rna3061, rna3061 (mRNA) Nannochloropsis gaditana

Overview
Namerna3061
Unique Namerna3061
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2188
Alignment locationCM002460.1:597925..599058 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100256g1.1478.mrna
Orig protein idgnl|cribi|Naga_100256g1.1478
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:597925..599058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100256g1gene2939Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27626.1cds3053Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3061rna3061-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3061 ID=rna3061|Name=rna3061|organism=Nannochloropsis gaditana|type=mRNA|length=2188bp
TGGTTGCATGTCCAGTCCCATAGCAAGTCGATCGAAACCATGTACGTGCC
GGTACTCCGCACCTTAGGGAGCGAACATGCGAAGACCTGATGGCTGCATC
GACGTCACTTTGATGTGGGGGATAAGTTTCGTGGCGATGTAAAGGAGGGA
GAGGCTAGGGGAGGAATTAGCTCTGAGAGCGCTTGCGATAAAATTCCTTA
GCAGACTGCAAGAGCGTGCCTCCGGGAAAGTAATTTGCGCGACTATCCGG
ATTCATCTTATCATGCGTACAAATGCACATTGATAATTCCATGTACAAAT
AACAAGGCGAGGAAGGTGTGGCCTCTGCGGCGGCAAAAATGCTAAATGAA
GCCTTGATCGAGACGACCCCTCAGCGTGGGCGGGATGTCAAGCCGAATAA
GCCACCTTCTCAAGACTCGAAGGGCCTGCTTCAAGACAGACATACAGGGC
AGGCAAAAAGAACAAATGACCTTTGCGCATACAGTCAGGACGAGTTGGCG
GCAGAGGAAGAGTATACGCAGATATGGGAAGGCACAGTTCCTCCCTATGG
CCTTCAATTACCCCGCTCGACGTCTGTTCCGTACATGCTGGTCAAGGTGG
ATACGGGCATGAACGGGCTAGAGAGTGGCTCAGGATTGAAGAAGTCCATG
GATCTGAAACGTGCCATAGACACGCCGCCTCCACACACTTTACAAGGGGT
CACGCGGACAGCAATCGCCTTCACGCGCTCCATGATCGGCACGGCCGCAC
TCTACATGCCGCGCATGTTCTATACGGGAGGACTCGCCTTTTCGACGGCC
ACCCTGATTGGGGCATGTTTTATCAGCACCTATTCCATCATTCTCTTGTC
CCGGGCGCACGACCGCTGTCCTGGGACCAAGTCGTACGGCGATGTCGCCT
ACCGCGCCTGGGGCCGTCCAGGCAAGTGGCTCGTGGATTTCCTGCTCGCC
CTCAATCAGATTTCCTGGGTCCCCGTCTATTTCCTTTTCGTCCAGCAGAA
CCTCGTGCAAGCCATTCCTGGTCTGGACCGCCTCGTTTCCCGTGAGGGCC
TGATTGCAATTCAGCTTCTCATCTACGTCCCCCTCTCTTGGCTCCGACAC
ATCAAGTACTTGGCGACTGCCAATTTGGTGGCCAATATTTTTGTGGGTGT
GGGCCTGGTTGCGTGCCTTGTCTGGTCCTGCACGGTGCTCGCGACGGATG
GCCCTGCCCCTGGCATTCACATGTTCAACCGCGCATCCTGCTTCCTCTTC
CTGGGCTCGGTGGCCGTTGCATTCGAGGGCATGTCCCTGGTCTTGCCCAT
CAAACGGTCCATGAAAAGGCCGGAACGCTTTGAGGCCCTGGTCGCGACGT
CGATGGCGGGGCTTTGCGTGTTGGTGTGGAGCATAGGTGCCATGGGCTAC
TTGGCCTTCGGGAACAGTGTGGAGCCCTTTGTGACGAACGAACTTCCCAC
TCAGGGAGTGCTGGGGCCCGCCGTTAGGATCATGTACAGTCTGGCCATTA
TTTGCACGTACCCCTTGCAGCTTTTTCCGGGAACGATCATCTTGGAGGAG
TACCTGGTGGAGCCGATGGGGCTAGTGCCCTCGAGGCGGAAAGTGGCCAA
GAACGTGTTGCGCCTCCTGGTCGTGTTAGGCACCTGTCTGACAGCCATCT
ACGCAGGGAAGGCGCTCGACCATTTCGTCGCCTTGATTGGCACGGTCGGA
AGCTTGCCGTTGGGGCTGATGTTGCCCACACTGGTGCATCTGTGTCTTTT
CTGGGGGACAACGTCGGTGCGTATGAGGGTTTTCCACGTGTTTCTGGTCA
TGCTAGGCTGCCTAGCGATTATCTTATCCTTCAGTATCACCATCTCCACG
TGGTGAGTAGTGTTATGGAAAGAAATAGTGATCAGTGTGAAGACAGCAGG
GGTGAGGTGCGTCACTCAATTATGCGTAGGCGTTTCAATGAGCGTACAGA
GAACACCATCTATGTTCTTTGGGAAAACTGGCTCAATGAGTTCTTGCAAG
CTCGCGCATGACTGCATGTGGAAGCGTACAACGGTTCAAGCACTCCATTT
ATAGAATAGCGGTTCGCGAAAAGTCATGTATATATACAATGTAAGACGAA
AATGAATAGCAATAGTCGCTTCATTTGCGAGGACCGCGTCGCCTATCTTT
CTACTTTTTGGCTTTTGTAAGTGTTGTACATCAAAGCC
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protein sequence of rna3061

>rna3061-protein ID=rna3061-protein|Name=rna3061|organism=Nannochloropsis gaditana|type=polypeptide|length=302bp
MGRREVEGAGGREEEEEDEEEEEKEEEEEEEEEEEEEEEEEEEVEEEEEE
EEEEHRAGRGGYKRPYALVAVAGNGERAPSAPESVSKGLDWPQSPSRPSP
CVGDVLGYQTLNLDGGSWTPVLSPVHAGIVRAVQGDGLLKLETQCVEDEV
TRSGGRKRTSARGVREARGKGCLVEVEWEGLVSVRALAGPTFERITRRRQ
REESGLEETCDNVDGRTSRDGSCLGSKSCSSSSGDGGGRIRKMRKEDVLN
GAAEGPSGELSDFVDYDSDLAAMLRRRWMEVSGSDGGEISRRGVEVGGDI
EV
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mRNA from alignment at CM002460.1:597925..599058-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3061 ID=rna3061|Name=rna3061|organism=Nannochloropsis gaditana|type=mRNA|length=1134bp|location=Sequence derived from alignment at CM002460.1:597925..599058- (Nannochloropsis gaditana)
GGGAGGACGGGAGAAGCGAGGAGGAGGGAAGGATAAGGGGGGGGAGGAAG
AAAGAGGCGGTCGGGTTTGTTTTCACGGATCGCTCTTCTATGGGGAGAAG
GGAGGTAGAAGGAGCGGGAGGGAGGGAGGAGGAGGAAGAAGACGAGGAGG
AGGAGGAGAAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAG
GAGGAGGAAGAGGAGGAGGTGGAGGAGGAGGAGGAGGAAGAAGAGGAAGA
ACACCGGGCAGGGCGAGGGGGGTATAAAAGGCCCTATGCGCTTGTCGCCG
TGGCCGGGAATGGAGAGAGGGCACCATCGGCACCAGAGAGCGTGTCGAAG
GGACTCGACTGGCCGCAGTCGCCAAGCCGCCCCTCTCCCTGCGTCGGAGA
CGTGCTCGGCTACCAGACTCTGAATCTGGACGGGGGAAGCTGGACTCCGG
TCCTGAGTCCTGTCCATGCGGGCATCGTGCGCGCGGTGCAGGGCGACGGG
CTGTTGAAATTGGAGACGCAGTGTGTTGAGGATGAGGTGACAAGGTCGGG
CGGAAGGAAGCGGACGAGTGCCAGAGGCGTGAGGGAGGCGCGGGGGAAGG
GCTGCCTGGTGGAGGTGGAGTGGGAGGGGCTGGTCAGTGTAAGGGCACTG
GCCGGGCCCACGTTCGAGCGGATCACACGACGACGGCAGAGGGAGGAAAG
CGGCCTGGAGGAAACTTGCGACAATGTTGATGGCCGCACTTCAAGAGATG
GCAGTTGTTTGGGCAGTAAAAGCTGTAGCAGCAGCAGTGGCGATGGTGGT
GGTCGCATTCGAAAAATGCGAAAGGAGGACGTCCTTAATGGGGCGGCGGA
AGGACCAAGTGGCGAACTGAGTGATTTTGTAGACTATGATAGTGATCTAG
CTGCCATGTTGCGGCGGAGATGGATGGAGGTGAGTGGTAGCGATGGGGGA
GAGATAAGCAGGAGGGGCGTTGAGGTGGGGGGGGACATTGAGGTTTAGTG
GATCAATCTTGCCTTAAAGCACTCACGTGGAGGAAATCCACCTGAGAGTG
TACATTTTGCTGTGCTTAAGTGGTGCACAATTTTGTTGCAATTGTCGCGA
CGCGATGAATGAATCAATCAAAGCACTTTCAGAG
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Coding sequence (CDS) from alignment at CM002460.1:597925..599058-

>rna3061 ID=rna3061|Name=rna3061|organism=Nannochloropsis gaditana|type=CDS|length=909bp|location=Sequence derived from alignment at CM002460.1:597925..599058- (Nannochloropsis gaditana)
ATGGGGAGAAGGGAGGTAGAAGGAGCGGGAGGGAGGGAGGAGGAGGAAGA
AGACGAGGAGGAGGAGGAGAAGGAGGAAGAGGAGGAGGAGGAGGAAGAGG
AGGAGGAGGAGGAGGAGGAAGAGGAGGAGGTGGAGGAGGAGGAGGAGGAA
GAAGAGGAAGAACACCGGGCAGGGCGAGGGGGGTATAAAAGGCCCTATGC
GCTTGTCGCCGTGGCCGGGAATGGAGAGAGGGCACCATCGGCACCAGAGA
GCGTGTCGAAGGGACTCGACTGGCCGCAGTCGCCAAGCCGCCCCTCTCCC
TGCGTCGGAGACGTGCTCGGCTACCAGACTCTGAATCTGGACGGGGGAAG
CTGGACTCCGGTCCTGAGTCCTGTCCATGCGGGCATCGTGCGCGCGGTGC
AGGGCGACGGGCTGTTGAAATTGGAGACGCAGTGTGTTGAGGATGAGGTG
ACAAGGTCGGGCGGAAGGAAGCGGACGAGTGCCAGAGGCGTGAGGGAGGC
GCGGGGGAAGGGCTGCCTGGTGGAGGTGGAGTGGGAGGGGCTGGTCAGTG
TAAGGGCACTGGCCGGGCCCACGTTCGAGCGGATCACACGACGACGGCAG
AGGGAGGAAAGCGGCCTGGAGGAAACTTGCGACAATGTTGATGGCCGCAC
TTCAAGAGATGGCAGTTGTTTGGGCAGTAAAAGCTGTAGCAGCAGCAGTG
GCGATGGTGGTGGTCGCATTCGAAAAATGCGAAAGGAGGACGTCCTTAAT
GGGGCGGCGGAAGGACCAAGTGGCGAACTGAGTGATTTTGTAGACTATGA
TAGTGATCTAGCTGCCATGTTGCGGCGGAGATGGATGGAGGTGAGTGGTA
GCGATGGGGGAGAGATAAGCAGGAGGGGCGTTGAGGTGGGGGGGGACATT
GAGGTTTAG
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Synonyms
Publications