rna3059, rna3059 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3059
Unique Name	rna3059
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	801
Alignment location	CM002460.1:591818..595754 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100256g3.1475.mrna
Orig protein id	gnl\|cribi\|Naga_100256g3.1475
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:591818..595754 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100256g3	gene2937	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3059	rna3059-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27623.1	cds3051	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:591818..595754+
coding sequence from alignment at CM002460.1:591818..595754+

mRNA sequence

>rna3059 ID=rna3059|Name=rna3059|organism=Nannochloropsis gaditana|type=mRNA|length=801bp
ATGCGAACACTGCTTTTCTTCCTGCAAGTTTCACTTCTTTGGCCGTCTGT
TAACTCGGACGGCCCCCTCTTTGGCCGGCATCCTCGCCCTGTGCCCCCCC
AGCCCGCGAAGTCGGGACGTTGGCTCTTGCACGAAAGCACATGGGGTGTC
TTATCCACCGTCTCGACTCTTCCTGGCATCGCAGGAGCACCATTTGGCAA
CCCACAGTCGTTGGTGGATGGCCCGTACCGCGATGGCTTATTCGGGGACA
ATTCAACGGGGATCCCGTATTTCTTCGTGTCAGAATTAGACGTCTCGCAG
CAAGATGCTTCTGCCAACTCCCTGGTGTCTCTGACAGTATCGGAAGCTGG
AGTTTCAAGCGAGTGTGCGATGCTAGATCCCGAAAGTCCCTTGTGCATTC
GCTTAACCGTGACCGGCGACTTGGTCGAAGTAGTGGACGAGGAAGAGACA
GCGTTTGCGATGCAGGCTTTATTCCAACGGCATCCCCAAATGCAAACATG
GCCTACGGACCACGGCTGGAAGGTGAAGAAGATTGTCCCTCGGCATATTT
TTGTGCTGGACATGTTTGGTGGGGTCAAGCCCGTTAGCGTGGACGAGTAC
TTGGAAAAATGTGGAGCACTCTACCGCGCAGAATCCCGCACTAGATGTGA
ATGGATGGGGGTTAGCATGAGAAAATTCTTTGTCGCTCAGATAAACATGT
GGTTGGGAAGGCAAGGCCTCGCGAAGAGAAATCAACACGTAGACCTGAGC
TTCTATCCAAGTCTCTTTGAAGAAAACTTGTATATGTCTGGCTCGTATTG
A

protein sequence of rna3059

>rna3059-protein ID=rna3059-protein|Name=rna3059|organism=Nannochloropsis gaditana|type=polypeptide|length=1171bp
MNDNTASRRGLNPGIFPSHVPTYSGHFHRPHRVPASPVTYVGSPYQVSLA
EAGQRKRLLLLRRPLGPGDPWTEVSDIAIDVGRRYFRPRSLDAAQDLLSD
HCLRKGDRVVLNLLPAAAETLASEVEGLRTRLRASVQAELEVREGMIEAD
EAGFMAGLDGAMESAPGGVSLESGIMDYETLGTPAVWRAYMAEASFGDAS
SSSGGGKGQQKVIGEGLELIEAWESSTGQNVMSPTAHTAPATPTTVGGGS
TGAVRLEFKKVKAVGYGPFLKAVEYPLETRGLVLLRGKNMDDPGAESNAA
GKSKLAMAAQWALTGDGDEKPVMDAKVTDVAFDVSSRGKAAFAEVTLWGS
VNDLPFQVTRKRGLKTNQLRFMLNGEDMTRQTARDTQRGIEEALGLDMDF
LSLAIFCGQHQMNGLLEATDVKLKERLSKIVRLGVWEDIKEKAKAGAKRY
QEEGLHAQTQVRVCELDLERQELEEVELMEALSPPSGIEAGNVSGVGANV
QLLGGTVRTLDQVEMELGFLSRQVEEAQTAWKECLERRKEWAEGQAQAGQ
ADGIRRERLRTLQKGIEEDERAIAGLQDRWDPSTYWAEMQRWGVIPADAT
MDPDSGLAFAAHVPAQSWEEKLIAVESAHATCLAEVGAATGDLRKVEGAL
ESLSTGVKVSRPGMAGTDAKEEADGCPTCGRAWDEGDTDAKSKAIAHVQG
EISKHRATLQESEERKTRLQKQKALLSRMVEAHVEYLRDVQAWQSACQRL
RSRGQELIKVEEEIAKGTIPVWESSDKIQSTQPVDELEAREHEFQELQTR
INKLQEERPLLIKQAAELQARERETAELRKRLERKRSELTKARERLEAAR
SLHVEQEEKARLYRELVDRFGMRGIQAFVLRGAVAQLERLANHFLTVLSE
GGLRLGLSLEGERISKEVKVRGGDGVFHDRTLSHLSGGQWRRASLAALLA
FRELSRLRSRVDCNLIVLDEVLNHLDGAGRARVGKLLRAMVQIEGDEGQE
QSTAAGTQMGGKSARPGLQTAIVILQDSAAIELEDTFDSIDEVVKEGDVS
RVVLDERLEQYTQGSEPQFLAFEEDGRKDEVVRTMTEDMDSRDAGHPFGD
RDYYVVDVDQQSRDGCFFNSTNAPPAHDDEYSKVQKPAKDKKKQQQEHTT
EIATRVVKGGWLDGMEEIAIK

mRNA from alignment at CM002460.1:591818..595754+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3059 ID=rna3059|Name=rna3059|organism=Nannochloropsis gaditana|type=mRNA|length=3937bp|location=Sequence derived from alignment at CM002460.1:591818..595754+ (Nannochloropsis gaditana)
CTGCCTTACGCCCGCGATTCGGCCTCAACGCGCGCGTTTTTGGCTGCGTA
CCGCGACCCCatcgagcaggaggcagggtcctcgcccccccccatcggAG
CCGTCTTCTGCCACGTGGATGTCCGTGGCGCTCCTATGAATGACAACACC
GCCTCTCGCCGGGGTCTGAATCCAGgaatttttccttcccacgtcCCCAC
CTACTCCGGACACTTCCATAGACCCCACCGGGTGCCCGCTAGCCCGGTTA
CCTACGTTGGGTCGCCCTACCAAGTGAGCCTGGCGGAGGCCGGTCAAAGG
AAacgcttgctcctcctccgtcgaccCCTCGGGCCAGGTGACCCCTGGAC
GGAAGTATCCGATATAGCCATCGATGTGGGTCGGCGTTACTTTCGCCCCC
GCAGCCTTGATGCCGCCCAGGACCTGCTCTCCGACCACTGCCTGCGGAAA
GGCGATCGGGTGGTTCTGAACCTCttaccagcagcagccgagACGTTGGC
CAGCGAGGTAGAGGGGCTCCGAACGCGGCTGCGGGCGAGTGTACAGGCAG
AACTGGAAGTCAGGGAGGGCATGAtagaggcggacgaggcgggcTTCATG
GCTGGTCTGGATGGGGCGATGGAGAGCGCTCCCGGGGGGGTAAGTCTGGA
GTCAGGGATAATGGACTACGAGACCTTAGGCACGCCTGCGGTTTGGCGGG
CTTACATGGCCGAAGCAAGTTTTGGGGAtgcgagcagcagcagcggcggg
ggcaagggTCAGCAGAAGGTGATAGGTGAGGGCCTGGAACTGATTGAGGC
GTGGGAGTCGTCGACCGGCCAAAATGTAATGAGCCCTACCGCCCATACAG
CGCCTGCAACGCCCACCACCGTGGGAGGCGGCTCGACGGGGGCGGTGCGC
TTAGAATTCAAAAAGGTCAAAGCCGTTGGCTACGGCCCATTCTTGAAGGC
GGTGGAGTATCCTCTGGAAACCCGAGGGCTGGTTCTGTTGCGAGGCAAAA
ACATGGACGATCCGGGCGCTGAGAGCAACGCCGCCGGGAAATCGAAACTG
GCGATGGCAGCTCAGTGGGCTTTGACAGGCGACGGGGACGAGAAGCCAGT
CATGGACGCCAAGGTCACAGACGTAGCCTTTGACGTCTCTTCCCGCGGGA
AAGCCGCCTTTGCGGAGGTGACGCTGTGGGGGAGCGTGAAcgacctcccc
ttccaggtGACGCGCAAGAGAGGATTGAAGACAAACCAGCTCCGGTTCAT
GCTCAACGGCGAGGACATGACACGGCAGACAGCCCGAGACACTCAGCGCG
GGATtgaggaggccttgggccTGGATATGGACTTCTTGAGCCTTGCCATC
TTTTGCGGACAGCACCAGATGAATGGACTACTGGAGGCGACCGATGTCAA
GCTCAAGGAGCGGCTTTCCAAAATCGTGAGGCTGGGGGTGTGGGAAGACA
TAAAGGAGAAGGCCAAGGCTGGCGCCAAGAGGTaccaggaggaaggtctG
CATGCACAGACTCAGGTGAGAGTGTGTGAGTTGGACCTGGAGCGGCAAGA
GCTGGAAGAGGTCGAGCTCATGGAGGCTTTGTCGCCTCCGTCGGGTATCG
AGGCCGGAAACGTGAGCGGCGTGGGAGCCAATGTACAGTTGCTGGGCGGG
ACAGTGCGCACACTGGATCAAGTGGAAATGGAACTGGGATTTTTAAGCAG
GCAAGTGGAAGAGGCACAAACGGCTTGGAAGGAGTGTCTAGAACGACGAA
AAGAGTGGGCAGAGGGACAGGCCCAGGCTGGGCAGGCCGACGGGATCCGG
AGGGAGCGCTTGCGAACACTCCAAAAAGGgatcgaagaggacgaaaggGC
GATCGCAGGCCTGCAAGATCGATGGGATCCATCCACTTACTGGGCAGAGA
TGCAGCGATGGGGGGTAATTCCTGCGGACGCAACAATGGACCCTGATTCG
GGGCTGGCATTTGCTGCCCATGTGCCGGCGCAAAGCTGGGAAGAGAAGCT
CATTGCAGTGGAAAGCGCGCACGCCACGTGCCTGGCCGAAGTGGGGGCTG
CGACGGGGGACTTGCGAAAAGTCGAGGGGGCCTTGGAGTCTCTTTCTACG
GGAGTGAAGGTCTCTCGACcggggatggcggggacggacgcgaaagagga
agcggatggGTGTCCTACGTGTGGGCGTGCCTGGGACGAGGGCGACACCG
ACGCCAAGTCCAAGGCCATTGCGCATGTACAGGGAGAAATAAGCAAGCAC
CGGGCCACGCTGcaagagagcgaggaaaggaaaactCGGCTGCAGAAACA
AAAAGCCTTGCTTTCGCGTATGGTGGAGGCTCATGTGGAATATCTTCGCG
ACGTGCAAGCTTGGCAAAGTGCGTGCCAGCGTCTTCGGTCCCGAGGTCAA
GAATTGAtcaaagtggaggaagaaatagCAAAAGGCACGATTCCAGTGTG
GGAATCGAGCGACAAAATACAAAGCACCCAACCTGTGGACGAACTGGAGG
CGCGGGAACATGAATTTCAGGAGCTGCAAACGCGAATCAACAAGCTTCAA
GAGGAGCGACCCCTTCTGATCAAGCAAGCCGCCGAGCTTCAGGCTCGAGA
ACGAGAGACTGCAGAACTTCGCAAGCGCttggagagaaaaagaagtgAAC
TGACCAAGGCCAGGGAACGCCTTGAGGCCGCGCGTAGTCTTCATGTcgag
caagaagaaaaggcaCGGCTGTACAGGGAGCTTGTCGACAGGTTTGGTAT
GCGCGGTATCCAGGCATTTGTATTGCGTGGGGCAGTGGCCCAACTTGAAC
GACTGGCCAACCATTTTCTGACGGTGTTATCGGAAGGGGGACTCCGATTG
GGCTTATctttggaaggggaaaggatcTCGAAAGAAGTCAAGGTCCGGGG
TGGGGATGGCGTCTTTCATGATCGGACTTTGTCTCATTTGTCGGGAGGAC
AATGGAGACGAGCAAGTCTTGCGGCGTTGCTGGCTTTCCGAGAGTTGAGT
CGATTGCGGTCGCGCGTTGATTGCAATTTGATCGTTTTGGACGAAGTCCT
CAATCATTTGGACGGGGCGGGTAGAGCACGCGTAGGCAAACTCCTACGGG
CTATGGTTCAAAtcgaaggagatgaaggacAGGAACAAAGTACTGCTGCA
GGAACACAAATGGGAGGGAAATCGGCACGTCCGGGGTTACAAACTGCGAT
CGTCATTCTGCAGGACTCGGCGGCAATCGAACTGGAGGATACATTCGACT
CCATCGACGAggtcgtgaaggagggggacgtgaGCCGAGTGGTTTTGGAT
GAGCGACTTGAGCAATATACACAAGGAAGTGAACCGCAATTTCTCGCGTT
CGAGGAAGATGGTAGGAAGGATGAAGTGGTGCGGACAATGACAGAAGACA
TGGACTCTAGGGATGCTGGCCATCCATTTGGCGACCGCGACTATTACGTT
GTGGATGTGGATCAACAGTCACGTGACGGATGCTTTTTCAACTCGACAAA
TGCCCCGCCCGCACATGACGATGAGTACAGTAAGGTGCAAAAACCTGCta
aggacaagaaaaagcagcAACAGGAACACACCACGGAGATAGCCACCCGT
GTGGTCAAAGGCGGCTGGTTagatgggatggaggagattgCCATAAAGTA
AAGCAACTTGGTCCGATTGTATATTTCAGGCTTTGATGTACAACACTTAC
AAAAGCCAAAAAGTAGAAAGATAGGCGACGCGGTCCTCGCAAATGAAGCG
ACTATTGCTATTCATTTTCGTCTTACATTGTATATATACATGACTTTTCG
CGAACCGCTATTCTATAAATGGAGTGCTTGAACCGTTGTACGCTTCCACA
TGCAGTCATGCGCGAGCTTGCAAGAACTCATTGAGCCAGTTTTCCCAAAG
AACATAGATGGTGTTCTCTGTACGCTCATTGAAACGC

Coding sequence (CDS) from alignment at CM002460.1:591818..595754+

>rna3059 ID=rna3059|Name=rna3059|organism=Nannochloropsis gaditana|type=CDS|length=3516bp|location=Sequence derived from alignment at CM002460.1:591818..595754+ (Nannochloropsis gaditana)
ATGAATGACAACACCGCCTCTCGCCGGGGTCTGAATCCAGgaatttttcc
ttcccacgtcCCCACCTACTCCGGACACTTCCATAGACCCCACCGGGTGC
CCGCTAGCCCGGTTACCTACGTTGGGTCGCCCTACCAAGTGAGCCTGGCG
GAGGCCGGTCAAAGGAAacgcttgctcctcctccgtcgaccCCTCGGGCC
AGGTGACCCCTGGACGGAAGTATCCGATATAGCCATCGATGTGGGTCGGC
GTTACTTTCGCCCCCGCAGCCTTGATGCCGCCCAGGACCTGCTCTCCGAC
CACTGCCTGCGGAAAGGCGATCGGGTGGTTCTGAACCTCttaccagcagc
agccgagACGTTGGCCAGCGAGGTAGAGGGGCTCCGAACGCGGCTGCGGG
CGAGTGTACAGGCAGAACTGGAAGTCAGGGAGGGCATGAtagaggcggac
gaggcgggcTTCATGGCTGGTCTGGATGGGGCGATGGAGAGCGCTCCCGG
GGGGGTAAGTCTGGAGTCAGGGATAATGGACTACGAGACCTTAGGCACGC
CTGCGGTTTGGCGGGCTTACATGGCCGAAGCAAGTTTTGGGGAtgcgagc
agcagcagcggcgggggcaagggTCAGCAGAAGGTGATAGGTGAGGGCCT
GGAACTGATTGAGGCGTGGGAGTCGTCGACCGGCCAAAATGTAATGAGCC
CTACCGCCCATACAGCGCCTGCAACGCCCACCACCGTGGGAGGCGGCTCG
ACGGGGGCGGTGCGCTTAGAATTCAAAAAGGTCAAAGCCGTTGGCTACGG
CCCATTCTTGAAGGCGGTGGAGTATCCTCTGGAAACCCGAGGGCTGGTTC
TGTTGCGAGGCAAAAACATGGACGATCCGGGCGCTGAGAGCAACGCCGCC
GGGAAATCGAAACTGGCGATGGCAGCTCAGTGGGCTTTGACAGGCGACGG
GGACGAGAAGCCAGTCATGGACGCCAAGGTCACAGACGTAGCCTTTGACG
TCTCTTCCCGCGGGAAAGCCGCCTTTGCGGAGGTGACGCTGTGGGGGAGC
GTGAAcgacctccccttccaggtGACGCGCAAGAGAGGATTGAAGACAAA
CCAGCTCCGGTTCATGCTCAACGGCGAGGACATGACACGGCAGACAGCCC
GAGACACTCAGCGCGGGATtgaggaggccttgggccTGGATATGGACTTC
TTGAGCCTTGCCATCTTTTGCGGACAGCACCAGATGAATGGACTACTGGA
GGCGACCGATGTCAAGCTCAAGGAGCGGCTTTCCAAAATCGTGAGGCTGG
GGGTGTGGGAAGACATAAAGGAGAAGGCCAAGGCTGGCGCCAAGAGGTac
caggaggaaggtctGCATGCACAGACTCAGGTGAGAGTGTGTGAGTTGGA
CCTGGAGCGGCAAGAGCTGGAAGAGGTCGAGCTCATGGAGGCTTTGTCGC
CTCCGTCGGGTATCGAGGCCGGAAACGTGAGCGGCGTGGGAGCCAATGTA
CAGTTGCTGGGCGGGACAGTGCGCACACTGGATCAAGTGGAAATGGAACT
GGGATTTTTAAGCAGGCAAGTGGAAGAGGCACAAACGGCTTGGAAGGAGT
GTCTAGAACGACGAAAAGAGTGGGCAGAGGGACAGGCCCAGGCTGGGCAG
GCCGACGGGATCCGGAGGGAGCGCTTGCGAACACTCCAAAAAGGgatcga
agaggacgaaaggGCGATCGCAGGCCTGCAAGATCGATGGGATCCATCCA
CTTACTGGGCAGAGATGCAGCGATGGGGGGTAATTCCTGCGGACGCAACA
ATGGACCCTGATTCGGGGCTGGCATTTGCTGCCCATGTGCCGGCGCAAAG
CTGGGAAGAGAAGCTCATTGCAGTGGAAAGCGCGCACGCCACGTGCCTGG
CCGAAGTGGGGGCTGCGACGGGGGACTTGCGAAAAGTCGAGGGGGCCTTG
GAGTCTCTTTCTACGGGAGTGAAGGTCTCTCGACcggggatggcggggac
ggacgcgaaagaggaagcggatggGTGTCCTACGTGTGGGCGTGCCTGGG
ACGAGGGCGACACCGACGCCAAGTCCAAGGCCATTGCGCATGTACAGGGA
GAAATAAGCAAGCACCGGGCCACGCTGcaagagagcgaggaaaggaaaac
tCGGCTGCAGAAACAAAAAGCCTTGCTTTCGCGTATGGTGGAGGCTCATG
TGGAATATCTTCGCGACGTGCAAGCTTGGCAAAGTGCGTGCCAGCGTCTT
CGGTCCCGAGGTCAAGAATTGAtcaaagtggaggaagaaatagCAAAAGG
CACGATTCCAGTGTGGGAATCGAGCGACAAAATACAAAGCACCCAACCTG
TGGACGAACTGGAGGCGCGGGAACATGAATTTCAGGAGCTGCAAACGCGA
ATCAACAAGCTTCAAGAGGAGCGACCCCTTCTGATCAAGCAAGCCGCCGA
GCTTCAGGCTCGAGAACGAGAGACTGCAGAACTTCGCAAGCGCttggaga
gaaaaagaagtgAACTGACCAAGGCCAGGGAACGCCTTGAGGCCGCGCGT
AGTCTTCATGTcgagcaagaagaaaaggcaCGGCTGTACAGGGAGCTTGT
CGACAGGTTTGGTATGCGCGGTATCCAGGCATTTGTATTGCGTGGGGCAG
TGGCCCAACTTGAACGACTGGCCAACCATTTTCTGACGGTGTTATCGGAA
GGGGGACTCCGATTGGGCTTATctttggaaggggaaaggatcTCGAAAGA
AGTCAAGGTCCGGGGTGGGGATGGCGTCTTTCATGATCGGACTTTGTCTC
ATTTGTCGGGAGGACAATGGAGACGAGCAAGTCTTGCGGCGTTGCTGGCT
TTCCGAGAGTTGAGTCGATTGCGGTCGCGCGTTGATTGCAATTTGATCGT
TTTGGACGAAGTCCTCAATCATTTGGACGGGGCGGGTAGAGCACGCGTAG
GCAAACTCCTACGGGCTATGGTTCAAAtcgaaggagatgaaggacAGGAA
CAAAGTACTGCTGCAGGAACACAAATGGGAGGGAAATCGGCACGTCCGGG
GTTACAAACTGCGATCGTCATTCTGCAGGACTCGGCGGCAATCGAACTGG
AGGATACATTCGACTCCATCGACGAggtcgtgaaggagggggacgtgaGC
CGAGTGGTTTTGGATGAGCGACTTGAGCAATATACACAAGGAAGTGAACC
GCAATTTCTCGCGTTCGAGGAAGATGGTAGGAAGGATGAAGTGGTGCGGA
CAATGACAGAAGACATGGACTCTAGGGATGCTGGCCATCCATTTGGCGAC
CGCGACTATTACGTTGTGGATGTGGATCAACAGTCACGTGACGGATGCTT
TTTCAACTCGACAAATGCCCCGCCCGCACATGACGATGAGTACAGTAAGG
TGCAAAAACCTGCtaaggacaagaaaaagcagcAACAGGAACACACCACG
GAGATAGCCACCCGTGTGGTCAAAGGCGGCTGGTTagatgggatggagga
gattgCCATAAAGTAA

Synonyms

Publications