rna3105, rna3105 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3105
Unique Name	rna3105
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1645
Alignment location	CM002460.1:725824..727623 +

Link to JBrowse

Properties


Property Name	Value
Product	solute carrier family 25 member 42
Orig transcript id	gnl\|cribi\|Naga_100015g57.6407.mrna
Orig protein id	gnl\|cribi\|Naga_100015g57.6407
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:725824..727623 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g57	gene2983	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3105	rna3105-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27591.1	cds3097	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:725824..727623+
coding sequence from alignment at CM002460.1:725824..727623+

mRNA sequence

>rna3105 ID=rna3105|Name=rna3105|organism=Nannochloropsis gaditana|type=mRNA|length=1645bp
CCTTTATGAGTCTTACATGAAACGACATAACGTGATCGCTATCGCTTACT
CCTTCTTCGCAATGTTAAGGACCTGAGGGAGTGTACACCAACTAGTTCTC
TTATTTGCCACAAGATCGTAACAAAAATATGAAAAGAACATCGATCATAC
TTGTTGCAGTCACTCTAGTGGCTCTGCCTTGGGCCACCAGCGCTTCTAAC
GTATCTGATGCAAATCCTCTCGCGGCTGGCCAAAAAGTTTGCAGCAAAAG
GCAACTCAAGAGCTTTTTAGGGTGCGCTTATGCCGAGAAAGGTAGCGCAA
GCATTTGGCCCAGTCTCTCGCCTTGTGAAGGGCAACTGGGAAAGTGTCGA
GGATGGGCTTATGATGGACTTGACGCGCAAATTGTGACAAACGAGGACGA
GCCTTTCCTTGGAGTCGCAGGGCTTTCGAAAAACGCAAGGTACTTTGGCT
ACTATGCGTATGGTGATCTGGACCCCAAGAAATACGTGCCATTCAATTGC
AATTACGTATCCAAGCTCTTCCAAAAGGTGGGGCGTTGTATTTTGGGTAA
AACAACGACAGCAAGCCAGGGTTCTTTGTTTTTTGAGAGAGTGGTGGTCG
AATGCATTAGGTCTGTTTTGGACCCTGCGGAGCAGTCGTTCGTCTTCACT
CAGACCGATTATACTAGGAGTGCCCCGATGGAGCCTGGGCTTGTAACTTA
TTTCTACATAAGCCCCTTCTTGTTGCTGGCTAATAAAGAAGCTACGGAAG
ATTGCCCAGTTGTTGAGGGCTATTTCAAAAAAAATGGATCTCCATCTGTT
CGTATTCTTAAAGCTGGTGCGAAATTGACCTATCAGGAATAAAGCTATAC
ACTTTGATTTAAATGCGCGGCCGAGGCATGTCCCGTATAGAGACAGAGAC
ACATGCCATGAAGATGTCATTGACCGAACGATTGGAGGTCTGGCTTACTG
CGTGGTATGTCTGTGGTATGTGAGGAGCGGTAGTGGAAATTGTGGCGATT
TAAATGACGAGTTGTGTTGCTGAGGTGTCGGGGGGGGGAGATATACAAGA
TGCAGCAGCTAATACTATCCATTCAGTGTTTTAATGATGACGGAGGGCCA
TGGTCGACCGTGCGTTAAAATTTTGTATGGCTTTCATCCGCCATGATAGT
GAAAGTGTGGCATGATTCCGGATCTAAACCGGACAATAAGTTAACCACGG
AGCGTTTTTTGAATTCAACTGTCGCGTGGAAGAGGATTGGCTTAGCAGCA
AGGGAACGAGAAAATGAAATTATGGAGGATAAGAACACAAAAAAAGGAAA
GTAAGGAAGAAAATGTTTACATGGCGTGAAAGCTTTTGTGCGCTTACTCT
TTTCAATTCCATCTCACGAGAGGTCGATGCCGCATTAAAACTAAAAGGAG
AAAAGTGAGAAATACGCTAACGCTGCGTGTCAGATGGTGTTTTGGTCAAA
TTCATCTCTTCTGAAAACTAACCTCCCCTTCTACGCAGAACAAAGTGACT
ACCCGGAGGACAACGAATCATCGAGATCGTGGACCCTTCATTCGCAAATT
GACTGACAAATCTGTAATGATACTTTGCTTGCACACGTACATACCATGCA
CAGGGCCTCTGCTGACCTGAGGAACCCGGTGTATATTTGGAGCGG

protein sequence of rna3105

>rna3105-protein ID=rna3105-protein|Name=rna3105|organism=Nannochloropsis gaditana|type=polypeptide|length=432bp
MELPAPSTKRFDAPRRDTGNMRVAVENVEEQPVHMPLGSATHFENAISTA
KSIMAGGLAGMVAKSVVAPVDRIKILFQVSSEEFCLRKVLFIMRRIYHEE
GFGGLWKGNSATMLRVFPYAGIQFMTFDTVKAYILKMNGEVEGGQLTNLE
SLFAGSFAGFVSCTCTYPLDFARARLAVEGAQGAQYLRRNMPAGGRGVGV
ERASTSSVSHAVQDGKKTGGKLGSKGVLANGAGRAHHTVLDVFKAAYREG
GILSLYRGVTPTLLGILPYAGIAFTINDKANHQIHRLTGEEPSTLQKLGC
GAFAGLAAQSATYPLDVVRRRMQTAGVKSPEMPVQRGDVEGREKGYAAVG
AGEPRRGHVPLRATPSSGYDPLSASMRAVLREVYTQEGVKGLFKGLSMNW
IKGPVALGISFTTFDFLKRLLNVQQPGKKAPI

mRNA from alignment at CM002460.1:725824..727623+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3105 ID=rna3105|Name=rna3105|organism=Nannochloropsis gaditana|type=mRNA|length=1800bp|location=Sequence derived from alignment at CM002460.1:725824..727623+ (Nannochloropsis gaditana)
CGTCAGTCTATTTGAAATTTTGTTGAGCTGTACCTTAAAGTCATGCCAGG
TGCATCGAAGTCGTTTGCTTGGTGTGAGACAaatccccttctctttttat
TCACTGACACGCAGCACTTCCTTTCCCTATATTAACGCCGCTTTTTAATG
CGAAGATGGAGCTCCCTGCGCCATCGACCAAGCGGTTCGACGCACCACGG
AGGGATACTGGAAATATGAGGGTGGCTGTAgagaacgtggaggagcagcc
tgTGCACATGCCTCTTGGCTCAGCCACGCATTTCGAAAATGCGATCAGTA
CCGCCAAGTCTATTATGGCAGGTAGGTTGACGTGGCGAATAATGATGCAC
GATGTCATTGTACGTCATAGAATGTATTTGTAGATAAAGGAAAAAAACTT
ATGTGGTGATTGAACGCGAATGGAAATCGGATATACATGCTAGCTTTCGC
AGTGTCTCTAAAGATCGCTCCTGGAGGAGAGCCTTCTCTCACACCCCATC
CGCCTACTTGGTCTGATTTCCCAATATACAGGAGGACTGGCAGGCATGGT
GGCGAAAAGTGTTGTGGCACCAGTGGACCGGATCAAAATTTTGTTTCAAG
TTTCTTCTGAGGAATTTTGTCTGCGGAAAGTCCTCTTTATAATGAGGCGG
ATATACCATGAGGAGGGCTTCGGAGGGCTATGGAAGGGGAACAGCGCAAC
TATGCTACGAGTGTTCCCCTATGCCGGGATTCAATTCATGACTTTCGACA
CCGTGAAGGCGTACATTTTGAAGATgaacggggaggttgaaggtGGGCAG
CTGACGAACTTGGAGAGCCTGTTCGCTGGGTCTTTTGCGGGGTTCGTTTC
TTGTACTTGTACGTATCCTTTGGATTTCGCAAGAGCTCggctggccgtgg
agggtGCACAAGGGGCCCAGTACCTTCGGAGAAATATGCCGGCTGGTGGC
AGAGGAGTGGGGGTCGAAAGAGCCTCCACGTCGTCAGTATCACATGCAGT
TCAGGATGGGAAAAAGACTGGAGGAAAGCTGGGAAGTAAGGGGGTTCTCG
CGAATGGTGCTGGTCGCGCCCATCACACCGTCCTGGATGTGTTCAAGGCT
GCCtaccgagaaggagggatccTCTCTCTGTACAGAGGCGTCACCCCTAC
CTTACTGGGCATTTTGCCTTACGCCGGCATAGCCTTCACAATAAATGACA
AGGCGAATCATCAGATCCATCGTTTGACCGGGGAGGAGCCAAGCACTCTG
CAAAAGCTCGGGTGCGGTGCCTTTGCGGGGCTCGCCGCCCAGTCGGCCAC
CTACCCGCTGGACGTGGTCCGGAGACGGATGCAGACGGCTGGAGTGAAGT
CTCCGGAAATGCCTGTGCAGAGAGGGGAtgtagaagggagggaaaaagga
taTGCAGCTGTAGGAGCAGGGGAACCCCGGCGTGGCCATGTGCCCCTCCG
AGCAACACCGTCTAGTGGGTACGACCCGCTGTCAGCAAGCATGCGGGCGG
TACTTCGGGAAGTATACACACAGGAAGGAGTAAAAGGCTTGTTCAAAGGC
TTGTCGATGAATTGGATAAAGGGGCCTGTGGCTTTGGGGATAAGCTTCAC
AACTTTTGATTTCTTAAAACGTCTTCTCAACGTGCAACAGCCGGGAAAGA
AGGCACCGATATAGTATGATTggggccggcggaggaggagtacgggAGAC
AAGGTTTTTAAAGCAGCGGCTTTGAAACAGTAAATGACAAAATCAAATCA
TATCGCCATGTACTTGAGATGTTGTGTCAGTAAGATGAAAAATTGATTGA

Coding sequence (CDS) from alignment at CM002460.1:725824..727623+

>rna3105 ID=rna3105|Name=rna3105|organism=Nannochloropsis gaditana|type=CDS|length=2598bp|location=Sequence derived from alignment at CM002460.1:725824..727623+ (Nannochloropsis gaditana)
ATGGAGCTCCCTGCGCCATCGACCAAGCGGTTCGACGCACCACGGAGGGA
TACTGGAAATATGAGGGTGGCTGTAgagaacgtggaggagcagcctgTGC
ACATGCCTCTTGGCTCAGCCACGCATTTCGAAAATGCGATCAGTACCGCC
AAGTCTATTATGGCAGGAGGACTGGCAGGCATGGTGGCGAAAAGTGTTGT
GGCACCAGTGGACCGGATCAAAATTTTGTTTCAAGTTTCTTCTGAGGAAT
TTTGTCTGCGGAAAGTCCTCTTTATAATGAGGCGGATATACCATGAGGAG
GGCTTCGGAGGGCTATGGAAGGGGAACAGCGCAACTATGCTACGAGTGTT
CCCCTATGCCGGGATTCAATTCATGACTTTCGACACCGTGAAGGCGTACA
TTTTGAAGATgaacggggaggttgaaggtGGGCAGCTGACGAACTTGGAG
AGCCTGTTCGCTGGGTCTTTTGCGGGGTTCGTTTCTTGTACTTGTACGTA
TCCTTTGGATTTCGCAAGAGCTCggctggccgtggagggtGCACAAGGGG
CCCAGTACCTTCGGAGAAATATGCCGGCTGGTGGCAGAGGAGTGGGGGTC
GAAAGAGCCTCCACGTCGTCAGTATCACATGCAGTTCAGGATGGGAAAAA
GACTGGAGGAAAGCTGGGAAGTAAGGGGGTTCTCGCGAATGGTGCTGGTC
GCGCCCATCACACCGTCCTGGATGTGTTCAAGGCTGCCtaccgagaagga
gggatccTCTCTCTGTACAGAGGCGTCACCCCTACCTTACTGGGCATTTT
GCCTTACGCCGGCATAGCCTTCACAATAAATGACAAGGCGAATCATCAGA
TCCATCGTTTGACCGGGGAGGAGCCAAGCACTCTGCAAAAGCTCGGGTGC
GGTGCCTTTGCGGGGCTCGCCGCCCAGTCGGCCACCTACCCGCTGGACGT
GGTCCGGAGACGGATGCAGACGGCTGGAGTGAAGTCTCCGGAAATGCCTG
TGCAGAGAGGGGAtgtagaagggagggaaaaaggataTGCAGCTGTAGGA
GCAGGGGAACCCCGGCGTGGCCATGTGCCCCTCCGAGCAACACCGTCTAG
TGGGTACGACCCGCTGTCAGCAAGCATGCGGGCGGTACTTCGGGAAGTAT
ACACACAGGAAGGAGTAAAAGGCTTGTTCAAAGGCTTGTCGATGAATTGG
ATAAAGGGGCCTGTGGCTTTGGGGATAAGCTTCACAACTTTTGATTTCTT
AAAACGTCTTCTCAACGTGCAACAGCCGGGAAAGAAGGCACCGATATAGA
TGGAGCTCCCTGCGCCATCGACCAAGCGGTTCGACGCACCACGGAGGGAT
ACTGGAAATATGAGGGTGGCTGTAgagaacgtggaggagcagcctgTGCA
CATGCCTCTTGGCTCAGCCACGCATTTCGAAAATGCGATCAGTACCGCCA
AGTCTATTATGGCAGGAGGACTGGCAGGCATGGTGGCGAAAAGTGTTGTG
GCACCAGTGGACCGGATCAAAATTTTGTTTCAAGTTTCTTCTGAGGAATT
TTGTCTGCGGAAAGTCCTCTTTATAATGAGGCGGATATACCATGAGGAGG
GCTTCGGAGGGCTATGGAAGGGGAACAGCGCAACTATGCTACGAGTGTTC
CCCTATGCCGGGATTCAATTCATGACTTTCGACACCGTGAAGGCGTACAT
TTTGAAGATgaacggggaggttgaaggtGGGCAGCTGACGAACTTGGAGA
GCCTGTTCGCTGGGTCTTTTGCGGGGTTCGTTTCTTGTACTTGTACGTAT
CCTTTGGATTTCGCAAGAGCTCggctggccgtggagggtGCACAAGGGGC
CCAGTACCTTCGGAGAAATATGCCGGCTGGTGGCAGAGGAGTGGGGGTCG
AAAGAGCCTCCACGTCGTCAGTATCACATGCAGTTCAGGATGGGAAAAAG
ACTGGAGGAAAGCTGGGAAGTAAGGGGGTTCTCGCGAATGGTGCTGGTCG
CGCCCATCACACCGTCCTGGATGTGTTCAAGGCTGCCtaccgagaaggag
ggatccTCTCTCTGTACAGAGGCGTCACCCCTACCTTACTGGGCATTTTG
CCTTACGCCGGCATAGCCTTCACAATAAATGACAAGGCGAATCATCAGAT
CCATCGTTTGACCGGGGAGGAGCCAAGCACTCTGCAAAAGCTCGGGTGCG
GTGCCTTTGCGGGGCTCGCCGCCCAGTCGGCCACCTACCCGCTGGACGTG
GTCCGGAGACGGATGCAGACGGCTGGAGTGAAGTCTCCGGAAATGCCTGT
GCAGAGAGGGGAtgtagaagggagggaaaaaggataTGCAGCTGTAGGAG
CAGGGGAACCCCGGCGTGGCCATGTGCCCCTCCGAGCAACACCGTCTAGT
GGGTACGACCCGCTGTCAGCAAGCATGCGGGCGGTACTTCGGGAAGTATA
CACACAGGAAGGAGTAAAAGGCTTGTTCAAAGGCTTGTCGATGAATTGGA
TAAAGGGGCCTGTGGCTTTGGGGATAAGCTTCACAACTTTTGATTTCTTA
AAACGTCTTCTCAACGTGCAACAGCCGGGAAAGAAGGCACCGATATAG

Synonyms

Publications