rna307, rna307 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna307
Unique Name	rna307
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2588
Alignment location	CM002455.1:759947..762312 -

Link to JBrowse

Properties


Property Name	Value
Product	putative mitochondrial-processing peptidase subunit beta
Orig transcript id	gnl\|cribi\|Naga_100026g8.10624.mrna
Orig protein id	gnl\|cribi\|Naga_100026g8.10624
Gene	MPP
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:759947..762312 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MPP	gene296	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30370.1	cds307	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna307	rna307-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:759947..762312-
coding sequence from alignment at CM002455.1:759947..762312-

mRNA sequence

>rna307 ID=rna307|Name=rna307|organism=Nannochloropsis gaditana|type=mRNA|length=2588bp
CGCCCTTTAAGCGCATGCTATGGTTCTCAATGTAGCCCATACATGCTTTG
CCCACAATCTCTTCCTGGGAACGAGGTTGGGATAAAAGCATTTTCCCTAC
TTGCGAGGGCATCGGGCCCTGCGCCGGCGGCGGCGGAAGAAGGCGATTAT
ATTGCTCTATCGCGCTTACAGGACATGCCTGACGCAATTGTGGTACCACG
TCCTTGACCCACGAGTGGTGACTTTTCCATGAATTGTAACGAACAGGTTG
ACTGCGCCGGTCTTCATTCGTATTCCAATGCAGCACGGACCAGGTCTGGA
CGTCGTGGATAGATCCAGGAGATCCAGCCGCCTCGTAGCAGTTTGTCTGC
ACAAATGCACAAACCCACTACCGCTGGAACACCGCCTGTCCTAGTACCGC
CTACCAAGGCGAATGTGTTAGCGGCGGGCGGTCCGAGTGGTAACACAAGC
ATCAATGCAACCTCCTCTGTGCCGCCGCCTGCTGTGTATACGATTCCTCC
GTCCCCGGCTGCGCAGAGCTCCGCTTCCTCCCTTCCCTCAGATGCCTCTC
CTAGGAAGCAACACCCGCATCTGCAGGCACAGTACCACACGCAACTCTCA
CACCAGCAGCAACAGCAGCAACAGCAGCAACATCACGCACTGCATCACCA
CCAACAAGGCTATCAAGGGAGCGGAACCCGAGGGTTCGTGGACTTGCTGC
GCTCGTTGGGCCACTTGACGCTCAACAACGCGTCTGAGATCCGGGAGGAG
CTACGGCATTTGCGCCGGCGCCGTGGCAAGCAAGAGGAGGCTGTGATGTT
GTCCGAACTGGCGGCGCTGGCGTCTTGCCTGAACGAGTTGGTCATGTCCA
TGGTGACAAGTAGCAGCAGCAACAGCAGTGGGCCCGGTGGCAGTGGCTCG
GGTTCTACGGAAGAGGGTGGAGGAGAAGGTGACAGCAGCAGCAAAGCCGG
GGGCGGGGCGGTGGCTGTGGAGCCCTCTCGACGGGCGCTGGCAGGCCTCT
TCTCCTACGAGGGTCTTATGCCCCCCATCCCTCACCCGGCGGTGCCCGCC
CCCTCCACCGCCCTCGGCGACGCGGCCTTGCTGCACTATTGCTTCGACTT
TCTGGTCGAGGGTCGGCTCCAGTATCGAAAACAGCTGGGAGACCTGGCTC
TGGTCTGTCGGCAGTGGCGGGACCTGGCGCAGGCCGACAGGTTTTGGAAG
CCCGTCGTCCTGCAGCTCTTCCCCCGCCTCTCCCCCGCCCTGGCGGACCA
CGACGAGGAGGACGGGGCCTCGGGGCCGGATCCAGACGCGGCGGCGCTTA
CGGAGGCCGCGGTGGACGGGGCGGGGGCGGGGGCAAGTTCCGAGCCGTCC
ACTTCTCCGGGCGGGCGGGCAGGCTGGCACCGGAAGTACTTGATCCAGTT
CGGTCGCTGCTTGTTCGACCGGCCCATCCGCCAAGGGCCCTGGCACGAGG
GTATCACTCTCTCCTTCGACCTACACGACGAGCAGGACGGCACCCGCCTC
TTCTCCTCGACAGGGCCCATCCGCTTCACGGGCACCACCATCCCGGGCAT
CACGGCCATGAAGCTGACAGGCCGCCGCCGCCGGGTCACGGCCCCCTTCT
CCGCCGCATCCCGGGACCGCGGCCTCGGGAACCTTTCCTCCATCGAGGAG
CTTTTCCAGGAGGGCGACTCCCGCGACTACCCCGTGTCCTTCACCATCCG
GGTCACCGCCCGCGACGAGCGCACGGGCAAGATGGCTCTTCTTTTCTCCT
CGGCCAAGCGGACGAAGCGGTGGGTGGAGCCGCTGGGCGAGGACATGGGC
GTTCCGCAGGGCACGCTCCTTGTCAACCAGGGGTGGTCGCGCGTCACGAT
CCCGTCCACGGACCTGGCCATGCAGATGCTGACGGTATTCTACGTGGCGC
CCGTGGAGGGACAGCCGGAGACCATTAGCGCGGCGGAACGGCTGTACTCG
GTGCTGACGCTGGACTGCGCCTTTATGCTCCAGTGCAAGACAGAGGATCA
AGAGCAGATCGGACGCTTCATCCTGGCCGCCTTGGAGAATGGGCCGGGCG
TGGAACGGGATGGCTGACGGGCTAGGTCGGAAAGTGGTGGATGGAGGGAG
GGAGAGGAAGCAACGGTGATATCCTGAATGCCCGGTCAAACTTGAATCAG
AGGGCTGTTTGATGCGGAAGAATGGTGTGAAAGGAGGATAGAGGGGTTTT
CCACCTCAGGAAAGCCTGAGTGGGGGAAACCCTCTCGCTATTTCTATGTG
GATAGAGCGATTGAGAGAAGATAGGTGAGAATCCGAGTGGACAGGGTGGG
TGTCACCATAGAGCGGGAGGGGAAAAGTCTCAATCGCGGCCGTCGTGCAA
GTCTCCTTTACCAACATGTGGAGTGGCACCTTCCGTGGGGCGTAAGGAGG
GCGTGGCAAGGGTGTATTGCCATGACAAGCCGACGCGAAGGGGAAGTAAG
GACGTCGACAGCCACGCTTGGCCAGTGTTTGATCAACGAGTTTTCTTCTT
TTGCCGCACTGATATTTCCCATGTCTACAAGCACTGCCGCCGAATCCAGT
CGTAGTCGGGGAGGTTTGCCACGGGGCCGATGGCCGCC

protein sequence of rna307

>rna307-protein ID=rna307-protein|Name=rna307|organism=Nannochloropsis gaditana|type=polypeptide|length=381bp
MAFKGTQRRAQYDIEVEIENMGGHLNAYTSREQTVYYAKVFRGDVERAMD
ILSDILQHSVFDERAVMRERDVILREMEEVNKQKEEVILDYLHETAFQGT
GLGRTILGPEENVKSLHREALKDYIRTHYTAPRMVIAGAGAIEHGRLVEL
ADKYFGNLPRQAPPGADTGMEAAVFVGSDKRVHSEEESEAHVALAFRGAA
WTSEFAFPLMVLQTIMGCWDRSSGASRQMTGRLGQAVMERELCHSYVTFN
TCYKDMGLFGLYAVVPPEKLRDFSGAMTEHLVRMAHDVTPAEVEKAKTQL
KCTLLMQLDSFAHVCEDIGRQMLTYGRRMTPAEIFARIDAVQAEDVKATA
MAYIVDEDHALAAIGPVANLPDYDWIRRQCL

mRNA from alignment at CM002455.1:759947..762312-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna307 ID=rna307|Name=rna307|organism=Nannochloropsis gaditana|type=mRNA|length=2366bp|location=Sequence derived from alignment at CM002455.1:759947..762312- (Nannochloropsis gaditana)
GGGCCGTCACCCGAGGGGTTGCTTTCCATCACACGCTGCGCCCCCAAGTT
CGTAGTTAGGTGCCCCATCTCATGCCGTCCCGTCGCACTCTCACCTGCAG
CACACGCCCCCACGCACAGGGAGACGTCCTGCGCTACTGAGTAAATGAAG
TGCAGTAAGAATGTCCTCCAGATGCTCTCGCGTCGGCGGAGTGCAGCGTC
ATCATCCCTCGTCTTGCCGGGACCCGGCATCAAGGTATGCGAAGTATCTA
TCTATCTACCGAGGCCATCAAGTAATTTTCACGACGAAATGATATGTTCC
TTTTCGCACACTCGTATCTAGGGTGAAAGGTTCTTATCGGCATACAAAGG
GAGGAGCTTGGAGGTGAATACTCCCGCGACGGAGGTGACAAAGCTATCAA
GCGGATTGCGCGTTGCATCAGAGGTAATATGCGAACTCGGAAACAGTGTC
ATGAAAATTTCTTTGTCAGTCGTACAGACTCAAACATGGAACAATGTATC
GATTTCTTTTTTAACACGGAAATTTAATCCGGAACAACCAACAAATGCAG
ACCTCGCATGGTGAGACAGCAACAGTGGGTGTTTGGATAGACGCGGGAAG
CCGGTATGAGACTGCGCTGAATAATGGCGCCGCACATTTCTTGGAACACA
TGGCATTCAAGGGCACACAACGACGTGCTCAGTATGACATAGAGGTTGAG
ATAGAAAACATGGGGGGACACTTGAATGCGTACACTTCGCGGGAACAAAC
AGTCTACTATGCCAAGGTATTCCGAGGAGATGTGGAGCGCGCCATGGACA
TCCTCAGTGACATTTTGCAGCACTCGGTGTTTGACGAACGTGCCGTGATG
CGGGAGCGCGACGTAATCCTCCGAGAGATGGAGGAAGTGAACAAGCAGAA
AGAGGAGGTCATCCTGGACTACTTGCACGAGACGGCTTTTCAAGGCACTG
GCCTTGGGCGGACGATTCTGGGGCCGGAGGAGAACGTGAAAAGCCTGCAC
AGAGAGGCATTGAAAGACTACATCCGCACACACTACACGGCTCCGCGAAT
GGTGATAGCGGGGGCGGGGGCCATCGAGCACGGCCGGCTGGTGGAGCTGG
CGGATAAATACTTCGGAAACTTGCCGCGCCAGGCGCCCCCCGGAGCAGAT
ACGGGAATGGAGGCGGCGGTTTTTGTCGGCAGTGACAAGCGAGTGCACTC
GGAGGAAGAGAGCGAGGCGCATGTGGCACTGGCCTTCAGAGGCGCAGCCT
GGACGTCGGAATTCGCGTTTCCGCTCATGGTGCTGCAGACCATTATGGGG
TGCTGGGACCGGTCGAGTGGGGCGAGCCGGCAGATGACCGGGCGGCTAGG
GCAGGCTGTGATGGAGAGAGAGCTCTGTCATTCCTACGTGACCTTCAACA
CGTGCTACAAGGACATGGGCCTGTTCGGGCTCTATGCCGTGGTGCCGCCG
GAGAAGCTCAGGGACTTCTCGGGGGCGATGACGGAGCACCTTGTACGGAT
GGCGCACGACGTCACTCCCGCGGAGGTGGAGAAGGCCAAGACGCAGCTCA
AGTGCACACTGCTGATGCAGCTTGACTCCTTTGCACACGTGTGCGAGGAC
ATCGGCCGGCAGATGCTGACCTACGGGCGGCGAATGACGCCCGCCGAGAT
CTTCGCCCGCATCGACGCCGTCCAGGCGGAGGATGTTAAGGCCACGGCCA
TGGCTTACATCGTGGACGAGGACCACGCCCTGGCGGCCATCGGCCCCGTG
GCAAACCTCCCCGACTACGACTGGATTCGGCGGCAGTGCTTGTAGACATG
GGAAATATCAGTGCGGCAAAAGAAGAAAACTCGTTGATCAAACACTGGCC
AAGCGTGGCTGTCGACGTCCTTACTTCCCCTTCGCGTCGGCTTGTCATGG
CAATACACCCTTGCCACGCCCTCCTTACGCCCCACGGAAGGTGCCACTCC
ACATGTTGGTAAAGGAGACTTGCACGACGGCCGCGATTGAGACTTTTCCC
CTCCCGCTCTATGGTGACACCCACCCTGTCCACTCGGATTCTCACCTATC
TTCTCTCAATCGCTCTATCCACATAGAAATAGCGAGAGGGTTTCCCCCAC
TCAGGCTTTCCTGAGGTGGAAAACCCCTCTATCCTCCTTTCACACCATTC
TTCCGCATCAAACAGCCCTCTGATTCAAGTTTGACCGGGCATTCAGGATA
TCACCGTTGCTTCCTCTCCCTCCCTCCATCCACCACTTTCCGACCTAGCC
CGTCAGCCATCCCGTTCCACGCCCGGCCCATTCTCCAAGGCGGCCAGGAT
GAAGCGTCCGATCTGCTCTTGATCCTGCCGTGCAAGATGAGAGAAAGAAG
AAAAGAAAAATGAGCC

Coding sequence (CDS) from alignment at CM002455.1:759947..762312-

>rna307 ID=rna307|Name=rna307|organism=Nannochloropsis gaditana|type=CDS|length=1146bp|location=Sequence derived from alignment at CM002455.1:759947..762312- (Nannochloropsis gaditana)
ATGGCATTCAAGGGCACACAACGACGTGCTCAGTATGACATAGAGGTTGA
GATAGAAAACATGGGGGGACACTTGAATGCGTACACTTCGCGGGAACAAA
CAGTCTACTATGCCAAGGTATTCCGAGGAGATGTGGAGCGCGCCATGGAC
ATCCTCAGTGACATTTTGCAGCACTCGGTGTTTGACGAACGTGCCGTGAT
GCGGGAGCGCGACGTAATCCTCCGAGAGATGGAGGAAGTGAACAAGCAGA
AAGAGGAGGTCATCCTGGACTACTTGCACGAGACGGCTTTTCAAGGCACT
GGCCTTGGGCGGACGATTCTGGGGCCGGAGGAGAACGTGAAAAGCCTGCA
CAGAGAGGCATTGAAAGACTACATCCGCACACACTACACGGCTCCGCGAA
TGGTGATAGCGGGGGCGGGGGCCATCGAGCACGGCCGGCTGGTGGAGCTG
GCGGATAAATACTTCGGAAACTTGCCGCGCCAGGCGCCCCCCGGAGCAGA
TACGGGAATGGAGGCGGCGGTTTTTGTCGGCAGTGACAAGCGAGTGCACT
CGGAGGAAGAGAGCGAGGCGCATGTGGCACTGGCCTTCAGAGGCGCAGCC
TGGACGTCGGAATTCGCGTTTCCGCTCATGGTGCTGCAGACCATTATGGG
GTGCTGGGACCGGTCGAGTGGGGCGAGCCGGCAGATGACCGGGCGGCTAG
GGCAGGCTGTGATGGAGAGAGAGCTCTGTCATTCCTACGTGACCTTCAAC
ACGTGCTACAAGGACATGGGCCTGTTCGGGCTCTATGCCGTGGTGCCGCC
GGAGAAGCTCAGGGACTTCTCGGGGGCGATGACGGAGCACCTTGTACGGA
TGGCGCACGACGTCACTCCCGCGGAGGTGGAGAAGGCCAAGACGCAGCTC
AAGTGCACACTGCTGATGCAGCTTGACTCCTTTGCACACGTGTGCGAGGA
CATCGGCCGGCAGATGCTGACCTACGGGCGGCGAATGACGCCCGCCGAGA
TCTTCGCCCGCATCGACGCCGTCCAGGCGGAGGATGTTAAGGCCACGGCC
ATGGCTTACATCGTGGACGAGGACCACGCCCTGGCGGCCATCGGCCCCGT
GGCAAACCTCCCCGACTACGACTGGATTCGGCGGCAGTGCTTGTAG

Synonyms

Publications