rna3111, rna3111 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3111
Unique Name	rna3111
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2218
Alignment location	CM002460.1:736603..740031 +

Link to JBrowse

Properties


Property Name	Value
Product	dual specificity protein phosphatase 3
Orig transcript id	gnl\|cribi\|Naga_100015g51.6402.mrna
Orig protein id	gnl\|cribi\|Naga_100015g51.6402
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:736603..740031 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g51	gene2989	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3111	rna3111-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27586.1	cds3103	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:736603..740031+
coding sequence from alignment at CM002460.1:736603..740031+

mRNA sequence

>rna3111 ID=rna3111|Name=rna3111|organism=Nannochloropsis gaditana|type=mRNA|length=2218bp
ATGTCACAATTGTATACGACAGACGTGGCAGACGATGCGTCTTATGTCAA
GGCTTTTCATGCTATTGTTTTCGCAGCAGCTTCTTAGCAGTAGCCGACTT
GTCGCATTGACTGCCACACGAAGCATCAGGAGAGGAGGTCGACATCTCTT
TAAAGGGCAGCAACACAGCCACCCACAGCTCGGATTTCTGCACATTGGGG
CAGGCTTTCGGCCTATCCTTCCGCCAAGTATGTCCTCATCGTCGTTTTAT
CCCTCTTGTAAAGGAATTTTTTCTTTCTCCTCTTCCGGTTCCTCTCCACC
GCACAAGCGCTCTCGTACCGTCCAACTGTCCGCTACGACGACGCCCTCCG
AACACTTACCATCCCTTCTCGAAGCAAGCAACTACCGACGTGCGCTCACA
TATCAAGTCCGTGATTCTTTACGTGAGGCTTTTGGGCCTGACGCGGACGG
TGCCGACCCAATGGTGACACCGGCAACGCGTCCTGAGTTCGGGGATTATC
AGTGCAACGCCGCCTTAGCCCTTGCCAAACGGCTGAAAGCGAAGCCACGA
GACGTGGCGGAGAAACTGAAAGACGCACTAGAAAGTCGGACGCAAAAATG
GTGCGAGCCGTTGGAAATCGCAGGACCAGGTTTTATTAACGTGCGGATGA
CGCCTGCGTTCGTGGAGAGCCGCCTGAACGCGATGCTGTCCGACCAGACA
GGTCGCCTGGGCGTTCCCAGACCCGCGCGAGCACAACGTGTGGTGGTGGA
CTTTTCCAGTCCCAACATCGCTAAGGAGATGCACGTGGGACATTTGCGAA
GCACGGTGATTGGGGACACGCTGGCACGGGTCTTGGAATTCTTGGGCCAT
GGGGTGCTTCGGCTCAATCACGTGGGCGACTGGGGCACCCAGTTCGGGAT
GCTGATCACGCATTTGAAAGACCGGCACCCAGATGTATTGGCCGAGGGCG
AGGCGGCGGCGCAGACGGATCTGGGCGACCTGGTTGAGTTCTACAAGACA
GCCAAGCAGCGCTTCGACGTGGAAGAGACGTTCAAAGCGCGCAGCAGGCA
GGAAGTAGTGAACCTTCAGCGTGGAGAGCCGGCCACACTGCAGGCCTGGC
GCACGCTTTGTCAACTCTCCCGGGTCGAGTTTCAAAAGATCTACGACGCC
CTGGGAGTGCGTCTGGAGGAGCGGGGGGAGTCGTTCTACAACCCATTGCT
GGCCCAAGTGCTTTCAGATTTGGACGCCTCGGGCCTGCTCAAAGAGAGCG
AGGGCGCTCGGGTCGTTTATCTAGAAGGGTACCAGACCCGTGAGGGGGAG
GCGCAGCCCTTCATCGTCCAGAAGTCGGACGGGGGTTTTTTGTACGCAAC
GACCGACCTAGCGGCGGCGCGTCACCGGGCTCTGGAGGAGAAGGCAGAAC
GTATATTGTACGTGACCGACGCGGGGCAGGCCTCGCATTTCGACCAGGTC
TTTCAAGTCGCCCGCCAGGCTTCTTTGGTGCCTCCAGAGGTGCAGTTGAA
GCACGTGCCTTTTGGGCTGGTCCAAGGGGAGGATGGGAAGAAATTCAAGA
CACGGGCCGGGGAGACGGTTAGGCTGAAGGATTTACTGGACGAAGCCGTG
CGTATTGCACGTGATGATTTGTTAAAGCGGGCGGAAGAGGGCACCCAGCC
TCTGCCAGAAGATTTGGAGAGAAGCGCGAGGATAATCGGCCTGGGCGCGG
TCAAATATGCTGACCTTTCTCTAAATAGGGAATCAGATTACAAGTTTTCC
TACAAAAAGATGCTCTCGCTCAGTGGAAATACGGCACCCTACATGTTGTA
CGCCTACGCCCGAATTCAAAGTATACTTCGTAAAGGCAACAACGGTGAAA
ATGAGGATAGGCTTTCTCAGGGGAGCACGCCGCCAGTCGTGCTTGCAGAG
CCGGCGGAGATGAATTTGGCCCGACAACTCATCAAGCTTACCGAGCTCTT
GCAGCGGGTTGAGGCTGAATTATACCCGCACATACTCTGTGAGTACATGT
ACGATTTATGTCAGAAATTCAACCAGTTTTACGAGGCCTGCCAGGTGAAC
AACGCACCGACCCCTGATCTGGTTCGTTCACGGCGCGCCCTCTGCGTTCT
CACAGCTCAAGTGCTACGTCTATGTCTAGATTTGCTCGGAATCGAGGTAC
TAGAACGAATGTAATGCCATCTTAAAATTCACGAAGGAAATGGAGAATAA
AACTGAAACAGACCGTCA

protein sequence of rna3111

>rna3111-protein ID=rna3111-protein|Name=rna3111|organism=Nannochloropsis gaditana|type=polypeptide|length=1067bp
MNVDNPLGLPGGTTPRGPGYIDLASLSELERRMATELSTALATTTYEIRD
KLSEVMPGLFLSNGLIAQDLPALRAKRISHILNLAPLEVPTTANFYAADH
IEFKAISAKDEFDYDMMQHWSESREYLDRALKQDRGRVLVHCQAGINRSG
AIAVAYMMVTRRRMLIEAAKSVKRKRYQLITNSNFQLSLVKFATSENLLG
KPAPPRRRLSPTPYPAASVPTDEFAATRWPFGGKGKPAVLFLHGTFAPVH
KGHLAALDSSLAFIRSQLPELQLAGAFFSPCHQVDALSRMTPDEVVSLED
RLGMLRLACPQATALAEIPVGVDTWECTQIAPPPLSTSVRSFARRATAAA
IRRGVDSLPVVVWVVGASGLHWDTAKDGMDVDPSLVAVCVMVDEGQEEER
QALHRELKDGPLRDKVLWVHARGPSYSSQRVREGSLPVGIPPVEKYAKEH
LLWNTPSAEEMRLAALIHQGLLREGLVGWGEEKAMAAIQEDDATVARVEE
VGNIWACPLEQPRVWRCFYKPPPRPLCTPAETPRSLFNLSSSSLADMDSE
SESGPSQAPCLHKPTRSQPQGVPPLPPSQGTVEPPPRLPSPVPILSPGPL
TPSLSDFPSAASLAARLTAQDSRPVRRLVVKVFSAEEWEELRVEEEAYRR
LEFVRLQHVAALALPSLVGVARHPHRREGALVFEDAVAQGWEMVGDPEGS
ALYGPVKEDSPLFPPSALPGKPVLPASPATLSSTSLGPISGSCLVSASAV
EKVLKAVVALAWLHAKHWGILERAAWDGVVDACVRPGGLKVLRGSSYSTL
STGSSQDGGKEGGGEARGESLEELDGLPFLWAGEHVRRRRRRLCEAWERL
RNRAGLSLSQDATARLERLVEEPGLLEALYRPVLTKDEAVPQGLPGWVET
NEDDAVAVRRVGTLTVLHGAFTWDKLGFSMHANEGVLAVGWEQACVGPGP
WDLALLLATARRDGEESEFKGSGKREDQNDDDAEMTALSLYHQILMEGGV
EQYDFERLLFEYQRAKAGLAPELLSTIARHLDEEDDVKGKKLGDTAQDAY
CMSLRNALEASLDLLDG

mRNA from alignment at CM002460.1:736603..740031+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3111 ID=rna3111|Name=rna3111|organism=Nannochloropsis gaditana|type=mRNA|length=3429bp|location=Sequence derived from alignment at CM002460.1:736603..740031+ (Nannochloropsis gaditana)
CCAAAGTATTGCGATCTCATCCGCTCAATTCCTACACATAAATACAACCC
CACTGGCGTATAGTTGAACCACAGAAAATGAACTTTGTGGTGGCCTGTTG
TTTTTCTATGTAGCAGAGACTTCAGATTTGTCCAACCAACATGAATGTCG
ACAATCCACTGGGACTTCCCGGCGGCACCACGCCTCGAGGTCCCGGCTAC
ATCGATCTGGCAAGCCTGAGTGAGTTGGAGCGGCGAATGGCTACAGAATT
GTCCACGGCGCTGGCTACGACTACTTACGAGATACGGGACAAACTATCCG
AAGTCATGCCgggcctctttctttccaatGGATTAATCGCTCAagacctg
cccgccctccgtgcAAAACGCATCTCTCACATCCTGAATTTGGCTCCGCT
GGAGGTGCCCACAACAGCCAACTTTTACGCAGCAGATCATATCGAGTTCA
AAGCTATATCAGCAAAGGATGAATTCGATTACGACATGATGCAGCACTGG
TCCGAGTCGCGCGAGTACCTCGATCGTGCCTTGAAGCAAGACAGAGGCCG
TGTGCTCGTCCATTGTCAAGCCGGCATCAACCGGTCCGGGGCTATCGCTG
TGGCGTACATGATGGTCACCAGACGACGCATGTTGATTGAGGCGGCCAAG
TCTGTAAAGCGGAAACGGTATCAACTAATCACCAATTCTAATTTTCAATT
GTCGTTGGTAAAATTTGCTACCTCGGAGAATTTGCTCGGCAAGccagctc
cgcctcgtcGAAGACTGTCTCCCACCCCTTACCCCGCCGCTTCAGTGCCG
ACGGACGAGTTTGCGGCGACACGATGGCCTtttggtgggaagggaaaacC
GGCCGTGCTGTTCTTGCACGGGACTTTCGCCCCCGTGCACAAGGGCCACC
TGGCGGCGCTGGACTCCTCTTTGGCGTTTATCCGCTCGCAACTCCCAGAA
CTCCAGCTTGCCGGCGCCTTCTTTAGCCCCTGTCACCAGGTggacgccct
ctcccgcatGACCCCGGACGAGGTCGTGTCGTTGGAGGACCGTCTGGGCA
TGCTCAGACTCGCCTGTCCGCAGGCAACGGCCTTGGCAGAGATCCCCGTC
GGCGTCGACACCTGGGAGTGCACACAGatcgctccccctcccttgtcgaC
CTCCGTCCGCTCCTTTGCGCGCCGGGCCACCGCGGCCGCCATCCGGCGGG
GGGTGGACAGCCTGCCCGTGGTGGTGTGGGTGGTGGGGGCATCGGGGCTG
CACTGGGACACGGCCAAGGACGGCATGGAcgtcgacccctccctgGTCGC
TGTCTGCGTgatggtggacgagggccaggaggaggagaggcaggcgtTGC
ACAGGGAGTTAAAGGACGGGCCCCTCCGCGACAAGGTCTTGTGGGTGCAC
GCCCGCGGACCCAGCTATTCCTCCCAGCGGGTACGGGAGGGAAGCCTGCC
CGTGGGGATTCCGCCGGTGGAGAAATACGCAAAGGAGCACTTGTTGTGGA
ACACGCCGTCCGCGGAAGAGATGCGCTTGGCGGCGCTCATCCACCAAGGC
CTGCTCAGGGAGGGCCTGGTcggatggggggaggagaaagccatGGCCGC
GAtccaggaggacgacgcgACAGTGgcgcgggtggaggaggtggggaaca
TCTGGGCCTGCCCGCTTGAGCAGCCTCGGGTCTGGCGGTGCTTTTACAag
ccgccccctcgcccgctcTGCACCCCGGCTGAGACCCCTCGAAGCCTCTT
CAatctgtcctcctcctccctggcgGACATGGACTCGGAGAGCGAGAGCG
GCCCTTCGCAAGCCCCGTGTTTGCACAAACCGACACGGAGCCAGCCGCAG
GGAGTGCCGCCTTTGCCGCCCTCGCAGGGGACCGTCGAACCCCCgcctcg
tctcccctcccctgtccccatcctctcccccgggCCCCTGACGCCCAGCT
TGTCcgactttccctccgccgcgTCCCTGGCCGCCCGCCTGACTGCGCAG
GACTCGAGACCCGTCCGGAGACTCGTGGTCAAGGTCTTCTCCGCCGAGGA
GTGGGAAGAACTCcgggtcgaggaggaggcctacCGGCGCCTGGAGTttg
tccgcctccagcatgtagccgccctggccctgccCTCTCTGGTGGGGGTG
GCCCGCCACCCGCACCGGCGGGAAGGGGCTCTCGTCTTCGAAGATGCGGT
GGCTCAGGGCTGGGAGATGGTCGGTGATCCCGAGGGATCGGCGCTTTACG
GCCCCGTGAAAGAAGACAGCCCGCTttttcccccgtccgccctgcCCGGA
AAGCCCGTgcttcctgcctcgcctGCCACCCTTTCCAGCACGTCCCTGGG
CCCTATCTCCGGGTCGTGCCTTGTTAGCGCGAGCGCGGTCGAGAAGGTCC
tgaaggccgtggtggcgctgGCCTGGCTGCACGCCAAGCACTGGGGCATC
TTGGAGAGGGCGGCATGGGACGGGGTGGTCGACGCCTGCGTGCGCCCCGG
GGGCTTGAAGGTGCTTCGAGGCAGCAGCTACAGCACCCTTAGCACTGGGA
GCAGccaagacggagggaaggagggggggggggaagcgcggggcgagagc
ctggaggagttggacgggctccccttcctgtggGCGGGCGAGCACGTCCG
GAGGCGACGCCGGCGCCTGTGCGAGGCCTGGGAGCGTCTGAGGAACCGGG
CGGGCTTGTCCCTGTCTCAGGATGCCACGGCAAGGCTAGAGCGTCTGGTA
GAGGAACCGGGTCTGTTGGAGGCGCTGTACCGGCCCGTGTTGACCAAGGA
CGAGGCGGTGCCCCAGGGCCTGCCAGGGTGGGTGGAGACGAACGAGGACG
ACGCAGTGGCGGTGCGTCGGGTCGGGACCTTGACCGTGCTTCACGGGGCG
TTTACCTGGGACAAGCTGGGCTTCAGTATGCACGCGAACGAGGGCGTGCT
GGCCGTGGGGTGGGAACAGGCCTGCGTCGGTCCGGGGCCGTGGGACCTCG
CTTTGCTCTTAGCCACGGCGCGTCGTGATGGTGAAGAGAGCGAATTCAAG
GGGTCAGGCAAGAGGGAAGACCAAAATGACGATGACGCCGAGATGACAGC
CCTGTCCCTTTACCATCAAATATTAATGGAGGGCGGTGTGGAGCAGTACG
ACTTCGAACGGCTGCTTTTTGAGTACCAACGGGCAAAGGCGGGCCTGGCC
CCAGAGCTTTTGAGTACTATTGCGCGGCACCttgacgaagaggatgatgT
CAAGGGCAAAAAATTAGGAGATACAGCGCAGGATGCTTATTGCATGTCCT
TAAGAAATGCTCTGGAGGCCTCGCTGGATCTCTTGGACGGGTAACGACAG
GTGGTGAACAGAACGAGATAATGTAAAGTTTATGGAAGGTGCTACAAACC
AAAGCAAATCCTGTGtatgaggagaaagg

Coding sequence (CDS) from alignment at CM002460.1:736603..740031+

>rna3111 ID=rna3111|Name=rna3111|organism=Nannochloropsis gaditana|type=CDS|length=3204bp|location=Sequence derived from alignment at CM002460.1:736603..740031+ (Nannochloropsis gaditana)
ATGAATGTCGACAATCCACTGGGACTTCCCGGCGGCACCACGCCTCGAGG
TCCCGGCTACATCGATCTGGCAAGCCTGAGTGAGTTGGAGCGGCGAATGG
CTACAGAATTGTCCACGGCGCTGGCTACGACTACTTACGAGATACGGGAC
AAACTATCCGAAGTCATGCCgggcctctttctttccaatGGATTAATCGC
TCAagacctgcccgccctccgtgcAAAACGCATCTCTCACATCCTGAATT
TGGCTCCGCTGGAGGTGCCCACAACAGCCAACTTTTACGCAGCAGATCAT
ATCGAGTTCAAAGCTATATCAGCAAAGGATGAATTCGATTACGACATGAT
GCAGCACTGGTCCGAGTCGCGCGAGTACCTCGATCGTGCCTTGAAGCAAG
ACAGAGGCCGTGTGCTCGTCCATTGTCAAGCCGGCATCAACCGGTCCGGG
GCTATCGCTGTGGCGTACATGATGGTCACCAGACGACGCATGTTGATTGA
GGCGGCCAAGTCTGTAAAGCGGAAACGGTATCAACTAATCACCAATTCTA
ATTTTCAATTGTCGTTGGTAAAATTTGCTACCTCGGAGAATTTGCTCGGC
AAGccagctccgcctcgtcGAAGACTGTCTCCCACCCCTTACCCCGCCGC
TTCAGTGCCGACGGACGAGTTTGCGGCGACACGATGGCCTtttggtggga
agggaaaacCGGCCGTGCTGTTCTTGCACGGGACTTTCGCCCCCGTGCAC
AAGGGCCACCTGGCGGCGCTGGACTCCTCTTTGGCGTTTATCCGCTCGCA
ACTCCCAGAACTCCAGCTTGCCGGCGCCTTCTTTAGCCCCTGTCACCAGG
TggacgccctctcccgcatGACCCCGGACGAGGTCGTGTCGTTGGAGGAC
CGTCTGGGCATGCTCAGACTCGCCTGTCCGCAGGCAACGGCCTTGGCAGA
GATCCCCGTCGGCGTCGACACCTGGGAGTGCACACAGatcgctccccctc
ccttgtcgaCCTCCGTCCGCTCCTTTGCGCGCCGGGCCACCGCGGCCGCC
ATCCGGCGGGGGGTGGACAGCCTGCCCGTGGTGGTGTGGGTGGTGGGGGC
ATCGGGGCTGCACTGGGACACGGCCAAGGACGGCATGGAcgtcgacccct
ccctgGTCGCTGTCTGCGTgatggtggacgagggccaggaggaggagagg
caggcgtTGCACAGGGAGTTAAAGGACGGGCCCCTCCGCGACAAGGTCTT
GTGGGTGCACGCCCGCGGACCCAGCTATTCCTCCCAGCGGGTACGGGAGG
GAAGCCTGCCCGTGGGGATTCCGCCGGTGGAGAAATACGCAAAGGAGCAC
TTGTTGTGGAACACGCCGTCCGCGGAAGAGATGCGCTTGGCGGCGCTCAT
CCACCAAGGCCTGCTCAGGGAGGGCCTGGTcggatggggggaggagaaag
ccatGGCCGCGAtccaggaggacgacgcgACAGTGgcgcgggtggaggag
gtggggaacaTCTGGGCCTGCCCGCTTGAGCAGCCTCGGGTCTGGCGGTG
CTTTTACAagccgccccctcgcccgctcTGCACCCCGGCTGAGACCCCTC
GAAGCCTCTTCAatctgtcctcctcctccctggcgGACATGGACTCGGAG
AGCGAGAGCGGCCCTTCGCAAGCCCCGTGTTTGCACAAACCGACACGGAG
CCAGCCGCAGGGAGTGCCGCCTTTGCCGCCCTCGCAGGGGACCGTCGAAC
CCCCgcctcgtctcccctcccctgtccccatcctctcccccgggCCCCTG
ACGCCCAGCTTGTCcgactttccctccgccgcgTCCCTGGCCGCCCGCCT
GACTGCGCAGGACTCGAGACCCGTCCGGAGACTCGTGGTCAAGGTCTTCT
CCGCCGAGGAGTGGGAAGAACTCcgggtcgaggaggaggcctacCGGCGC
CTGGAGTttgtccgcctccagcatgtagccgccctggccctgccCTCTCT
GGTGGGGGTGGCCCGCCACCCGCACCGGCGGGAAGGGGCTCTCGTCTTCG
AAGATGCGGTGGCTCAGGGCTGGGAGATGGTCGGTGATCCCGAGGGATCG
GCGCTTTACGGCCCCGTGAAAGAAGACAGCCCGCTttttcccccgtccgc
cctgcCCGGAAAGCCCGTgcttcctgcctcgcctGCCACCCTTTCCAGCA
CGTCCCTGGGCCCTATCTCCGGGTCGTGCCTTGTTAGCGCGAGCGCGGTC
GAGAAGGTCCtgaaggccgtggtggcgctgGCCTGGCTGCACGCCAAGCA
CTGGGGCATCTTGGAGAGGGCGGCATGGGACGGGGTGGTCGACGCCTGCG
TGCGCCCCGGGGGCTTGAAGGTGCTTCGAGGCAGCAGCTACAGCACCCTT
AGCACTGGGAGCAGccaagacggagggaaggagggggggggggaagcgcg
gggcgagagcctggaggagttggacgggctccccttcctgtggGCGGGCG
AGCACGTCCGGAGGCGACGCCGGCGCCTGTGCGAGGCCTGGGAGCGTCTG
AGGAACCGGGCGGGCTTGTCCCTGTCTCAGGATGCCACGGCAAGGCTAGA
GCGTCTGGTAGAGGAACCGGGTCTGTTGGAGGCGCTGTACCGGCCCGTGT
TGACCAAGGACGAGGCGGTGCCCCAGGGCCTGCCAGGGTGGGTGGAGACG
AACGAGGACGACGCAGTGGCGGTGCGTCGGGTCGGGACCTTGACCGTGCT
TCACGGGGCGTTTACCTGGGACAAGCTGGGCTTCAGTATGCACGCGAACG
AGGGCGTGCTGGCCGTGGGGTGGGAACAGGCCTGCGTCGGTCCGGGGCCG
TGGGACCTCGCTTTGCTCTTAGCCACGGCGCGTCGTGATGGTGAAGAGAG
CGAATTCAAGGGGTCAGGCAAGAGGGAAGACCAAAATGACGATGACGCCG
AGATGACAGCCCTGTCCCTTTACCATCAAATATTAATGGAGGGCGGTGTG
GAGCAGTACGACTTCGAACGGCTGCTTTTTGAGTACCAACGGGCAAAGGC
GGGCCTGGCCCCAGAGCTTTTGAGTACTATTGCGCGGCACCttgacgaag
aggatgatgTCAAGGGCAAAAAATTAGGAGATACAGCGCAGGATGCTTAT
TGCATGTCCTTAAGAAATGCTCTGGAGGCCTCGCTGGATCTCTTGGACGG
GTAA

Synonyms

Publications