rna3080, rna3080 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3080
Unique Name	rna3080
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1867
Alignment location	CM002460.1:663755..666115 -

Link to JBrowse

Properties


Property Name	Value
Product	cationic amino acid transporter
Orig transcript id	gnl\|cribi\|Naga_100069g20.5327.mrna
Orig protein id	gnl\|cribi\|Naga_100069g20.5327
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:663755..666115 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100069g20	gene2958	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27608.1	cds3072	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3080	rna3080-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:663755..666115-
coding sequence from alignment at CM002460.1:663755..666115-

mRNA sequence

>rna3080 ID=rna3080|Name=rna3080|organism=Nannochloropsis gaditana|type=mRNA|length=1867bp
ATGCTAGTTCACCGCCCTTGCCGGTATTTCCAGGAAGTCGAGGCACAGCT
TTCCTTCCTCGATACTCCCGACAGAAGGCTTGCTGTCCCAGCGGCACCAG
ATACACTTGTTGCCCCGTGCAAAAAGGCAAGCTACACAATGCCTGGGGAT
TTCCGATGTACCGGTACACCTTCCATATCGAAAAGACCAGGATCTCGTAC
TTCAACGTGGCGGCTCGCCGTGCTAGGTTTCTTTGGCATCATTGGTCGTC
CTCCAGTCGTGGCTTTCTACCTCCCCGTCCCCATCCCAGCCTCTCCCGCA
CACCGCCCTGCTAGCTTCCTTCCCTTACGCCCAAGCGCAAGAAAAATATC
GCGACATTTTACTCCACCAAGACAACAGGAGGCAGAGATCGAAATGCAGA
AGAAGCCGTTGCGTCCAACCTCCCTTCCTTTGGCTCTTCCCGGCCCATCA
TCCTCGCAATACGATGAATTGATGGATAATTTGTCAGATGATGAGAAATA
CAATATCCTACTTCAAAGTCGGGCATCGAGTCTGGTCCAGTTGCTGGGAA
AGAAAGGAAGAGGCATGGGAGGGAATTCCCGGTCGACATCGGAGGCGTTT
ACCCCCCTTTACAAGCTGGTGGAAGAGATGACGGACAAGGACATGCGCAT
CACGCTCAAAAGCTTCGCGGCCCTGATCGACGCTGCTTCGCTTTCTCGGG
ATTTGAATGTGATCCAGGAATGCCTGCTTCTGGCGCGTCGGAATGGAGTG
TCGCGCGCTTTTGCCCGGAGCGTCGGAACCCTAAACCCTCCTCCCCCCCT
CAGGGCAGCATCAGACAGGTACGACCTCTCACCCGTGCCCTCGGACGCCC
GCACCAGTGAATTGGCTGCAGGTGTAGCGGCCCTGACTGTCGTAGGGGGT
GCTTTATCAGTAGAGGCCGTCGGGCCTCTCCTCCACGCGGATACCACGGC
GGCCTCGGTGGTGTTGGGGGGAGCCGCCGTGATGGGAGTCTGGGACCTGA
CGCAGCGAAAAGGGCAAGAGCTGACGCTGGCTCTGGCCGGGATCAACCGG
CTCTTCCTTCGAGACCCGGAACGGGACGCCCACGTGCAAGCCGCGACCTT
TCTGAGCGCCTACCTCCTGGGGCTGCCCTGCTTCTGCTTCTCGCCCAACG
TGATGGAGGCGGTGAGGATGACTGCCCAGGTGCCGGCCTTCGCAGAGACC
CTCTCGTCCACGGCCGGGCTGAACAGACTCCTGGTGTACCTGCTCGCGCC
CGTGGCGGTGGAGGAGGCGAACTACGCCCAGTTGATGGCCTCGGACGCCC
GCCAGGCCAGGGCCTTACTCCAAGTTTTCATGGGGCGGGGGGAAGCGAGG
GGGCAGGAAGGGAGGGAGGAGGAGGTGCTCCTGCCATGGGCGTACGAAGA
AGCCAAACGTTTGTTGCGGAGTCACAGCGCCTTGCTAGAGCGATTGAAGC
AGCGGATGGAAAGCGGGGGAGCAACAGTCGGGGACTGTGTGGCGCTTCTG
GAGGGGGCGGTCCCCTCGGTCTGAGGAGGGGACGAGGGAGGGGAGTTGTG
GTTGAGGGAGGGTAGGCGTGCGAAAAAGGAGCAGGTGTACGGGAAGGGGG
TTCAGGATGTGGATTGGTGCGTTAGGACGCGGGTATTGTAGTATCATCAA
GGCAAAGCAACGGCATTGGCGTTATCTCCCCTCCCGGCCCCTCCGTCAGA
CCCCGCTGCGTGCCAGCAATTTTTCTTTACTGTATACACATCTTGCCCGT
GGCCCCACCCGGATCACTCCCTGGCCGCCTCCCTGCTTCCTACTCCCTAC
CCTCCTTTCCCCCCTCCTCCCCCTCCTCCCGCGCCACCTGGAAGTCCGAA
GGTGTCAGCGCCGCCGT

protein sequence of rna3080

>rna3080-protein ID=rna3080-protein|Name=rna3080|organism=Nannochloropsis gaditana|type=polypeptide|length=580bp
MGPSTPQGVPGDGNHSATGSNDSADTGSSVSVRDNPSRKSAASLLSGGST
GGSCIDSLGGPKIKTFVGRLLKTKCMDALLEQVANSELHRTLGAFDLTLL
GVGEIVGTGIFVLTGTAAANHAGPAVVLSFVIAGIASMFAALCYSELASI
IPVAGSAYTYSYATLGSFVGWTIGWDLCLEYLVGAATVSVGWSAYLRSFL
ASVGYDMPTKWSRSPVGWDVHREAFYVTGDYVDLPAMAIALVMTGLLVFG
IKESARINAVIVAIKLSVIVIFICAMGPHVDRSNWEPFVPPNEGTFGRYG
ISGIFQGASVVFFSYIGFDSVSCCAQECKKPERDLPIGTLSSLAICTTLY
ILVALIATGLLPYYEFKGIAHPISYAVEGIEGYEWLEMVINIGAIAGLTS
VILVSLMSQPRIFYAMAVDGFVPAFAAKVHPRYKTPWVTTIITGALCALC
AGILPIEVLSELTSVGTLFAFVLVCIGVSVLRYRRPNLERKFQVPFGPWL
IPGLGASISFLLICTSSTHTIYRLMVWMAIGWIIYFVWGLENSQKVMERT
ILPNREHDDGNTLNEGRGAETGVAMVTTDS

mRNA from alignment at CM002460.1:663755..666115-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3080 ID=rna3080|Name=rna3080|organism=Nannochloropsis gaditana|type=mRNA|length=2361bp|location=Sequence derived from alignment at CM002460.1:663755..666115- (Nannochloropsis gaditana)
GCTCTGGGATGGAGAGTTGCCCTACGATGCTTTACGTTTTGTTTCAAACG
CGGAGTGGGACACGTTTTTACTGATTTTTAATGGAATGGAGGCGCCGTTT
TGCATCTTGACTCTCTCAACTGTTTCATATGCGTGTCTTTGGCTGGGTCG
CGTGCCTGCACGCGAGCGAAATTAATTTTCCGAGATCGGTGACGCCCTCT
CTGAGATCCTAAGGATTTTTCAGTCATGAAAAGTTCAGAAGATAAATTAA
AGCTGCGAACAGCACCTTAGCTCACACGGACGCCATACTATCTCCACAAT
CAGGAGGCCGGACGAGGGGAGAGGTATCTACACGACAGAAACCCCTGCTC
CCACACATCGTTTTTCCAGGCCTCATGGGGCCGTCGACACCGCAAGGTGT
ACCTGGTGATGGCAACCATAGTGCAACAGGAAGCAATGACAGCGCTGACA
CTGGAAGCAGCGTTAGTGTAAGGGACAACCCATCACGAAAAAGCGCTGCC
TCTCTTCTATCAGGCGGGAGCACGGGGGGTAGCTGCATCGATAGCTTGGG
TGGCCCCAAAATCAAAACTTTCGTCGGCCGGTTGCTGAAAACGAAATGCA
TGGATGCCTTGTTGGAGCAAGTGGCCAACTCGGAATTACATCGGACGCTG
GGAGCTTTCGATTTGACTTTACTCGGCGTCGGAGAAATAGTGGGTACGGG
CATCTTCGTCCTGACCGGGACGGCGGCCGCAAACCACGCGGGCCCTGCCG
TGGTTCTATCCTTTGTCATCGCAGGCATTGCCTCCATGTTCGCGGCTCTG
TGCTACAGCGAACTGGCCTCGATCATTCCCGTGGCGGGCTCTGCCTACAC
GTATTCGTACGCGACGCTGGGCTCCTTTGTAGGCTGGACTATTGGGTGGG
ACCTGTGCCTGGAGTACCTGGTAGGGGCCGCGACTGTCAGTGTGGGGTGG
TCTGCATACCTCCGTAGCTTTCTGGCCTCGGTCGGATACGACATGCCCAC
GAAATGGAGCCGGAGTCCAGTGGGCTGGGACGTGCACCGGGAAGCCTTCT
ATGTGACCGGCGACTACGTGGACCTGCCAGCTATGGCCATCGCGCTCGTG
ATGACGGGGCTGCTCGTCTTCGGGATCAAGGAGAGCGCGCGGATCAACGC
TGTCATCGTCGCGATCAAGCTCTCGGTGATTGTTATTTTCATTTGCGCCA
TGGGCCCGCACGTGGACCGGTCGAACTGGGAGCCCTTCGTCCCGCCCAAC
GAGGGCACTTTCGGGCGCTACGGCATCAGCGGTATCTTCCAAGGGGCTTC
CGTTGTCTTTTTCTCCTACATCGGCTTCGATAGCGTCAGCTGCTGCGCGC
AGGAGTGCAAGAAGCCCGAGCGCGACCTCCCTATTGGCACCCTTTCTTCG
CTGGCGATCTGCACCACGCTCTACATCCTGGTCGCGCTCATTGCCACCGG
CCTTCTCCCCTACTACGAGTTCAAGGGCATCGCCCATCCCATATCCTATG
CCGTGGAGGGCATCGAGGGGTACGAGTGGTTGGAGATGGTCATCAACATT
GGCGCTATCGCCGGTCTCACCTCGGTCATCCTTGTCTCCCTCATGAGTCA
GCCCCGCATCTTCTACGCCATGGCCGTTGACGGCTTCGTGCCTGCGTTTG
CCGCCAAGGTCCACCCCAGATATAAGACACCCTGGGTCACCACCATCATC
ACTGGGGCCCTCTGTGCGCTGTGCGCAGGGATCTTGCCCATCGAAGTGTT
GAGCGAGTTGACCTCGGTCGGCACCCTTTTCGCTTTTGTTCTCGTCTGTA
TAGGTGTCTCCGTGCTGCGGTATCGGCGTCCGAATCTAGAGCGCAAGTTC
CAGGTACCTTTCGGACCGTGGTTGATTCCAGGTCTTGGCGCATCGATCAG
TTTTCTTCTAATTTGCACTTCAAGCACTCACACCATTTACCGGCTGATGG
TGTGGATGGCGATAGGATGGATCATATATTTCGTGTGGGGACTCGAGAAT
TCTCAAAAGGTGATGGAGCGCACAATTTTACCAAATCGCGAACATGACGA
TGGGAATACTTTAAACGAAGGGCGGGGGGCTGAGACGGGGGTGGCGATGG
TAACGACCGACTCGTAGAGCAGAGAGCGACAGGAGACTCAAGTATAAGGC
ACAAAGTACGGTAAAGGTCATCTTAAGCGATAAGATGAGAGGATAACAGG
TGACAGAAACTGATAATCATTACAAGTGTGTAGAGCATATGATGGTACAT
AACTCAGAGGCACCTACTGCCTGTGCTTGCCTATAGGCAACTATAACGTA
ACTTCATTTACAGGGGAGCAACGACTTAAAAGCACTATGACAACATGCAA
ATAAGATAGCC

Coding sequence (CDS) from alignment at CM002460.1:663755..666115-

>rna3080 ID=rna3080|Name=rna3080|organism=Nannochloropsis gaditana|type=CDS|length=1743bp|location=Sequence derived from alignment at CM002460.1:663755..666115- (Nannochloropsis gaditana)
ATGGGGCCGTCGACACCGCAAGGTGTACCTGGTGATGGCAACCATAGTGC
AACAGGAAGCAATGACAGCGCTGACACTGGAAGCAGCGTTAGTGTAAGGG
ACAACCCATCACGAAAAAGCGCTGCCTCTCTTCTATCAGGCGGGAGCACG
GGGGGTAGCTGCATCGATAGCTTGGGTGGCCCCAAAATCAAAACTTTCGT
CGGCCGGTTGCTGAAAACGAAATGCATGGATGCCTTGTTGGAGCAAGTGG
CCAACTCGGAATTACATCGGACGCTGGGAGCTTTCGATTTGACTTTACTC
GGCGTCGGAGAAATAGTGGGTACGGGCATCTTCGTCCTGACCGGGACGGC
GGCCGCAAACCACGCGGGCCCTGCCGTGGTTCTATCCTTTGTCATCGCAG
GCATTGCCTCCATGTTCGCGGCTCTGTGCTACAGCGAACTGGCCTCGATC
ATTCCCGTGGCGGGCTCTGCCTACACGTATTCGTACGCGACGCTGGGCTC
CTTTGTAGGCTGGACTATTGGGTGGGACCTGTGCCTGGAGTACCTGGTAG
GGGCCGCGACTGTCAGTGTGGGGTGGTCTGCATACCTCCGTAGCTTTCTG
GCCTCGGTCGGATACGACATGCCCACGAAATGGAGCCGGAGTCCAGTGGG
CTGGGACGTGCACCGGGAAGCCTTCTATGTGACCGGCGACTACGTGGACC
TGCCAGCTATGGCCATCGCGCTCGTGATGACGGGGCTGCTCGTCTTCGGG
ATCAAGGAGAGCGCGCGGATCAACGCTGTCATCGTCGCGATCAAGCTCTC
GGTGATTGTTATTTTCATTTGCGCCATGGGCCCGCACGTGGACCGGTCGA
ACTGGGAGCCCTTCGTCCCGCCCAACGAGGGCACTTTCGGGCGCTACGGC
ATCAGCGGTATCTTCCAAGGGGCTTCCGTTGTCTTTTTCTCCTACATCGG
CTTCGATAGCGTCAGCTGCTGCGCGCAGGAGTGCAAGAAGCCCGAGCGCG
ACCTCCCTATTGGCACCCTTTCTTCGCTGGCGATCTGCACCACGCTCTAC
ATCCTGGTCGCGCTCATTGCCACCGGCCTTCTCCCCTACTACGAGTTCAA
GGGCATCGCCCATCCCATATCCTATGCCGTGGAGGGCATCGAGGGGTACG
AGTGGTTGGAGATGGTCATCAACATTGGCGCTATCGCCGGTCTCACCTCG
GTCATCCTTGTCTCCCTCATGAGTCAGCCCCGCATCTTCTACGCCATGGC
CGTTGACGGCTTCGTGCCTGCGTTTGCCGCCAAGGTCCACCCCAGATATA
AGACACCCTGGGTCACCACCATCATCACTGGGGCCCTCTGTGCGCTGTGC
GCAGGGATCTTGCCCATCGAAGTGTTGAGCGAGTTGACCTCGGTCGGCAC
CCTTTTCGCTTTTGTTCTCGTCTGTATAGGTGTCTCCGTGCTGCGGTATC
GGCGTCCGAATCTAGAGCGCAAGTTCCAGGTACCTTTCGGACCGTGGTTG
ATTCCAGGTCTTGGCGCATCGATCAGTTTTCTTCTAATTTGCACTTCAAG
CACTCACACCATTTACCGGCTGATGGTGTGGATGGCGATAGGATGGATCA
TATATTTCGTGTGGGGACTCGAGAATTCTCAAAAGGTGATGGAGCGCACA
ATTTTACCAAATCGCGAACATGACGATGGGAATACTTTAAACGAAGGGCG
GGGGGCTGAGACGGGGGTGGCGATGGTAACGACCGACTCGTAG

Synonyms

Publications