCGCATTTTACCCTCCTGAGGGAGGTGATCGACTTCGGGC
GAGGCCGGGCTGGGCCGGGCGGCTCGTCTGCCAACACGGTGATCAAACAG
ACGAAGGAGGCGAGTTTCCAGTTGCTGCACCTGTCCATCTTGCGCGAGTA
CCTGGAATTTGAGTTCCTGAGGGACGTGCCGGAAGAGGAAAGGGAGGTGC
ACTTGGAACGCATCGTGGACGACTTCGTCTTTTTGACCTTCTTGGTCGGC
AACGATTTCCTCCCCCATCTGCCCTCCCTGGACATTAGTGAGCACGCTTT
TGACAAGCTCTTCGAGCTCTATGGCGAGCAGTATCGAACGTGGGAGGGGC
AGGGTTATCTGACTAATAGGGGAGAGATTGACATCGAACACCTCCAGGCT
TTCTTGGACGCGATAGGGGCCATGGAAGACGACATCCTCAAGGCGCGGGA
GGAGGACGTGGCGGACTTCAATGCCCGACGGCGTCGGACCCAGAAAAAGT
TTGGGGTCCGGGGTGCGGAGGTGCCGAGCGAGGAGGCCCTGGCCGAGATC
GAGGCGGAAGCACAATCGAAGTACGAGATGGCCATGGCTGTGGCGGTGAA
GAAGGGAGAGATCTCGAAAGAAAGGGCGAGGGTGTTGCTGGGTTTCGCAC
CCATCCCGGTCGACAAAGAGGGCTCAGGCCCTGACGGTGGGGGCACCAAA
AAAGGAAAAGCGGAGCAGGCGTTGAGTGTGCCGGAGCCCGTTAAGAAAAA
CTTCCGCGGCCGGTACTACTTCGAAAAATTGGGCGTGCTCGATCCCGAGT
GCTCTCCTGTCGTCCAAGACCTGTGCAAGAGGTACGCGGAGGGCCTTGCC
TGGTGTCTGGCCTACTATGTGAAAGGCTGCGTGTCCTGGAAATGGTTCTT
CCCCTACCACTACGGCCCGCTCATATCGGACGTGAAAAACCTGGCGGGGG
CTGTGGGCTCTCTGAAGTTCGAACTGGGCGAGCCTTTCCTTCCCTTTGAG
CAGCTCTTGTCTTGCCTCCCGGCGGCATCGGCCAAGTTCCTGCCCCGGCG
TTATCAGTTCTTGATGACGAATCCTACATCCCCGATCGTTGATTTTTACC
CAGAAGAATTCAAGGTGGACATGAACGGGAAGCACAATCCGTGGGAGGGG
GTGGTGCTGATCCCCTTCATCGATGAGACAAGGCTGCGGGAGGCGATCAA
GAAGTACTGTCCCGAGTCCAGCTTGACAAGCGACGAAAAGAAACGAAACA
GCTTTGGGAAGATCCTGACCTTCCGACACTCCCCCGCCCTGTCTTTGACG
GTCCCGTCCTGCAACCCCGCCCTCTTTCCCGACCTGACCCACTCCCAGAC
GACCGTCACCCCATCCTCCTACAGCCCCGCCTCCCTCACCTCGTTCGCGC
CCTGCCTGGTTCCGGGAACTGTCATTCCCTTGCCCGGCTTTCCCTCCTTG
AAAGTCTTGCCCATCCAAGAGGTGGAGATAAAGGCCCTGAAAGTCAACGT
GAACGGGTCAGACTCTCGGTACCGGACTATTTGCCTCTCCCTGCCCGTCA
CGAGCCTCCCGGCAATCGAGACGCTCGCGCCAGAGATTGTGGGGAGACCC
GTGTACGTAAATTGGCCGATGATGCACGAAGCTAGAATCACTGCCGTCAC
AAATGGAAAGACGGCTTGGGATGTCTTCATCGAAAAGGAACAGAAGGCAT
ACCTGAACGGGCGCGGTACAGTGGGTCAGGGGGGCGTGGATTTGGGCAAG
GTGGAAATGACGCTGAAAGTGCGGGCCTTGCAAGGTCTGGAGCGATGCCC
CGCCACCGGGTCGACCAAGAAAGTCTTCGGCACGCACGAGGCAGATGTGC
CGATCCAACTCGCCATGTGGTCCGTGCCAACTGCCGATCCACGCTTTATC
GAGCAAGGGCCAGTGCCGTTGTTGGACCGGCTGCCGTTGGGCGCGGAGGT
GGTGGTGCTGGAGGAGGGAAAATTGAAAGGAATGACGGGGAAGGTGGTTG
GTTACAACAAAGGGGGACAAGAGCAGGTTAAAGTGGAGCTGGCTTGCGGG
GAGCCGGATCGGCCCATTGGTCTTCTGGCGAGGAAGGCATTTGGGAACAA
GTTTTTTGACGCCGGTGAGGTGATTCGAGCCCTCAATATTGACGGCAGGG
TCTTAGGGAAAGTCACGGGGTCGTGTTTCGTGAATCCGGGCAAACATGAC
TTGGGCCTGAACCTGAAGGTGCGCAGCAAGTGGGTGTTGCCTGACTACGT
CCGGCGGAAGGCAGTGGCGGGAGCGGGCAGTGGCAAAGCATGGGCCGCGG
CCGTGGACGTGGTGCGAATCGTGGGAAGCGCGGAGACGGGCGAGGAGGGG
GACACGGAACCTGGAGGAGTACCCTGGGAGTACTCGGAGAAGGCCGTCCT
CCTCTTGCGCGCCTACATGGACGCGTTCCCCCGCTTGTTTGAGGAGCTGC
GACGTCGGCCGAACGAAGTAAATTACGAAGGCCAACGTCTTTTTGGCGCG
AACTGTGCGGCCGAGTTGGAGAAGATTCGAACCTGGCTAGCGACACAAGT
GACGGCGAACATGCCCCGGGTCCCCTTGACCACCCAAGTCCTGTCCCGGG
AGGCGATCCGAGCCATTGAGCGGAGCGCGGACGAATTGCAAGCCAAAGCG
AAGAAAGCCGGCGCGAAATACGTGAAAGTCGTTGCGGTAGAGCTGAGCCC
AGAAAAAGTGCACTGCGCTCTGTCTCACAAGCCCTCTGACGTGGCGCGGC
GCTTGGCAGGGAAACCCGAGTTGGGGGACCGGGTGGTGAATCTGACCGGT
TTAGGCGTGCCTTTTGGCTTGCGAGGCACGGTGGTGGCTTTGCACACGCA
AACCGCCTGTGTGGAAGTTTTGTTCGACCAAGAATTTATCGGCGGGACCT
CCTTGCAGGGCACCTGCTCGCCCTACCGTGGAAAGTTTCTTCCCTGGTCG
GCCCTCTTGAAGACCACGGCAGCAGGTGGGACCTTGGATGCAAAGCGGGA
GCAGGCGGTACACGAGGGAGGGGATCAAGCGATGGGGGGCACGGTACGAG
GGAAATCCGGGGGGGGAAGGCAACCTCAGCAGCAGAAGGAACGGACTGGC
AAGAAAGAAATTGAAAAGGGCGGAATCACGCCGATACCCGTCAAAATCTT
GACGCGGGAGCAGCAGCTTCCACAGCAGGAACCGCAGCAACGGCGAAAAT
CACAACAAGCGCCTTCAGTGGGCTCGGTCTCGGCCTCTTGTCCTCCCATG
TCGACGGGAAGCAACCAGATGGGGCGGGACCTGTTGGCCTCGCTCACGGG
GAAGGAGAAAGGCATGGACAGCATCTCCCGCCCCAACGCAGCGATGACTG
TCCGGAACGGCAAGAGGGTGGATCCTCGCAACGCCATGGAGGTGGCGGTC
CGCGTGCACACCAGCAAGCCCGTCGTGTCCCTTCCCCTTGTAGAAACCGG
ACGCGATAAGGAGGAAGGAGGCGGGGATGTGAGGAGGGCGGGAGCGAAGG
ACAGTTTTGGCCGCCACTCGAAGGCGAAAGGTCCGGATGGAACGATTGGC
TTCCAACGGCGGCGCTCGCGTGAGGCTGCAGGCACGATTGCCGAGCGCAT
TCAAGAAGAGGAAGCCAAGGCCAAGCAAGATGACATGGCGCGTGTCATGG
GCCTCTTATCCTTGCAAAAGGAGGGGGATAACCTGCAACAGGAAACCTTG
GTGACATCGAAGAGCTCTGAAGTGGGAGGGGCAACGAACAACCTCAAGAG
CATACTCAACTTGACCGGCGGTATGAAAGGAAGCTCTTCTTCAAACCCTC
CTACAGCATCTAACTCGGTTGCGGTGCATCACCAGCAGCCACCACCAGCC
TACCCTTACCCCGCTGGTCCTGGATTTCTTGGACCGAACGGGTTTTATCC
GACCCCCCCGCCTCCTGGCTACTACTTTCATCCACACATGCCCGGCACCT
CCATGAGCTCCATGATGCCTCATCATCTCGTTGCACATCCTCAGTCTCCC
GTCATTCCTAGGCGCCCGCGTGAGCGACGGAGTTCGAATGCGGAAGGCAC
GGGGGGCGGCGAAAGCCTACAAGCTGGAGGTTACGGGGAAACAAGCTCTG
ATGGCGGCGGCGCGACTAATGGTAGAGGCGTGATAAGTAAAGGTTCATTT
ATCATGCCGAGTCAGGTATTACGCACAGGCAATTCCTCAAAAAAAGGCAT
ATCGGGGGAGAACGTCGCAACTGCTGCTGCGGAAAAGACAGGGGTAACAA
GTGGCACAAATTCCTAG back to topprotein sequence of rna3116 >rna3116-protein ID=rna3116-protein|Name=rna3116|organism=Nannochloropsis gaditana|type=polypeptide|length=414bp
MKLLTSVVVLSAAAILSVVNGFMTPAPQASFVAKLDPAMSRIHRSRASPS
MALSTAMGANGAWRFLSAARKAAVSLPTKSSTALASSAADMAPKKKMTAF
EMYEKGSELIVNLFPIWTVLSSGLALYRPELFAWFTTKYFTWGLGLLMLS
MGITLSPQDFADVLKRPSAVLVGFIFCYLFMPAFAYATAQGFALSPEMVA
GLVLVGSINGGQASNLCTYIAKGDVALSVMMTTATTLGAIFMTPLLCKFL
LGAIVPVDAVGIALSTVQVVLAPIVLGMLANKFLNRAVKAVLPFSPVVGM
VSTCLLVASAVAQCAPAILGAGWSLQIATIFYHLVAGVAGYAIPRFLKFS
ETDSRTMAIETAMKSSAFGFLLASLHFPNFLVRVPPAVSVVWMAVTGSTL
AVIWRFIPVKDEKK back to topmRNA from alignment at CM002460.1:756596..759221+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3116 ID=rna3116|Name=rna3116|organism=Nannochloropsis gaditana|type=mRNA|length=2626bp|location=Sequence derived from alignment at CM002460.1:756596..759221+ (Nannochloropsis gaditana)
AGGCATAGCGATCATCACCCGAGGTCTCGTCATGGCGTCTCACGCGATCT
CTGAAGTTTCGTGCGAGTAGATGTCGAGTCCTGAGTTTTTTAGCAAACTC
TGGTGTGAAAAGCAATGATGGCACCGCGCATGGTGGGAGCTTTCTTTTGA
AAGCTGTCCGACAGTATGGTAGGGATACTGCAAGGACGTATCTTGAGCGC
ACTGGTCGACGCGGCAGGAGGATTGCCCGTGCACGCCTCAGGTCAGCGAG
CCTTCGCCCTGTCCGGCCTTCCCACTGGGTTTACACCCACAAGTCATGCT
ATCATTCAGTGCTTTGGCAAATCGGTGAGCTGTTAAAGTAAGAAGTGCTT
CAATTTTCCATCAGCCACGAAGTCTGGCTCACGAAAAAGCGCGAGGAGGC
CATGGGTTACCTGACTTACGACACGCCCTAGCCAGAGCAATATATGGTCA
TAAGTCCCTATGATTGTATGGACGTTGCCTGCTCTCAAGTGTTGGCTTTT
CATGCCAAGAGCTCTGCTTCATCACCTGTCACGAACACTGACAAAACAGC
TTATCtgaaaggaaagcgaaagAAACTCCTCTTAAAAGCCCAGTCTAAAT
AGTGTCTTTAACTATGCCCTTACATGCGAAGTCATGTAGAACGCACAATC
TTTCTGCTGTGTTGGTGGCAGGCTATTGCCTGTCGTACGAAGTGTCTGCg
tgtctttttcttggcCGCATGCCTCTTCCTGTCCCGTCACGACTTTCGCT
GTAgttgtctccttctccttttaaGCCTCATGACACCCCCATGTCCTATC
GATATTGTGCAAACAGACACGTGCGTCCTTCCTCGCGGTAGCTAGAAGTG
AAACAAGAAGCCAGCCATGAAATTGCTTACCAGTGTCGTCGTTCTCTCAG
CGGCCGCGATCCTAAGCGTCGTGAATGGCTTCATGACGCCGGCCCCCCAA
GCCTCCTTTGTCGCCAAGTTGGACCCTGCCATGTCCAGGATTCATCGAAG
CCGCGCATCTCCTAGCATGGCTTTGAGCACAGCGATGGGTGCCAATGGAG
CGTGGCGCTTCTTGTCCGCTgcccgcaaggccgccgtctccctgccTACC
AAGTCCTCAACAGCACTGGCATCCAGCGCAGCAGACATGGCCcccaagaa
aaaaatgaccgCCTTTGAAATGTACGAGAAGGGCAGTGAGCTGATCGTCA
ACCTTTTTCCCATTTGGACCGTGCTCTCCTCGGGCCTTGCCCTCTACCGC
CCTGAGCTCTTCGCCTGGTTCACCACCAAGTACTTTACCTGGGGACTGGG
GCTTCTCATGCTCTCCATGGGCATCACCCTCTCACCGCAGGACTTCGCGG
ACGTCCTCAAGCGACCCTCGGCCGTACTGGTGGGTTTCATCTTCTGCTAC
TTGTTCATGCCCGCCTTCGCCTACGCCACGGCGCAAGGCTTCGCCCTGAG
CCCCGAGATGGTCGCCGGCCTGGTTCTGGTCGGGAGCATCAACGGGGGGC
AGGCCTCGAACCTGTGCACCTACATTGCCAAGGGCGACGTGGCTCTGTCC
GTGATGATGACCACAGCCACCACCCTGGGCGCCATCTTCATGacacccct
cctctgcaaGTTCCTCCTCGGGGCCATCGTCCCCGTCGATGCCGTGGGCA
TTGCCCTCTCCACCGTTCAAGTCGTCCTGGCTCCCATTGTCCTGGGTATG
CTGGCCAACAAGTTCTTGAACCGGGCCGTCAAAGCAGTgctgcccttctc
ccccgtggTGGGCATGGTCTCAACCTGCCTCTTGGTTGCCTCCGCGGTCG
CGCAGTGCGCCCCGGCCATTCTGGGCGCGGGGTGGAGCCTGCAAATCGCC
ACCATCTTCTACCATCTGGTCGCTGGGGTCGCTGGATATGCCATCCCGCG
CTTCCTGAAATTTTCTGAGACGGACTCCCGGACTATGGCGATTGAGACCG
CGATGAAATCGTCCGCTTTCGGATTCCTGTTGGCTAGCCTCCACTTTCCT
AATTTCTTGGTCCGGGttccccccgccgtctccgTGGTGTGGATGGCTGT
AACAGGCTCGACTCTGGCGGTCATCTGGCGTTTCATCCCGGTCAAAGACG
AGAAGAAATGAGCGGCGACTGCAAAATCGTCTTCCTTGTGCTGAATCAGA
GGAAGACTATAGCAGACGATGATCGAAAAGCTTTTCTCGAAAAGATCGCA
TGCATGTTTGCCTCTGATTGTTGACCGGCACGACGTGATCCGTACCCCTG
TTCCCTGTTTGTGTCTCTGTGAGCGCGTGTAGTTGTGGTTAAGTGAGTCA
CAGGGTTCTGAAGTGTCATTATTTGTCTGACAAATGTCATGTATGTCCTG
GGATAACCTGAACGTAACAAGTGGACATTTATGTTTGTTAATGATTCTTT
AAAGATACTCTTCTACTCTTTCATATCTCTACCTTTCaatcatttttttt
aaatttttGGGGGTTTTACGACACCAAAGTAAGGAAGTGAGAAATCGAGA
AAAGGTCGATTGGGGGCGGCTTTCCCTTTACCTGTTGAATACCGCATCAA
CGAAGAGGTTCCCTTCCCAACTTAATAGTCATGCGGCGGATATCGTATGT
TTACCCAAAATTAGGGAAGCTTGTCC back to topCoding sequence (CDS) from alignment at CM002460.1:756596..759221+ >rna3116 ID=rna3116|Name=rna3116|organism=Nannochloropsis gaditana|type=CDS|length=1245bp|location=Sequence derived from alignment at CM002460.1:756596..759221+ (Nannochloropsis gaditana)
ATGAAATTGCTTACCAGTGTCGTCGTTCTCTCAGCGGCCGCGATCCTAAG
CGTCGTGAATGGCTTCATGACGCCGGCCCCCCAAGCCTCCTTTGTCGCCA
AGTTGGACCCTGCCATGTCCAGGATTCATCGAAGCCGCGCATCTCCTAGC
ATGGCTTTGAGCACAGCGATGGGTGCCAATGGAGCGTGGCGCTTCTTGTC
CGCTgcccgcaaggccgccgtctccctgccTACCAAGTCCTCAACAGCAC
TGGCATCCAGCGCAGCAGACATGGCCcccaagaaaaaaatgaccgCCTTT
GAAATGTACGAGAAGGGCAGTGAGCTGATCGTCAACCTTTTTCCCATTTG
GACCGTGCTCTCCTCGGGCCTTGCCCTCTACCGCCCTGAGCTCTTCGCCT
GGTTCACCACCAAGTACTTTACCTGGGGACTGGGGCTTCTCATGCTCTCC
ATGGGCATCACCCTCTCACCGCAGGACTTCGCGGACGTCCTCAAGCGACC
CTCGGCCGTACTGGTGGGTTTCATCTTCTGCTACTTGTTCATGCCCGCCT
TCGCCTACGCCACGGCGCAAGGCTTCGCCCTGAGCCCCGAGATGGTCGCC
GGCCTGGTTCTGGTCGGGAGCATCAACGGGGGGCAGGCCTCGAACCTGTG
CACCTACATTGCCAAGGGCGACGTGGCTCTGTCCGTGATGATGACCACAG
CCACCACCCTGGGCGCCATCTTCATGacacccctcctctgcaaGTTCCTC
CTCGGGGCCATCGTCCCCGTCGATGCCGTGGGCATTGCCCTCTCCACCGT
TCAAGTCGTCCTGGCTCCCATTGTCCTGGGTATGCTGGCCAACAAGTTCT
TGAACCGGGCCGTCAAAGCAGTgctgcccttctcccccgtggTGGGCATG
GTCTCAACCTGCCTCTTGGTTGCCTCCGCGGTCGCGCAGTGCGCCCCGGC
CATTCTGGGCGCGGGGTGGAGCCTGCAAATCGCCACCATCTTCTACCATC
TGGTCGCTGGGGTCGCTGGATATGCCATCCCGCGCTTCCTGAAATTTTCT
GAGACGGACTCCCGGACTATGGCGATTGAGACCGCGATGAAATCGTCCGC
TTTCGGATTCCTGTTGGCTAGCCTCCACTTTCCTAATTTCTTGGTCCGGG
ttccccccgccgtctccgTGGTGTGGATGGCTGTAACAGGCTCGACTCTG
GCGGTCATCTGGCGTTTCATCCCGGTCAAAGACGAGAAGAAATGA back to top
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