rna3056, rna3056 (mRNA) Nannochloropsis gaditana

Overview
Namerna3056
Unique Namerna3056
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2180
Alignment locationCM002460.1:581500..582810 -

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Properties
Property NameValue
Productureidoglycolate dehydrogenase
Orig transcript idgnl|cribi|Naga_100256g6.1473.mrna
Orig protein idgnl|cribi|Naga_100256g6.1473
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:581500..582810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100256g6gene2934Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27621.1cds3048Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3056rna3056-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3056 ID=rna3056|Name=rna3056|organism=Nannochloropsis gaditana|type=mRNA|length=2180bp
TGTGGTTTCTAAGAAAAGTATTATCAAAGCCGTCCGGAGGATTGTTTCCT
CAAAAGGTCAAGGCACCAAAATTCAGTTAGCCAGAGGCCAGCCGGGAGGT
TCGCGACAGGAAGAAGGAAGTAGAAATATACTACCCATACGTTTCTGACA
TGATGAGCGAACAACGGTCGATGTACATCGAATGACAGTATCTTAACTTA
ACACCTCAAATGAGTGCCTTCTTCTATCTTAACCTGTGTCAGGGGCACCA
TTTCGTCTCATGGCGCCAAGGGGCCCTGACGAGACACCTGAAAATGGTTC
ACTTTGGACGTCAACAAATCCGCAGCAATATTACGGAGGCATAGCATCAA
CATTTCCACAATCTCCCGAATTTGTAGTGCCAAGCAGATCGCGAACAGGA
AGTAGTTTGCCGCTTTCGACACAGGAGCACCGTATCATACCCCACTCGCC
TCTTTTCTCCTCCTGCGCCCTTGTACTTCGAACACGCGAATCCTACGAGG
ACTTCTCCCGACAGAGTCGTATAAAAGATGAGGGTGCAGCAGGTGTCGAG
GGTGCGTTTTTCACTCTGGTAAAAGTGTGCATGGGCACGGGCGCCTTGGC
CTTGCCTTACGCGTTCTTGAATGGCGGGTTGTTTTGGGGTGCTCTGGGCA
TCATTCTTATGGCGCGGTGGAACTACTTTGCATCTAATCGGCTGTTGGCA
TGCAAAGAGTTGCTAGATTCAGCTGCGTTGGGTGCAGATGACGTGGAGGC
TAACGACGTGTACGCTTTCATTGCCTTGAAGGCCCTCGGCCGACCAGGAG
CCATCTTGGTGCGCGCCGCCACCGGTGTGACCTTCGTGGGATGCGGTGTC
TCGTATTTGATCGCAGCGAGCGACCTCCTGGAAATCACGCCTGTGAGCCT
GGTTTGGGCGGGATCGCCAATCTTTACACGCTTGGCCAACACCTTGCTTT
GTGTGCTGGTCGTTCTGCCTCTGTCCTGTGCCAAGTCTCTGTCCTTCCTC
TCCTACACGTCCTTCTTCGGCATCATCGCCTTACTACTATCCTTCATCAC
CATCATTGCCCTGGGGATCAACCACACAAGCCCCACCGCGGCGGCGGCGG
CGGCAGCGGCGGTCGAAGCGGGCGGCAGCCCCAGTGCCTGGGACCGTGCT
TTCGAAACGGACGCGAAGGGTCTCTCCCGCTTTTTCGGCATCGCCTGTTT
CTCTTTCGGCATTCCCCCTCTCCTCTTTCCGATCCAAGGCAGCATGCCCT
GCCCCGAGTTCTTCCGCCCCGCGGTCGGGTTGGCTCTCGTCAGTGTGGCT
GCCGCCTATATCCTCATCGCGGAGACCGTCGTCCTGCTCTATGATTTCGT
GGTGCCACCCAACATCCTCACCGTTCTTTCCGCCTCCCCCCTCAGTACCA
CCGTGCGCCTGTCCATGGTATTAGTTTGCGTGCTCACCTACCCCTTGGCC
ATCGTTCCCCTGTGCGAGAGCGTGGAAAAGGCGTTGGAGGGGCCCCGCGT
GGCGCGAATCTACCGGTGGGAGTCACTGCAAGGCCCTACAAGGTACTACC
AGCCTCGAGACGAACCGGAGGCCTCGTCTTCCTCGCGCTCCATCCTCGAC
CAGTGCCTGGGTCGTCGAGAAGAGATCAGTAGGGAGACCCCCAGAAGCCC
TTCCGACAGGCCCCCGGGGCACATGCCACGGTACCAGCAGCCACATTCCA
AGAGCAGAACCTGGTCCTGGCGCGTTCTTATCCTCCGAGCTTGCATTGTT
CTTGCGACCGCTTTCCTTGCCACGTTGGTGCCGTGTTTTGGAGGAGTGGT
GGCTTTCTTGGGCGCCTTCTCGGTGGCTATCCTTTCCTTCGTCCTGCCCC
CGCTCTTCCATCTCATCCTCTTCAACGCACGACTACTGCGGCGGGAGGCC
TTGATTGACGTGGGGATGTTTTTCCTGGGTTTGGTCGTCTGTGTGGGTGC
CACCAGTCTCACAGCTAGGACGAACATATATCCCTTGGTGTCCTCGCACA
CGTGCCCGCACTGAATAGAAGGAGGGTGGCGAGCTGCGTGCCAGCCCGTC
CTCTGTAAATAGAGCCTAGGCAGTCGCCCCGGCTAGGACCAGGAGTGAAG
GCAAAAGTGTTCAGGTGGTTGGATCAGTTTCGGTGTACGCAGGTACTAGT
CAAAGAAAAAGCTTTGACACAAAGCAGGGT
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protein sequence of rna3056

>rna3056-protein ID=rna3056-protein|Name=rna3056|organism=Nannochloropsis gaditana|type=polypeptide|length=361bp
MPPTRKEEVEMDLSELEAVTQRLLQQSLNYNEEEAAIITRVLLYAQMRGN
SQGVIKLVTGGVPASDASTHTDIEVEHETKVSARLHGHGTAGMLVLHRAT
SMAIQKAREHGLSIVATHGTSSGTGAIGFYARSVADNGLVGIILSQSPEL
MAPHGSYEPIFGTNPFAFGIPRDDTSIPIVLDMATSAYAWYALKEARAAG
QPIPPDVAYDAEGHPTRDPSAALSGALRVFDRSHKGSHIALMVELLAGGL
TGADVEEKWQRENWGNLVVAIDPEVLGQGLAQFTAKVEAVVRRVEGAKPL
PGATAQERGDGSAQLRSGGDVRGPSLPGSRSEAEAATVAERGRIRLERSV
YENLMKEVASI
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mRNA from alignment at CM002460.1:581500..582810-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3056 ID=rna3056|Name=rna3056|organism=Nannochloropsis gaditana|type=mRNA|length=1311bp|location=Sequence derived from alignment at CM002460.1:581500..582810- (Nannochloropsis gaditana)
CCCTGTGGGATGCAATACGATAGCGCCGACGGTCATCTCATTCGCTCACT
TGGAAACCTCACAATCCTCCATACAATGAACAAGTCTACCTGCGTTTCCA
GCGGTCTTTTTGACAGGAATGCCTCCGACACGGAAAGAAGAAGTGGAAAT
GGATTTGAGTGAACTTGAGGCGGTGACGCAGCGCCTCCTTCAGCAGTCGT
TGAACTATAACGAGGAGGAGGCTGCCATCATCACTAGGGTGCTCCTATAC
GCCCAAATGCGGGGCAATAGCCAGGGTGTGATCAAGCTCGTGACCGGAGG
TGTCCCTGCTTCCGACGCCTCCACACACACCGATATCGAGGTTGAGCACG
AGACGAAGGTATCCGCCCGCCTGCACGGACATGGCACTGCTGGAATGCTT
GTCCTCCATCGTGCGACTTCGATGGCTATCCAGAAAGCTAGAGAGCATGG
GTTGAGCATTGTCGCCACCCATGGAACGTCGTCCGGTACGGGTGCCATTG
GATTCTATGCCCGCAGTGTCGCAGACAATGGTCTTGTGGGCATCATTCTC
TCGCAGAGTCCTGAGCTCATGGCGCCGCATGGATCGTACGAGCCGATCTT
CGGCACGAACCCTTTCGCTTTTGGCATCCCACGTGACGATACCTCAATTC
CGATAGTACTCGATATGGCTACCTCGGCGTATGCGTGGTACGCTCTAAAG
GAGGCTCGAGCTGCCGGGCAACCTATCCCCCCGGACGTGGCCTACGATGC
CGAGGGCCATCCTACCCGGGACCCGAGTGCAGCTCTCTCAGGAGCATTGC
GGGTTTTTGATCGCTCGCACAAGGGAAGTCACATCGCCCTGATGGTGGAG
CTTTTGGCGGGGGGGCTGACGGGAGCGGACGTGGAGGAGAAATGGCAGCG
AGAAAACTGGGGCAACCTGGTTGTGGCCATCGACCCCGAGGTCCTCGGGC
AGGGACTGGCTCAGTTTACAGCCAAGGTGGAGGCAGTGGTCAGACGAGTG
GAAGGTGCCAAGCCCTTGCCGGGGGCGACGGCGCAGGAACGGGGAGATGG
GAGCGCCCAGCTTAGGAGCGGCGGAGACGTCCGAGGTCCCTCCTTGCCGG
GCTCGCGCAGTGAGGCTGAGGCGGCGACAGTCGCAGAAAGGGGAAGGATC
AGATTAGAACGTAGTGTTTACGAGAATTTAATGAAAGAGGTCGCTTCTAT
TTAGGTGCCTGCGCGTGTGACACACACTAGGAAGCTGGCAACGAAAATGT
CTTTTGAGAATATCCTTTAAATTGCAACGAAATCTGGCGCGAAGCCATGT
CGATAAAACCC
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Coding sequence (CDS) from alignment at CM002460.1:581500..582810-

>rna3056 ID=rna3056|Name=rna3056|organism=Nannochloropsis gaditana|type=CDS|length=1086bp|location=Sequence derived from alignment at CM002460.1:581500..582810- (Nannochloropsis gaditana)
ATGCCTCCGACACGGAAAGAAGAAGTGGAAATGGATTTGAGTGAACTTGA
GGCGGTGACGCAGCGCCTCCTTCAGCAGTCGTTGAACTATAACGAGGAGG
AGGCTGCCATCATCACTAGGGTGCTCCTATACGCCCAAATGCGGGGCAAT
AGCCAGGGTGTGATCAAGCTCGTGACCGGAGGTGTCCCTGCTTCCGACGC
CTCCACACACACCGATATCGAGGTTGAGCACGAGACGAAGGTATCCGCCC
GCCTGCACGGACATGGCACTGCTGGAATGCTTGTCCTCCATCGTGCGACT
TCGATGGCTATCCAGAAAGCTAGAGAGCATGGGTTGAGCATTGTCGCCAC
CCATGGAACGTCGTCCGGTACGGGTGCCATTGGATTCTATGCCCGCAGTG
TCGCAGACAATGGTCTTGTGGGCATCATTCTCTCGCAGAGTCCTGAGCTC
ATGGCGCCGCATGGATCGTACGAGCCGATCTTCGGCACGAACCCTTTCGC
TTTTGGCATCCCACGTGACGATACCTCAATTCCGATAGTACTCGATATGG
CTACCTCGGCGTATGCGTGGTACGCTCTAAAGGAGGCTCGAGCTGCCGGG
CAACCTATCCCCCCGGACGTGGCCTACGATGCCGAGGGCCATCCTACCCG
GGACCCGAGTGCAGCTCTCTCAGGAGCATTGCGGGTTTTTGATCGCTCGC
ACAAGGGAAGTCACATCGCCCTGATGGTGGAGCTTTTGGCGGGGGGGCTG
ACGGGAGCGGACGTGGAGGAGAAATGGCAGCGAGAAAACTGGGGCAACCT
GGTTGTGGCCATCGACCCCGAGGTCCTCGGGCAGGGACTGGCTCAGTTTA
CAGCCAAGGTGGAGGCAGTGGTCAGACGAGTGGAAGGTGCCAAGCCCTTG
CCGGGGGCGACGGCGCAGGAACGGGGAGATGGGAGCGCCCAGCTTAGGAG
CGGCGGAGACGTCCGAGGTCCCTCCTTGCCGGGCTCGCGCAGTGAGGCTG
AGGCGGCGACAGTCGCAGAAAGGGGAAGGATCAGATTAGAACGTAGTGTT
TACGAGAATTTAATGAAAGAGGTCGCTTCTATTTAG
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Synonyms
Publications