rna3073, rna3073 (mRNA) Nannochloropsis gaditana

Overview
Namerna3073
Unique Namerna3073
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length390
Alignment locationCM002460.1:650218..651819 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100069g14.5335.mrna
Orig protein idgnl|cribi|Naga_100069g14.5335
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:650218..651819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100069g14gene2951Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27616.1cds3065Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3073rna3073-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3073 ID=rna3073|Name=rna3073|organism=Nannochloropsis gaditana|type=mRNA|length=390bp
ATGCGGTTTTCAAAAGGCAACCATGGAATGTATCATGAGCAACAAGTCTA
CCGAATGGATGGCTTCGTTCAGCGAAACCGTCGTTTGCCTCAAGTTGAAT
GTTCACGCGCCCAAGCTGTAGTCGTGCGGACCCCAAAAACCAACCAATTT
CGGCTTTTTGATGGAGCAGACACACATACCACGTCTGACTTGAACTTTGT
ACGTGACAAGCAGAGCGGTGGGCAGGATTGCGGTTTCGCATGGACAGCTT
CGGTCGCGCCCACAGGGGGGGGAGAGAAAGCCGCTGTCCATGATCCCTCC
AACCTCCCCTCTCCCCTCGTTCCACTCGCGTGCGCTGGACTACCGGGCAT
CAGGCTGGTCCTACATGCCATAATGAGGGCATATCTTTGA
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protein sequence of rna3073

>rna3073-protein ID=rna3073-protein|Name=rna3073|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MLRSAACLGTLVVVCIIGLVIGFRPSYNSPSQSSRPVTLKSCVRDFHSRT
FSSRGQRSRLFQGPPGRPTRENEPDEYFKSNLEKKELSERLVDPQVLIAV
VSILAPFVAVGVLLGGGFLTQ
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mRNA from alignment at CM002460.1:650218..651819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3073 ID=rna3073|Name=rna3073|organism=Nannochloropsis gaditana|type=mRNA|length=1602bp|location=Sequence derived from alignment at CM002460.1:650218..651819- (Nannochloropsis gaditana)
ACCCCTTGCGTGTCAAATTATTTCTTGTGTCACTCGCCTTGAGACCGTGT
CACCCGTCAGAGATGGTCATGTAGCTGAGTGGCCATGAAGTTAAAGATGA
CTGGATGCAATTAGACGCTACTTTATGACTAAAGTGGCGTCAACCTCTCT
TCCACCTGGCGCACTCCGACCTATGTCCGATCTTAGGCGTTCACCCAGTA
AATGGTTACGCTACGAAAAATATGTGAGGCACCCAATTCGAACGCATTGA
GCAACTGACGATACTCCTTTTTAATCCACGTATTACGCAGGTCCTCTCGT
TCTTACCCAGAAACAACATGTTGCGCTCTGCAGCCTGCCTAGGTACCCTT
GTGGTCGTTTGCATCATCGGCCTCGTCATCGGGTTCAGACCATCCTACAA
TTCACCCTCTCAGAGTAGCAGGCCTGTCACACTAAAAAGTTGCGTGCGGG
ACTTCCATTCACGCACGTTTTCCAGCCGCGGTCAGAGAAGCAGACTTTTC
CAAGGTCCGCCCGGCAGACCTACCCGCGAGAACGAGCCTGACGAGTACTT
CAAGTCGAACTTGGAGAAGAAAGAGCTGTCAGAGCGACTTGTGGACCCCC
AAGTTTTGATCGCTGTGGTTAGCATCCTTGCCCCATTTGTGGCAGTAGGG
GTTCTGCTGGGCGGCGGCTTCCTGACGCAGTAGACGGGATCACACGAATT
TGGCAGCAATACACATCACAAAATCGACGTAACTAGTCTCCTCGTCCCTC
ACCACGTCTTGCAGGTGTCATTAAAGAATAATCGACGCCATGGAAGGCAT
TGTTAACTTCGTATGGGATTTCGCCAGTAAATGCCAACATGTGCGTCAAG
TACAACCTAATGAAGGGGAATCACGCCAGCGAGATCGAAAAGGCTTTGTC
TCATCGACATAATTTAAAGAAGGCGACACATGGATATGTGCCGTCCGATG
ACAAAGATGGAAGATGAAAGAATGCGGAGAGATCGTGTCTGGCATCGGTG
AGGCTCTTGATTTTTTCCCTTGTTGCTCGGGTTTAGCGGCGGTTTTTACA
CTCTCATCCATGATCAAATACTATTTACCGCTGCCACCTTATGGTTTCAA
CCTGCCTTTCCTCCCTCGAACTTGTGTCGGAAAACTCCGGCACCAGGTGC
TCTCTTCCATCTTCTCGTGGGTAGGGAAGGGAGGAGGAGGGGGCAGCCAC
TTGTCCTTTCGACATCCGGACTTCACTCACCTCCCCAAAGCATGTGGTCT
CTAGCCACCCTACTTCGTCTCATGTGGTGAAGTTGGGTGAACCGAACTTG
GGCTCTAAAGCATCGGTGTGCATGGCGGATGACCGACGCGTGTCCCTCGG
TCCATGTCCTGGTATCCTTTCTTGTGTCACCGCGACTCTGTGCCGCGCCT
TTCTGTCTTGGTCTCTCCCGCAGTCCTTTTTCGGGACTCCCCAAGCCAGT
ATGCAATTTTGTGGGGAGGTTTCACCTTGTCTGTACAAACAACATACAAA
GGAAACAAAGTCGTGCGCACGGATGCATGATGAGATCGATTTACTCCATG
CATTGGGCGGAAAAATACCCTGATCGTTCTTGGTCACAACTATGATAAAT
AG
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Coding sequence (CDS) from alignment at CM002460.1:650218..651819-

>rna3073 ID=rna3073|Name=rna3073|organism=Nannochloropsis gaditana|type=CDS|length=366bp|location=Sequence derived from alignment at CM002460.1:650218..651819- (Nannochloropsis gaditana)
ATGTTGCGCTCTGCAGCCTGCCTAGGTACCCTTGTGGTCGTTTGCATCAT
CGGCCTCGTCATCGGGTTCAGACCATCCTACAATTCACCCTCTCAGAGTA
GCAGGCCTGTCACACTAAAAAGTTGCGTGCGGGACTTCCATTCACGCACG
TTTTCCAGCCGCGGTCAGAGAAGCAGACTTTTCCAAGGTCCGCCCGGCAG
ACCTACCCGCGAGAACGAGCCTGACGAGTACTTCAAGTCGAACTTGGAGA
AGAAAGAGCTGTCAGAGCGACTTGTGGACCCCCAAGTTTTGATCGCTGTG
GTTAGCATCCTTGCCCCATTTGTGGCAGTAGGGGTTCTGCTGGGCGGCGG
CTTCCTGACGCAGTAG
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Synonyms
Publications