rna3054, rna3054 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3054
Unique Name	rna3054
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	222
Alignment location	CM002460.1:578239..579020 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100256g8.1474.mrna
Orig protein id	gnl\|cribi\|Naga_100256g8.1474
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:578239..579020 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100256g8	gene2932	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3054	rna3054-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27622.1	cds3046	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:578239..579020+
coding sequence from alignment at CM002460.1:578239..579020+

mRNA sequence

>rna3054 ID=rna3054|Name=rna3054|organism=Nannochloropsis gaditana|type=mRNA|length=222bp
ATGACAGTACAAAGGCCACTTAGAGTCGCGGCCTGCGGTGGGGGATGGAT
AACACTTTTGGCTACTGCTGCATCAATGGCTCATCCCGCCATCGCCTTCT
TGCATGGCCCGCGAGCGCCATCATCATCGTGGACAGTGACCCAAAACCAT
GCTGTGCGCGATTTCTTACGGATAAGAGAGGACAATGGAAGCGAGAGCCA
CGGTCTGGACAGCACCATATGA

protein sequence of rna3054

>rna3054-protein ID=rna3054-protein|Name=rna3054|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
YRGHSLALGTGSGEEEDEDDGWDDLEDGAEEEEEGEGEGDDDLVEAMQQA
LWVFEVRSGFLERLVGKEAYRSEMIRRVRKETAGSAPEFLDRYPMYADHL
NEVLDGWGEITTEEWKGVDIDNKEDQMVEMLKVRGRAMVYVQSKMATFRP
PSVPPVLTERATESREEARAKLAEEEEARLESLSDEEVKRHWEAYEAYVV
KRFPQLREEIENMRNNRASEDLFEGEDGEEDEELDFDGF

mRNA from alignment at CM002460.1:578239..579020+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3054 ID=rna3054|Name=rna3054|organism=Nannochloropsis gaditana|type=mRNA|length=782bp|location=Sequence derived from alignment at CM002460.1:578239..579020+ (Nannochloropsis gaditana)
ATACAGAGGGCACTCTCTCGCTTTGGGGACAGggagcggggaagaagagg
acgaggacgacgggtGGGACGACCTGGAAGacggggcggaagaggaggag
gaaggagagggggaaggcgacgaTGACCTCGTGGAGGCGATGCAGCAGGC
CCTGTGGGTGTTCGAAGTGCGATCGGGGTTCTTGGAGCGCCTGGTAGGCA
AAGAGGCCTATCGGTCGGAAATGATCCGCCGGGTCCGCAAAGAAACCGCT
GGGTCGGCCCCCGAATTCTTGGACAGGTATCCCATGTACGCCGATCACTT
GAACGAAGTGTTGGATGGCTGGGGCGAGATCACTACTGAGGAATGGAAAG
GTGTTGATATCGATAATAAGGAGGACCAGATGGTGGAAATGCTGAAAGTT
CGCGGTCGTGCGATGGTCTACGTCCAGAGCAAAATGGCCACCTTCCGGCC
GCCATCCGTCCCCCCTGTCCTCACGGAGAGGGCCACAGAGAGCCGAGAGG
AAGCCCGGGCGAAGctcgcagaggaggaagaggcgaggTTGGAATCCTTa
agcgatgaggaggtgAAGCGCCATTGGGAGGCATACGAAGCATACGTCGT
CAAGCGCTTCCCGCAGTTGCGAGAAGAGATTGAGAATATGCGCAATAATA
GGGCATCAGAGGATTTgtttgagggggaggatggcgaggaggacgaagaa
ttGGATTTTGATGGGTTTTAGGCTAAAAGCTGCGGCGTCCCCGAAGGAAA
AAGCACCCCTAGATTGTGATTTCCTCTTGTGT

Coding sequence (CDS) from alignment at CM002460.1:578239..579020+

>rna3054 ID=rna3054|Name=rna3054|organism=Nannochloropsis gaditana|type=CDS|length=720bp|location=Sequence derived from alignment at CM002460.1:578239..579020+ (Nannochloropsis gaditana)
TACAGAGGGCACTCTCTCGCTTTGGGGACAGggagcggggaagaagagga
cgaggacgacgggtGGGACGACCTGGAAGacggggcggaagaggaggagg
aaggagagggggaaggcgacgaTGACCTCGTGGAGGCGATGCAGCAGGCC
CTGTGGGTGTTCGAAGTGCGATCGGGGTTCTTGGAGCGCCTGGTAGGCAA
AGAGGCCTATCGGTCGGAAATGATCCGCCGGGTCCGCAAAGAAACCGCTG
GGTCGGCCCCCGAATTCTTGGACAGGTATCCCATGTACGCCGATCACTTG
AACGAAGTGTTGGATGGCTGGGGCGAGATCACTACTGAGGAATGGAAAGG
TGTTGATATCGATAATAAGGAGGACCAGATGGTGGAAATGCTGAAAGTTC
GCGGTCGTGCGATGGTCTACGTCCAGAGCAAAATGGCCACCTTCCGGCCG
CCATCCGTCCCCCCTGTCCTCACGGAGAGGGCCACAGAGAGCCGAGAGGA
AGCCCGGGCGAAGctcgcagaggaggaagaggcgaggTTGGAATCCTTaa
gcgatgaggaggtgAAGCGCCATTGGGAGGCATACGAAGCATACGTCGTC
AAGCGCTTCCCGCAGTTGCGAGAAGAGATTGAGAATATGCGCAATAATAG
GGCATCAGAGGATTTgtttgagggggaggatggcgaggaggacgaagaat
tGGATTTTGATGGGTTTTAG

Synonyms

Publications