rna3079, rna3079 (mRNA) Nannochloropsis gaditana

Overview
Namerna3079
Unique Namerna3079
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1517
Alignment locationCM002460.1:661665..663531 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100069g19.5333.mrna
Orig protein idgnl|cribi|Naga_100069g19.5333
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:661665..663531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100069g19gene2957Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27614.1cds3071Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3079rna3079-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3079 ID=rna3079|Name=rna3079|organism=Nannochloropsis gaditana|type=mRNA|length=1517bp
AGGTTAGCCCTATAGCCGGATATGGGTACATTTAGAGGCGAAAGCGCCTT
AGCCGCAGGATGCAGCAAGACGCAGGAGGGCAGAAGCACGACAAAGACCT
CGCGTCCCACCCATCCCCACAAAATTTCCAAAATCATGCTTCTTCTTCTG
ATACTCGCAGCTATGACATTGACCGCGACACATGCAAGGTCGGCGACAGA
GGTGGGAGGGAGTGGCGCGACACCCTCGAGCCCAACCACCTCTGGGAGGA
AACGTGCGTTGCTCAGCAGTAAGAAGAACGAACCCCAAGACGATGAAGCG
AAGCCCACCCCCACCCGCAAGTCCAAAATGAGCCGCATGGCAGGGTCCCC
GTCGGCGCGGAGGAAGCGAGCGCCGAGAGGCAAACAGGACTTTGCCACGC
TTTCTTCCTCTAGGTCCTCCACCGCGAGTTTAGAGGAAGACCCGGACGTG
ATCCCTTTCCTGGCCAGCACGCGCTTCAAGCGAGGGGAGGCGTTGACGTC
GCAGGGAGGCGGTGGTCTCCTCTTCACTCTGGCGAGACGCGCCGGAAAGG
CCTTAGTCGGGTCCTCTGCCTTCCGTTTCGTGGCGGAGGAGAAGATCTTT
GAGACTGTCGCAGGCATGCTCGCCTACCGCATTGCCTTTCAATGGAGCAA
GGACTCGACGGCCACGCGGAAAGCCCGCTTGCTCTTCACCCTCTATGTCT
GCCTGTATCTGGGCGCGCTCCTGTACTCGCGGCAGCAGGCCATCGCACAG
CAAGACGCGCGCACGCTCAAGGTAGCCGCGGTGCCCGCCGTTCTTTCCTC
CCTCCTGGATATGGCGAAGAAGATGAAGAAAGGGGAGAGCCCGGGGGGAT
TGCCGGGGCTGGCGGGCCTGGCGAGGCCGCAGGAGAAGGAGATGACCTTC
CGCGACTACGACTTGGGCCAGATCAAGGCAGCCTTGGACCGATTCTCGCT
CTTCTTGGTGGGGATGACCTTCCTGCACTTCAAGATGAAGAACACGTACA
TGATCATGTACTGGGGGTAGGTGGCGGCCTCCCTCCTCCTCGTCCTCTCT
CTCCCCATCGCTGGCTCTCTCTGTGCCCCTTTGCCCCGCCCATGTCTTTC
CCCCTCCTTTCTGCTCATTACCACATGCCCCCCTCCCCCTCCGGGTCTTG
GTTGTCAACACCCTGCCGCCCCCCCTTCCTCCCCCCCGCCCTCCAGCTTG
CTCGGGCCCCTCATGCTGGTCCGGGAGCCGCTGTTTCAAGTGCATGTCTT
CGGGATGGGGGAGACGGGCATCAGAGAGAGACCCTTCGGGCCCAAGGAGG
AGCCGGAGGCGGTGGAGGAGGGCGAGGGGGAGGAAGGAGGGGAGGAAGGG
GCGGAGGCCGCGAAGGAGGCGAGGAGGGAAGATGATGTCGGTGCAAGGGG
GCTGGAAGAGGCACAGGAGAAGGTTGAGGGGGAGGAAGAGGTGGAGGGGG
AGGGAGAGGTGGAGGAGGAGGAAGGGGAAGAAGAGGGCGAGGGAGACGAA
GTGGAGGGGGGAGAGGA
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protein sequence of rna3079

>rna3079-protein ID=rna3079-protein|Name=rna3079|organism=Nannochloropsis gaditana|type=polypeptide|length=507bp
MLVHRPCRYFQEVEAQLSFLDTPDRRLAVPAAPDTLVAPCKKASYTMPGD
FRCTGTPSISKRPGSRTSTWRLAVLGFFGIIGRPPVVAFYLPVPIPASPA
HRPASFLPLRPSARKISRHFTPPRQQEAEIEMQKKPLRPTSLPLALPGPS
SSQYDELMDNLSDDEKYNILLQSRASSLVQLLGKKGRGMGGNSRSTSEAF
TPLYKLVEEMTDKDMRITLKSFAALIDAASLSRDLNVIQECLLLARRNGV
SRAFARSVGTLNPPPPLRAASDRYDLSPVPSDARTSELAAGVAALTVVGG
ALSVEAVGPLLHADTTAASVVLGGAAVMGVWDLTQRKGQELTLALAGINR
LFLRDPERDAHVQAATFLSAYLLGLPCFCFSPNVMEAVRMTAQVPAFAET
LSSTAGLNRLLVYLLAPVAVEEANYAQLMASDARQARALLQVFMGRGEAR
GQEGREEEVLLPWAYEEAKRLLRSHSALLERLKQRMESGGATVGDCVALL
EGAVPSV
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mRNA from alignment at CM002460.1:661665..663531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3079 ID=rna3079|Name=rna3079|organism=Nannochloropsis gaditana|type=mRNA|length=1867bp|location=Sequence derived from alignment at CM002460.1:661665..663531- (Nannochloropsis gaditana)
ATGCTAGTTCACCGCCCTTGCCGGTATTTCCAGGAAGTCGAGGCACAGCT
TTCCTTCCTCGATACTCCCGACAGAAGGCTTGCTGTCCCAGCGGCACCAG
ATACACTTGTTGCCCCGTGCAAAAAGGCAAGCTACACAATGCCTGGGGAT
TTCCGATGTACCGGTACACCTTCCATATCGAAAAGACCAGGATCTCGTAC
TTCAACGTGGCGGCTCGCCGTGCTAGGTTTCTTTGGCATCATTGGTCGTC
CTCCAGTCGTGGCTTTCTACCTCCCCGTCCCCATCCCAGCCTCTCCCGCA
CACCGCCCTGCTAGCTTCCTTCCCTTACGCCCAAGCGCAAGAAAAATATC
GCGACATTTTACTCCACCAAGACAACAGGAGGCAGAGATCGAAATGCAGA
AGAAGCCGTTGCGTCCAACCTCCCTTCCTTTGGCTCTTCCCGGCCCATCA
TCCTCGCAATACGATGAATTGATGGATAATTTGTCAGATGATGAGAAATA
CAATATCCTACTTCAAAGTCGGGCATCGAGTCTGGTCCAGTTGCTGGGAA
AGAAAGGAAGAGGCATGGGAGGGAATTCCCGGTCGACATCGGAGGCGTTT
ACCCCCCTTTACAAGCTGGTGGAAGAGATGACGGACAAGGACATGCGCAT
CACGCTCAAAAGCTTCGCGGCCCTGATCGACGCTGCTTCGCTTTCTCGGG
ATTTGAATGTGATCCAGGAATGCCTGCTTCTGGCGCGTCGGAATGGAGTG
TCGCGCGCTTTTGCCCGGAGCGTCGGAACCCTAAACCCTCCTCCCCCCCT
CAGGGCAGCATCAGACAGGTACGACCTCTCACCCGTGCCCTCGGACGCCC
GCACCAGTGAATTGGCTGCAGGTGTAGCGGCCCTGACTGTCGTAGGGGGT
GCTTTATCAGTAGAGGCCGTCGGGCCTCTCCTCCACGCGGATACCACGGC
GGCCTCGGTGGTGTTGGGGGGAGCCGCCGTGATGGGAGTCTGGGACCTGA
CGCAGCGAAAAGGGCAAGAGCTGACGCTGGCTCTGGCCGGGATCAACCGG
CTCTTCCTTCGAGACCCGGAACGGGACGCCCACGTGCAAGCCGCGACCTT
TCTGAGCGCCTACCTCCTGGGGCTGCCCTGCTTCTGCTTCTCGCCCAACG
TGATGGAGGCGGTGAGGATGACTGCCCAGGTGCCGGCCTTCGCAGAGACC
CTCTCGTCCACGGCCGGGCTGAACAGACTCCTGGTGTACCTGCTCGCGCC
CGTGGCGGTGGAGGAGGCGAACTACGCCCAGTTGATGGCCTCGGACGCCC
GCCAGGCCAGGGCCTTACTCCAAGTTTTCATGGGGCGGGGGGAAGCGAGG
GGGCAGGAAGGGAGGGAGGAGGAGGTGCTCCTGCCATGGGCGTACGAAGA
AGCCAAACGTTTGTTGCGGAGTCACAGCGCCTTGCTAGAGCGATTGAAGC
AGCGGATGGAAAGCGGGGGAGCAACAGTCGGGGACTGTGTGGCGCTTCTG
GAGGGGGCGGTCCCCTCGGTCTGAGGAGGGGACGAGGGAGGGGAGTTGTG
GTTGAGGGAGGGTAGGCGTGCGAAAAAGGAGCAGGTGTACGGGAAGGGGG
TTCAGGATGTGGATTGGTGCGTTAGGACGCGGGTATTGTAGTATCATCAA
GGCAAAGCAACGGCATTGGCGTTATCTCCCCTCCCGGCCCCTCCGTCAGA
CCCCGCTGCGTGCCAGCAATTTTTCTTTACTGTATACACATCTTGCCCGT
GGCCCCACCCGGATCACTCCCTGGCCGCCTCCCTGCTTCCTACTCCCTAC
CCTCCTTTCCCCCCTCCTCCCCCTCCTCCCGCGCCACCTGGAAGTCCGAA
GGTGTCAGCGCCGCCGT
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Coding sequence (CDS) from alignment at CM002460.1:661665..663531-

>rna3079 ID=rna3079|Name=rna3079|organism=Nannochloropsis gaditana|type=CDS|length=1524bp|location=Sequence derived from alignment at CM002460.1:661665..663531- (Nannochloropsis gaditana)
ATGCTAGTTCACCGCCCTTGCCGGTATTTCCAGGAAGTCGAGGCACAGCT
TTCCTTCCTCGATACTCCCGACAGAAGGCTTGCTGTCCCAGCGGCACCAG
ATACACTTGTTGCCCCGTGCAAAAAGGCAAGCTACACAATGCCTGGGGAT
TTCCGATGTACCGGTACACCTTCCATATCGAAAAGACCAGGATCTCGTAC
TTCAACGTGGCGGCTCGCCGTGCTAGGTTTCTTTGGCATCATTGGTCGTC
CTCCAGTCGTGGCTTTCTACCTCCCCGTCCCCATCCCAGCCTCTCCCGCA
CACCGCCCTGCTAGCTTCCTTCCCTTACGCCCAAGCGCAAGAAAAATATC
GCGACATTTTACTCCACCAAGACAACAGGAGGCAGAGATCGAAATGCAGA
AGAAGCCGTTGCGTCCAACCTCCCTTCCTTTGGCTCTTCCCGGCCCATCA
TCCTCGCAATACGATGAATTGATGGATAATTTGTCAGATGATGAGAAATA
CAATATCCTACTTCAAAGTCGGGCATCGAGTCTGGTCCAGTTGCTGGGAA
AGAAAGGAAGAGGCATGGGAGGGAATTCCCGGTCGACATCGGAGGCGTTT
ACCCCCCTTTACAAGCTGGTGGAAGAGATGACGGACAAGGACATGCGCAT
CACGCTCAAAAGCTTCGCGGCCCTGATCGACGCTGCTTCGCTTTCTCGGG
ATTTGAATGTGATCCAGGAATGCCTGCTTCTGGCGCGTCGGAATGGAGTG
TCGCGCGCTTTTGCCCGGAGCGTCGGAACCCTAAACCCTCCTCCCCCCCT
CAGGGCAGCATCAGACAGGTACGACCTCTCACCCGTGCCCTCGGACGCCC
GCACCAGTGAATTGGCTGCAGGTGTAGCGGCCCTGACTGTCGTAGGGGGT
GCTTTATCAGTAGAGGCCGTCGGGCCTCTCCTCCACGCGGATACCACGGC
GGCCTCGGTGGTGTTGGGGGGAGCCGCCGTGATGGGAGTCTGGGACCTGA
CGCAGCGAAAAGGGCAAGAGCTGACGCTGGCTCTGGCCGGGATCAACCGG
CTCTTCCTTCGAGACCCGGAACGGGACGCCCACGTGCAAGCCGCGACCTT
TCTGAGCGCCTACCTCCTGGGGCTGCCCTGCTTCTGCTTCTCGCCCAACG
TGATGGAGGCGGTGAGGATGACTGCCCAGGTGCCGGCCTTCGCAGAGACC
CTCTCGTCCACGGCCGGGCTGAACAGACTCCTGGTGTACCTGCTCGCGCC
CGTGGCGGTGGAGGAGGCGAACTACGCCCAGTTGATGGCCTCGGACGCCC
GCCAGGCCAGGGCCTTACTCCAAGTTTTCATGGGGCGGGGGGAAGCGAGG
GGGCAGGAAGGGAGGGAGGAGGAGGTGCTCCTGCCATGGGCGTACGAAGA
AGCCAAACGTTTGTTGCGGAGTCACAGCGCCTTGCTAGAGCGATTGAAGC
AGCGGATGGAAAGCGGGGGAGCAACAGTCGGGGACTGTGTGGCGCTTCTG
GAGGGGGCGGTCCCCTCGGTCTGA
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Synonyms
Publications