|
|
Properties
| Property Name | Value |
|---|
| Product | major intrinsic protein |
| Orig transcript id | gnl|cribi|Naga_100015g59.6387.mrna |
| Orig protein id | gnl|cribi|Naga_100015g59.6387 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:721095..723268 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3103 ID=rna3103|Name=rna3103|organism=Nannochloropsis gaditana|type=mRNA|length=2885bp
AACCCAAGTTTGAGCTTTGGATATCAATGGTGTCGCATGGGGAAAAAATT
GTTTGCGGTGGTATCTTTGACCGATAGACTGGAAACCTGCATTTGAAAAT
GAGAATGCATTCTGTCTCACCACTATCCTCTTATCACCCCACCAATTCCA
CTCACTTTATCTCCCCCTCCATTTTCATTTCTGGACACAAGTGCCAATGG
ACGGCTGCCGCAGCAACAGTAGCAGTGCCAGCGGAAACTCTCGTATGAGG
AGCGATGCCCAAAAAATGAAGTATGTCTGTGTGACGGGTGGCGTTGTGAG
CGGCCTAGGAAAAGGTACGATAACAGACTGTACTCCACCAGGCACACTAT
CCCTTCTACCTGCTGTACCTGTCGCTATACTGCAAATTTATGGCTACTAA
ACGGACCCTTTACCTTTTTTTTCATCAAAGCCCCGTCATTCACTTCCATC
TTTTCGTCCCAACCACTGTCTAGAAGCGTATCCATCGTTCTTGTCCGTCT
AATCACACCATCCGTCCCCCTCAGGCATTACCATCAGCTCTATCGGCCGC
CTTCTCAAGCAAAGTGGCCTCCGCGTCACGTCCATTAAGATCGATCCGTA
CTTGAACACAGACGCGGGCACCATGTCGCCCTTCGAGCACGGCGAAGTCT
TCGTACTTGATGACGGGGGGGAGGTGGACTTGGACCTTGGAAACTACGAA
AGATTCCTTTCCCTCACCCTGGGTAAGGACCACAACATCACCACGGGGAA
GGTTTACAACGAGGTGATTCTCCGGGAGCGCCGCGGAGACTACCTCGGGA
AGACGGTCCAGGTGGTACCCCACGTGACGAACGAAATCCAAGACTGGATC
GAGCGCGTAGCCGTGCTGCCTGTGGATGGGAGCCAAGAAGCGCCAGAGAT
ATGCCTGGTGGAGGTGGGTGGGACGGTCGGTGACATCGAAAGCAGCGTCT
TTCTGGAAGCCTTGCGCCAGTTTCAATTTCGGGTTGGCCGTGAGAATTTC
TGCCTCATTTTCGTGTCCCTGGTCCCCGTCTTGGGCTCGGTGGGGGAGCA
GAAAACCAAGCCTACTCAGCATGGGGTCAAGGAGCTTCGTTCGGTGGGCC
TGAGCCCGGACGTGATCATTTGCCGCTCCTCTAACCGGGTGGAACTCTCG
ACGCGGGAGAAAATATCCGTCTTCTGCCACTGTCCTCCCTCCCACGTCCT
TTCCGTCCATGACGTCAGCAACATTTATCATGTGCCCATCATTTTAGCCG
AGCAGAACCTGCACGGCATACTCCGTGATCATTTGAAGCTGGAGAGGATC
ATGACGCCCGAGCCCGATTTGGTCCGATGGACGGAGCTGGCGACTTCGGT
CGACATCTTTGAGGAGCAGGTGAAAATCGCGATCGTAGGCAAGTACACCG
GCCTCTCGGACTCCTACCTGTCGGTCCTCAAGGCGCTCAAGCACGCGTCG
ATTGCGGCAAAGCGGGCCTTGGAGATCTGTTGGGTGGAGGCCTCGGACCT
GGAGCCGGAAACTCAGAAGACGGAGGAGGAGAAGCACGCGGCGGCCTGGA
AAGTAATTGAGGAAGTGGACGGTATCGTGGTCCCGGGCGGCTTTGGGAGC
CGGGGGGTGGAGGGTAAGGTCTTAACTGTGGAGTACGCGCGGAGGACGGG
GAAACCAATCTTGGGCGTCTGCCTGGGGATGCAGGTAATGGTGATCGAGC
ACTGTCGGAACGTGCTGGGCTTGCGCACGGCCACCAGCCAGGAGTTCGCC
GAGCAAGATAAGGACCAGGCGGAGGGTGCGAAGAAAGGAGACAGGGAGGA
AGAGACGTATGCGGTGGTATTCATGCCGGAAATCGACCCCGCCGTGATGG
GAGGGACCATGCGGTTAGGGGCAAGGCCCACTGACGTGCTGCTCAGAGAC
CGCCAGCAGAAACCCACCTTGGCCGGACAGCTCTACAAGCAGCGGGACGA
GGTCTGGGAGCGGCATCGACACCGGTACGAGGTCAATCCGGAGCTGTTGG
GCAGGCTGGAAGAAGCCGGGCTGCACTTTGTGGGGAGGGACAAAACGGGG
GCGCGGATGGAGATCGTAGAGCTGGACCGGGAGAAGCATCCCTTCTTCCT
CGGGACCCAGTATCATCCTGAGTTTCAGTCAAGGCCCTTGGAGCCATCCC
CTCCTTTCCTGGGCCTCATCTTAGCCGCTTCGGGGCAGTTACGCGAGTAC
TTGAGGACGAACGGAGCAAATTAGGCGTTGGGGAAGGAGGGAAGCGCCGG
TGGGTGGCTTACGGCTAGAGCGTGGGGTAGTGGAAAAGTGATCATGTGTA
AAGGCAGGAGAAGAAATTGGGTCATCGATGACAACGGGATAGACGATGAC
GTTGTCGTCTTTTGCAGAAAATGACCCGAAAGCATGCGTGTACTGTGCGG
CAAGACCAGGACTCCCGCAAAGTAGTCGAAACAAAAGTAGCGCCTGATGC
CCTCGACTGGAGATTCCCATGTTCTTGCGATGAAAAGGCCGTCTTCTTTC
TATTATTATCACATGTCGTGCAAGTCTTAAAGCCGATAATGCCTGATTTC
CCTCTATAGAAAATCGGGGCAGACGGGGAGAGATCCATCTATTTACATTA
CTGTCCGGTCATCGCTTTTTTACACTATTCTTCGCTTCAACAGCATAAAA
CAACGTCGATCCCCATCATGGTCCTCTATGGGGCCGAAACTCTAGGCCCT
CATCCGGAGACGCCTTCCTCGCTCCAGTCCTCCGGCCGCCGCATGATCAC
ATCAATGCAGGTTGTGCACAAGGGACACGTCTTTCTCCGCTTCAACCAGT
CGGAAGAGCACTCCGCGTGAAATCGGTGGAAGCAGGGGAGAACCCGCAAC
CGGTCTCCCTCGGCGTAGTCTTCCAAACATATGCG back to topprotein sequence of rna3103 >rna3103-protein ID=rna3103-protein|Name=rna3103|organism=Nannochloropsis gaditana|type=polypeptide|length=453bp
MRCLWFETMLGLALAQSTATSNLRLRRSIVVKDSFHRSYCSKVESATSFS
GLSLSKISAGVDQPKNAPLIMETLGTTIITVTAGLLGKADMSPGLKALGV
AAVLMPLIHAGARVSGANYNPSISVALLLLGKMPPAQCLFYISCQLVGAL
IGGVLTKVLLPQGAMDPSSVGTIATCVPEALFSFALILTALQTTVSKSQS
RNSFFGSAISIVVFLGVAFGAGMNPAVAGGLFAGAGHQKGLLARTILPLI
MTFPAAFFFRLTDIDETYAREMGLVPSVSAAFVRAYGPYLIELVGSFLLT
TTIGLALVTKNLPIPLAAGLALTFLAFGSGYVSGAHLNPAVSLGVYLRNA
RRIRMQKLAGYASIQVLGALASGAMLRYVVGAGALEGRYSVPRAVISCGQ
AFAVEALFTCMMVSTILHINASTGYQGNQCNGLVVGLALMGGLLITDVVG
GGC back to topmRNA from alignment at CM002460.1:721095..723268+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3103 ID=rna3103|Name=rna3103|organism=Nannochloropsis gaditana|type=mRNA|length=2174bp|location=Sequence derived from alignment at CM002460.1:721095..723268+ (Nannochloropsis gaditana)
TCGTGCCAGCGAGCAAATCACCTTGGAAGCCCAAAATTATGCTGCGAATA
AGGCTACTCATACATGAGACAAAGAATTTAATGGCAAATTGTTCCAAAAT
AATTTACATTTGACAATTATCTTCTCCCCTTCACACCACACCAGTCGAAC
AAGACCTTGGTCCTGATCTGggaccctctcttccctcttggaTTTAAACT
TCTACATAGTTGCCGCGACCTGCATAATGCGATGCCTTTGGTTCGAAACA
ATGTTGGGTTTAGCTCTTGCACAGTCGACAGCAACGTCAAACCTCCGCCT
CCGAAGGAGCATCGTGGTAAAGGTATCCTGCCGCTCGTTCATCCTGCATC
TCCATCATTATTACAACCAGTGTAACCACAGGGGCACGTTTCCACATACT
AACATCCCAGGATTCCTTTCACCGAAGTTACTGTTCAAAGGTGGAGTCAG
CTACGAGTTTCTCGGGGCTCTCCTTGTCCAAGATCAGTGCAGGCGTCGAT
CAACCAAAGAACGCTCCTCTTATTATGGAGACTTTAGGCACAACCATTAT
AACAGTCACTGCTGGTCTACTTGGGAAAGCTGATATGTCACCAGGATTGA
AGGCTCTTGGCGTAGCGGCTGTTCTTATGCCTCTGATTCATGCGGGAGCC
CGAGTCAGCGGCGCGAACTACAACCCAAGCATTTCAGTGGCTTTGCTTCT
CCTTGGGAAGATGCCTCCCGCACAATGTCTTTTTTATATCAGCTGTCAGC
TTGTTGGTGCTCTAATAGGAGGGGTTTTGACCAAAGTATTGCTCCCTCAA
GGTGCCATGGACCCATCCTCGGTCGGAACCATAGCCACCTGTGTACCGGA
AgcgctcttttccttcgcccTGATCCTAACCGCACTACAGACTACAGTAT
CAAAATCACAATCACGAAACAGTTTTTTTGGCTCCGCTATTTCTATTGTC
GTATTTTTGGGTGTAGCATTTGGTGCAGGGATGAATCCTGCTGTTGCAGG
AGGTCTATTTGCTGGTGCCGGGCATCAGAAAGGCCTTCTCGCTCGTACAA
TCCTTCCCTTGATTATGACATTTCCTgctgccttcttcttccggcTGACA
GACATTGATGAAACTTATGCAAGGGAAATGGGACTCGTTCCGTCCGTATC
AGCAGCTTTTGTGCGGGCATACGGCCCGTACTTGATCGAGTTGGTGGGAA
GCTTTCTCCTGACAACAACCATAGGCTTGGCATTGGTCACAAAGAACCTT
CCGATCCCATTGGCTGCTGGACTTGCCCTTACATTTTTAGCCTTTGGATC
CGGGTACGTGAGCGGCGCCCATCTCAACCCTGCCGTGAGTCTGGGCGTGT
ATCTACGCAACGCAAGACGCATTAGGATGCAGAAGCTCGCAGGCTATGCA
AGTATCCAGGTTTTGGGCGCCCTTGCTTCCGGAGCAATGCTTCGGTATGT
TGTGGGTGCTGGAGCTCTTGAAGGCAGGTATTCTGTTCCTCGAGCGGTAA
TTTCCTGCGGACAGGCCTTTGCTGTCGAGGCACTCTTTACCTGTATGATG
GTCTCTACCATCCTCCACATAAATGCGTCCACAGGATACCAAGGCAATCA
GTGTAATGGGTTGGTCGTTGGGCTTGCACTAATGGGCGGTCTTCTTATAA
CAGatgtggtgggggggggttgCTGAACCCTGCAGCGGTACTTGGCCTAT
CTGTGAGCAACGTAGCATTTGAGAGGCACGCACGACGCAGAGTGGCGGTT
TTCATAGGAGCTCCTTTTGTGGGTGCGATTTTGGGAAACTTGACTGTCAT
GCTGACTTCGCCACCCGAAATAGGGAAGAAGTGAGAAAAAGAGCATTCGA
GAATCATGGTATCGTGGCAGGTCTAGCAGTGCATAAGGGTAAATCGTCGA
ATGGTCGACGATAACGAAGGAAAGTTGGAGGATGTAAAGTGCAAAGTAGA
TAAAATAGATGATGGAAAAGCTCAAAAATGACTATAACAGGTTGGGAAAG
AGGATaagcaagaaaatggaaTGAAATTATAAGGGTTTAAAGTGAAGAAG
CACTGTATTACAACTGGAAATGCGAACAAAGGTACACGAGACAGAAAAAT
ATCAAAAGAGGATTCagcacgtggaggaaaatgaaaatAGGAAATGAATT
TCAAGAGATCTATGAAGGCATTGA back to topCoding sequence (CDS) from alignment at CM002460.1:721095..723268+ >rna3103 ID=rna3103|Name=rna3103|organism=Nannochloropsis gaditana|type=CDS|length=2724bp|location=Sequence derived from alignment at CM002460.1:721095..723268+ (Nannochloropsis gaditana)
ATGCGATGCCTTTGGTTCGAAACAATGTTGGGTTTAGCTCTTGCACAGTC
GACAGCAACGTCAAACCTCCGCCTCCGAAGGAGCATCGTGGTAAAGGATT
CCTTTCACCGAAGTTACTGTTCAAAGGTGGAGTCAGCTACGAGTTTCTCG
GGGCTCTCCTTGTCCAAGATCAGTGCAGGCGTCGATCAACCAAAGAACGC
TCCTCTTATTATGGAGACTTTAGGCACAACCATTATAACAGTCACTGCTG
GTCTACTTGGGAAAGCTGATATGTCACCAGGATTGAAGGCTCTTGGCGTA
GCGGCTGTTCTTATGCCTCTGATTCATGCGGGAGCCCGAGTCAGCGGCGC
GAACTACAACCCAAGCATTTCAGTGGCTTTGCTTCTCCTTGGGAAGATGC
CTCCCGCACAATGTCTTTTTTATATCAGCTGTCAGCTTGTTGGTGCTCTA
ATAGGAGGGGTTTTGACCAAAGTATTGCTCCCTCAAGGTGCCATGGACCC
ATCCTCGGTCGGAACCATAGCCACCTGTGTACCGGAAgcgctcttttcct
tcgcccTGATCCTAACCGCACTACAGACTACAGTATCAAAATCACAATCA
CGAAACAGTTTTTTTGGCTCCGCTATTTCTATTGTCGTATTTTTGGGTGT
AGCATTTGGTGCAGGGATGAATCCTGCTGTTGCAGGAGGTCTATTTGCTG
GTGCCGGGCATCAGAAAGGCCTTCTCGCTCGTACAATCCTTCCCTTGATT
ATGACATTTCCTgctgccttcttcttccggcTGACAGACATTGATGAAAC
TTATGCAAGGGAAATGGGACTCGTTCCGTCCGTATCAGCAGCTTTTGTGC
GGGCATACGGCCCGTACTTGATCGAGTTGGTGGGAAGCTTTCTCCTGACA
ACAACCATAGGCTTGGCATTGGTCACAAAGAACCTTCCGATCCCATTGGC
TGCTGGACTTGCCCTTACATTTTTAGCCTTTGGATCCGGGTACGTGAGCG
GCGCCCATCTCAACCCTGCCGTGAGTCTGGGCGTGTATCTACGCAACGCA
AGACGCATTAGGATGCAGAAGCTCGCAGGCTATGCAAGTATCCAGGTTTT
GGGCGCCCTTGCTTCCGGAGCAATGCTTCGGTATGTTGTGGGTGCTGGAG
CTCTTGAAGGCAGGTATTCTGTTCCTCGAGCGGTAATTTCCTGCGGACAG
GCCTTTGCTGTCGAGGCACTCTTTACCTGTATGATGGTCTCTACCATCCT
CCACATAAATGCGTCCACAGGATACCAAGGCAATCAGTGTAATGGGTTGG
TCGTTGGGCTTGCACTAATGGGCGGTCTTCTTATAACAGatgtggtgggg
gggggttgCTGAATGCGATGCCTTTGGTTCGAAACAATGTTGGGTTTAGC
TCTTGCACAGTCGACAGCAACGTCAAACCTCCGCCTCCGAAGGAGCATCG
TGGTAAAGGATTCCTTTCACCGAAGTTACTGTTCAAAGGTGGAGTCAGCT
ACGAGTTTCTCGGGGCTCTCCTTGTCCAAGATCAGTGCAGGCGTCGATCA
ACCAAAGAACGCTCCTCTTATTATGGAGACTTTAGGCACAACCATTATAA
CAGTCACTGCTGGTCTACTTGGGAAAGCTGATATGTCACCAGGATTGAAG
GCTCTTGGCGTAGCGGCTGTTCTTATGCCTCTGATTCATGCGGGAGCCCG
AGTCAGCGGCGCGAACTACAACCCAAGCATTTCAGTGGCTTTGCTTCTCC
TTGGGAAGATGCCTCCCGCACAATGTCTTTTTTATATCAGCTGTCAGCTT
GTTGGTGCTCTAATAGGAGGGGTTTTGACCAAAGTATTGCTCCCTCAAGG
TGCCATGGACCCATCCTCGGTCGGAACCATAGCCACCTGTGTACCGGAAg
cgctcttttccttcgcccTGATCCTAACCGCACTACAGACTACAGTATCA
AAATCACAATCACGAAACAGTTTTTTTGGCTCCGCTATTTCTATTGTCGT
ATTTTTGGGTGTAGCATTTGGTGCAGGGATGAATCCTGCTGTTGCAGGAG
GTCTATTTGCTGGTGCCGGGCATCAGAAAGGCCTTCTCGCTCGTACAATC
CTTCCCTTGATTATGACATTTCCTgctgccttcttcttccggcTGACAGA
CATTGATGAAACTTATGCAAGGGAAATGGGACTCGTTCCGTCCGTATCAG
CAGCTTTTGTGCGGGCATACGGCCCGTACTTGATCGAGTTGGTGGGAAGC
TTTCTCCTGACAACAACCATAGGCTTGGCATTGGTCACAAAGAACCTTCC
GATCCCATTGGCTGCTGGACTTGCCCTTACATTTTTAGCCTTTGGATCCG
GGTACGTGAGCGGCGCCCATCTCAACCCTGCCGTGAGTCTGGGCGTGTAT
CTACGCAACGCAAGACGCATTAGGATGCAGAAGCTCGCAGGCTATGCAAG
TATCCAGGTTTTGGGCGCCCTTGCTTCCGGAGCAATGCTTCGGTATGTTG
TGGGTGCTGGAGCTCTTGAAGGCAGGTATTCTGTTCCTCGAGCGGTAATT
TCCTGCGGACAGGCCTTTGCTGTCGAGGCACTCTTTACCTGTATGATGGT
CTCTACCATCCTCCACATAAATGCGTCCACAGGATACCAAGGCAATCAGT
GTAATGGGTTGGTCGTTGGGCTTGCACTAATGGGCGGTCTTCTTATAACA
GatgtggtgggggggggttgCTGA back to top
|