rna3102, rna3102 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3102
Unique Name	rna3102
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1801
Alignment location	CM002460.1:717117..720001 -

Link to JBrowse

Properties


Property Name	Value
Product	ctp synthase
Orig transcript id	gnl\|cribi\|Naga_100015g60.6391.mrna
Orig protein id	gnl\|cribi\|Naga_100015g60.6391
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:717117..720001 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g60	gene2980	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27575.1	cds3094	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3102	rna3102-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:717117..720001-
coding sequence from alignment at CM002460.1:717117..720001-

mRNA sequence

>rna3102 ID=rna3102|Name=rna3102|organism=Nannochloropsis gaditana|type=mRNA|length=1801bp
GATGCGATTCAGCCTGGATAACGTGAAGGGAGCCGAGAAGAAATGCAACA
GATCGAGTTGAAAGCACGCCCATCGTGCGCCTAATTGAAAGCCACAGGCA
ATCACACGTAGACTGTGAGCGGCAGTTTTTGGGTTTCATGCTGACGTGAC
CACGTTATGTTTGCATGGGTATACACGTGTGTTGTCATGTCCTTCATAGG
GAGCGAATGATTTTTGCGATTACTGGGCTGTTGCCTTGCCTTCATAGGGG
ACTCCCCGGAGGAGCGGCAAGAAGCGTCATCTTTCCGTCAACTCTTCCCC
ACTGATGCCCCCTGCACAGGCGTTTCTGTCGTAGCTGAAATCATGGGCAA
CCGAAACACATATCCTGCAGAGCACCACAGTTCGACAAGGAGCACAAGGT
CTGCTTCACCATCATCTACGGCAGCTGAATCGCAGGGCAGCGGCAGGAGA
AGTAGTGGGGAACGGCCAAATGGCAATTTTTTATACCAATCTACCAGCGC
GGCGGGCACCTCTTCTCCGTCGCATCAAACAATGTGCCCTCAATGTCAAC
GAGTACTCCTAATCCCACCAAATGCGCCCTTGTTTCGGTGTCCTTGCGGC
GTTTTGTTCAGGACAGAGACATTGGATCCCCATCGGAGCTTCGAACGACC
TACGAGTGGCCTTCTGGGAGCTACCGGTTTGATGGGCCGCTCTGTTATTT
GCCGACGCTGCCGTCGACTTTCGATGCTACCGCAAGATGGTTCCAGTGAT
GGCATTGCTATATGTCCATGCGGCTCTCCAGCTTTGCCGCTGAATGACAT
GGTCATGTCCTTGCTGGCCGAGGGTGAACTGGGCTTGTTGGGACGTGGGC
GACACGGGCGCCGGAGGGCTTTATTTCGGCAAGGAGACGTGGAAGGAGCC
TCAGAGGACTTGATAGACTTGCTACCGACCTGCACGTTTTCGGCAGAGGC
AGCGGCGCGGGCAGCGACTGCCCGCTTGGGGGGGAAATCTCCGGCGCCCT
CCGGGGTCCAGGCTTCTGTGCTGGACGAGGGAGCGGGGAAGAATTGTTGC
GGGGAGAGGAAAAAGACATGTCACGTACCGCCCGAGGATTTCCATATGCT
CAAAGCAGGATCGATCAAAGCGGCAGAGGTGCCCGGGTCCACGCCTCCTT
TGAAAAAGGTAGATTCGCATGACGATGACGTTTCGTGTCGCATATGTTTG
GAAGACTACGCCGAGGGAGACCGGTTGCGGGTTCTCCCCTGCTTCCACCG
ATTTCACGCGGAGTGCTCTTCCGACTGGTTGAAGCGGAGAAAGACGTGTC
CCTTGTGCACAACCTGCATTGATGTGATCATGCGGCGGCCGGAGGACTGG
AGCGAGGAAGGCGTCTCCGGATGAGGGCCTAGAGTTTCGGCCCCATAGAG
GACCATGATGGGGATCGACGTTGTTTTATGCTGTTGAAGCGAAGAATAGT
GTAAAAAAGCGATGACCGGACAGTAATGTAAATAGATGGATCTCTCCCCG
TCTGCCCCGATTTTCTATAGAGGGAAATCAGGCATTATCGGCTTTAAGAC
TTGCACGACATGTGATAATAATAGAAAGAAGACGGCCTTTTCATCGCAAG
AACATGGGAATCTCCAGTCGAGGGCATCAGGCGCTACTTTTGTTTCGACT
ACTTTGCGGGAGTCCTGGTCTTGCCGCACAGTACACGCATGCTTTCGGGT
CATTTTCTGCAAAAGACGACAACGTCATCGTCTATCCCGTTGTCATCGAT
GACCCAATTTCTTCTCCTGCCTTTACACATGATCACTTTTCCACTACCCC
A

protein sequence of rna3102

>rna3102-protein ID=rna3102-protein|Name=rna3102|organism=Nannochloropsis gaditana|type=polypeptide|length=533bp
MSPFEHGEVFVLDDGGEVDLDLGNYERFLSLTLGKDHNITTGKVYNEVIL
RERRGDYLGKTVQVVPHVTNEIQDWIERVAVLPVDGSQEAPEICLVEVGG
TVGDIESSVFLEALRQFQFRVGRENFCLIFVSLVPVLGSVGEQKTKPTQH
GVKELRSVGLSPDVIICRSSNRVELSTREKISVFCHCPPSHVLSVHDVSN
IYHVPIILAEQNLHGILRDHLKLERIMTPEPDLVRWTELATSVDIFEEQV
KIAIVGKYTGLSDSYLSVLKALKHASIAAKRALEICWVEASDLEPETQKT
EEEKHAAAWKVIEEVDGIVVPGGFGSRGVEGKVLTVEYARRTGKPILGVC
LGMQVMVIEHCRNVLGLRTATSQEFAEQDKDQAEGAKKGDREEETYAVVF
MPEIDPAVMGGTMRLGARPTDVLLRDRQQKPTLAGQLYKQRDEVWERHRH
RYEVNPELLGRLEEAGLHFVGRDKTGARMEIVELDREKHPFFLGTQYHPE
FQSRPLEPSPPFLGLILAASGQLREYLRTNGAN

mRNA from alignment at CM002460.1:717117..720001-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3102 ID=rna3102|Name=rna3102|organism=Nannochloropsis gaditana|type=mRNA|length=2885bp|location=Sequence derived from alignment at CM002460.1:717117..720001- (Nannochloropsis gaditana)
AACCCAAGTTTGAGCTTTGGATATCAATGGTGTCGCATGGGGAAAAAATT
GTTTGCGGTGGTATCTTTGACCGATAGACTGGAAACCTGCATTTGAAAAT
GAGAATGCATTCTGTCTCACCACTATCCTCTTATCACCCCACCAATTCCA
CTCACTTTATCTCCCCCTCCATTTTCATTTCTGGACACAAGTGCCAATGG
ACGGCTGCCGCAGCAACAGTAGCAGTGCCAGCGGAAACTCTCGTATGAGG
AGCGATGCCCAAAAAATGAAGTATGTCTGTGTGACGGGTGGCGTTGTGAG
CGGCCTAGGAAAAGGTACGATAACAGACTGTACTCCACCAGGCACACTAT
CCCTTCTACCTGCTGTACCTGTCGCTATACTGCAAATTTATGGCTACTAA
ACGGACCCTTTACCTTTTTTTTCATCAAAGCCCCGTCATTCACTTCCATC
TTTTCGTCCCAACCACTGTCTAGAAGCGTATCCATCGTTCTTGTCCGTCT
AATCACACCATCCGTCCCCCTCAGGCATTACCATCAGCTCTATCGGCCGC
CTTCTCAAGCAAAGTGGCCTCCGCGTCACGTCCATTAAGATCGATCCGTA
CTTGAACACAGACGCGGGCACCATGTCGCCCTTCGAGCACGGCGAAGTCT
TCGTACTTGATGACGGGGGGGAGGTGGACTTGGACCTTGGAAACTACGAA
AGATTCCTTTCCCTCACCCTGGGTAAGGACCACAACATCACCACGGGGAA
GGTTTACAACGAGGTGATTCTCCGGGAGCGCCGCGGAGACTACCTCGGGA
AGACGGTCCAGGTGGTACCCCACGTGACGAACGAAATCCAAGACTGGATC
GAGCGCGTAGCCGTGCTGCCTGTGGATGGGAGCCAAGAAGCGCCAGAGAT
ATGCCTGGTGGAGGTGGGTGGGACGGTCGGTGACATCGAAAGCAGCGTCT
TTCTGGAAGCCTTGCGCCAGTTTCAATTTCGGGTTGGCCGTGAGAATTTC
TGCCTCATTTTCGTGTCCCTGGTCCCCGTCTTGGGCTCGGTGGGGGAGCA
GAAAACCAAGCCTACTCAGCATGGGGTCAAGGAGCTTCGTTCGGTGGGCC
TGAGCCCGGACGTGATCATTTGCCGCTCCTCTAACCGGGTGGAACTCTCG
ACGCGGGAGAAAATATCCGTCTTCTGCCACTGTCCTCCCTCCCACGTCCT
TTCCGTCCATGACGTCAGCAACATTTATCATGTGCCCATCATTTTAGCCG
AGCAGAACCTGCACGGCATACTCCGTGATCATTTGAAGCTGGAGAGGATC
ATGACGCCCGAGCCCGATTTGGTCCGATGGACGGAGCTGGCGACTTCGGT
CGACATCTTTGAGGAGCAGGTGAAAATCGCGATCGTAGGCAAGTACACCG
GCCTCTCGGACTCCTACCTGTCGGTCCTCAAGGCGCTCAAGCACGCGTCG
ATTGCGGCAAAGCGGGCCTTGGAGATCTGTTGGGTGGAGGCCTCGGACCT
GGAGCCGGAAACTCAGAAGACGGAGGAGGAGAAGCACGCGGCGGCCTGGA
AAGTAATTGAGGAAGTGGACGGTATCGTGGTCCCGGGCGGCTTTGGGAGC
CGGGGGGTGGAGGGTAAGGTCTTAACTGTGGAGTACGCGCGGAGGACGGG
GAAACCAATCTTGGGCGTCTGCCTGGGGATGCAGGTAATGGTGATCGAGC
ACTGTCGGAACGTGCTGGGCTTGCGCACGGCCACCAGCCAGGAGTTCGCC
GAGCAAGATAAGGACCAGGCGGAGGGTGCGAAGAAAGGAGACAGGGAGGA
AGAGACGTATGCGGTGGTATTCATGCCGGAAATCGACCCCGCCGTGATGG
GAGGGACCATGCGGTTAGGGGCAAGGCCCACTGACGTGCTGCTCAGAGAC
CGCCAGCAGAAACCCACCTTGGCCGGACAGCTCTACAAGCAGCGGGACGA
GGTCTGGGAGCGGCATCGACACCGGTACGAGGTCAATCCGGAGCTGTTGG
GCAGGCTGGAAGAAGCCGGGCTGCACTTTGTGGGGAGGGACAAAACGGGG
GCGCGGATGGAGATCGTAGAGCTGGACCGGGAGAAGCATCCCTTCTTCCT
CGGGACCCAGTATCATCCTGAGTTTCAGTCAAGGCCCTTGGAGCCATCCC
CTCCTTTCCTGGGCCTCATCTTAGCCGCTTCGGGGCAGTTACGCGAGTAC
TTGAGGACGAACGGAGCAAATTAGGCGTTGGGGAAGGAGGGAAGCGCCGG
TGGGTGGCTTACGGCTAGAGCGTGGGGTAGTGGAAAAGTGATCATGTGTA
AAGGCAGGAGAAGAAATTGGGTCATCGATGACAACGGGATAGACGATGAC
GTTGTCGTCTTTTGCAGAAAATGACCCGAAAGCATGCGTGTACTGTGCGG
CAAGACCAGGACTCCCGCAAAGTAGTCGAAACAAAAGTAGCGCCTGATGC
CCTCGACTGGAGATTCCCATGTTCTTGCGATGAAAAGGCCGTCTTCTTTC
TATTATTATCACATGTCGTGCAAGTCTTAAAGCCGATAATGCCTGATTTC
CCTCTATAGAAAATCGGGGCAGACGGGGAGAGATCCATCTATTTACATTA
CTGTCCGGTCATCGCTTTTTTACACTATTCTTCGCTTCAACAGCATAAAA
CAACGTCGATCCCCATCATGGTCCTCTATGGGGCCGAAACTCTAGGCCCT
CATCCGGAGACGCCTTCCTCGCTCCAGTCCTCCGGCCGCCGCATGATCAC
ATCAATGCAGGTTGTGCACAAGGGACACGTCTTTCTCCGCTTCAACCAGT
CGGAAGAGCACTCCGCGTGAAATCGGTGGAAGCAGGGGAGAACCCGCAAC
CGGTCTCCCTCGGCGTAGTCTTCCAAACATATGCG

Coding sequence (CDS) from alignment at CM002460.1:717117..720001-

>rna3102 ID=rna3102|Name=rna3102|organism=Nannochloropsis gaditana|type=CDS|length=1602bp|location=Sequence derived from alignment at CM002460.1:717117..720001- (Nannochloropsis gaditana)
ATGTCGCCCTTCGAGCACGGCGAAGTCTTCGTACTTGATGACGGGGGGGA
GGTGGACTTGGACCTTGGAAACTACGAAAGATTCCTTTCCCTCACCCTGG
GTAAGGACCACAACATCACCACGGGGAAGGTTTACAACGAGGTGATTCTC
CGGGAGCGCCGCGGAGACTACCTCGGGAAGACGGTCCAGGTGGTACCCCA
CGTGACGAACGAAATCCAAGACTGGATCGAGCGCGTAGCCGTGCTGCCTG
TGGATGGGAGCCAAGAAGCGCCAGAGATATGCCTGGTGGAGGTGGGTGGG
ACGGTCGGTGACATCGAAAGCAGCGTCTTTCTGGAAGCCTTGCGCCAGTT
TCAATTTCGGGTTGGCCGTGAGAATTTCTGCCTCATTTTCGTGTCCCTGG
TCCCCGTCTTGGGCTCGGTGGGGGAGCAGAAAACCAAGCCTACTCAGCAT
GGGGTCAAGGAGCTTCGTTCGGTGGGCCTGAGCCCGGACGTGATCATTTG
CCGCTCCTCTAACCGGGTGGAACTCTCGACGCGGGAGAAAATATCCGTCT
TCTGCCACTGTCCTCCCTCCCACGTCCTTTCCGTCCATGACGTCAGCAAC
ATTTATCATGTGCCCATCATTTTAGCCGAGCAGAACCTGCACGGCATACT
CCGTGATCATTTGAAGCTGGAGAGGATCATGACGCCCGAGCCCGATTTGG
TCCGATGGACGGAGCTGGCGACTTCGGTCGACATCTTTGAGGAGCAGGTG
AAAATCGCGATCGTAGGCAAGTACACCGGCCTCTCGGACTCCTACCTGTC
GGTCCTCAAGGCGCTCAAGCACGCGTCGATTGCGGCAAAGCGGGCCTTGG
AGATCTGTTGGGTGGAGGCCTCGGACCTGGAGCCGGAAACTCAGAAGACG
GAGGAGGAGAAGCACGCGGCGGCCTGGAAAGTAATTGAGGAAGTGGACGG
TATCGTGGTCCCGGGCGGCTTTGGGAGCCGGGGGGTGGAGGGTAAGGTCT
TAACTGTGGAGTACGCGCGGAGGACGGGGAAACCAATCTTGGGCGTCTGC
CTGGGGATGCAGGTAATGGTGATCGAGCACTGTCGGAACGTGCTGGGCTT
GCGCACGGCCACCAGCCAGGAGTTCGCCGAGCAAGATAAGGACCAGGCGG
AGGGTGCGAAGAAAGGAGACAGGGAGGAAGAGACGTATGCGGTGGTATTC
ATGCCGGAAATCGACCCCGCCGTGATGGGAGGGACCATGCGGTTAGGGGC
AAGGCCCACTGACGTGCTGCTCAGAGACCGCCAGCAGAAACCCACCTTGG
CCGGACAGCTCTACAAGCAGCGGGACGAGGTCTGGGAGCGGCATCGACAC
CGGTACGAGGTCAATCCGGAGCTGTTGGGCAGGCTGGAAGAAGCCGGGCT
GCACTTTGTGGGGAGGGACAAAACGGGGGCGCGGATGGAGATCGTAGAGC
TGGACCGGGAGAAGCATCCCTTCTTCCTCGGGACCCAGTATCATCCTGAG
TTTCAGTCAAGGCCCTTGGAGCCATCCCCTCCTTTCCTGGGCCTCATCTT
AGCCGCTTCGGGGCAGTTACGCGAGTACTTGAGGACGAACGGAGCAAATT
AG

Synonyms

Publications