rna3053, rna3053 (mRNA) Nannochloropsis gaditana

Overview
Namerna3053
Unique Namerna3053
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1704
Alignment locationCM002460.1:576771..577119 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100059g32.8062.mrna
Orig protein idgnl|cribi|Naga_100059g32.8062
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:576771..577119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100059g32gene2931Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3053rna3053-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27657.1cds3045Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3053 ID=rna3053|Name=rna3053|organism=Nannochloropsis gaditana|type=mRNA|length=1704bp
TCACAGAAAATTTAAGAAATGGTTAGCATTTTATTGCTTTGCCCACACAT
AATGCCTAATGACTTGGTTGTGGCCGCAGCGCAGGAGAAGAGTTAGCTCC
TCCACCTCCCCTCAACTACCGCTGGCCTACTCTATCACTATGGAGGAAGA
ATCTGAAACATGGCCCCCGACCCTCCCACCTTCACCCAACTTCCAAGCTA
TTGCAGCTCCTTCGTACTCTGTCTCTCCAAACGGGCCATCCTCCGCTTGT
GCTTTTGGCACAAGCGTGCAAGAGACTGCTATGGAAGCTCTGAACGGGAA
GGCAGCGTGCGTGCGAGAGGGTTACTACCGGGATCGGTATATAGACTTCT
TCCGCCCAAACTATCCCCCGGTACCACGAATGTCACCCCTGATCAAGCGC
GGATATTTCACGCGCGTACGGGCATTGCAACTGATCATTGACAAATTCGA
GAAACAAGTCCTCGCGTCGTCATCCAACACTTTGTCTCACACGACTGAAG
AGGAACTTCCTCAGCCGCCATTACCTTCTCCACCACGTGTCAATCTTGTA
TTGCTAGGTGCAGGGCTTGACACCTTGTTTCTTCGATTGCGTGAGGAGGA
AGAAAATGCAAAGAAGAGTTCCAAGCACAACGGACAGGCGGTAACCCGCT
TCTGTTACGAAGTCGACTTTCCTCCCCTGATGAAGTATAAAGCGCATTGC
ATCTGGAAAAATGAGGAGCTTACTTCGCTATTGGGCGTCTCTCCAGCTAG
AGAAACGTCTCCAGGCGGCCGGCCAGACAGTCCCACCGTCGGCGGAGCAT
CTGTGATCTTGACCAGTCGACGCGTGACGAGCAGCTTCAGAGAGAATAAG
GGCGAAGACGGGCCCAGGCAGCAGCGATCCGGCTGCTATATCCTGGTGGC
TGGGGATCTGGCGGAGACTGCGGCGTTGGAACGGGCTTTGGAGGCGGCTG
AAATCGATTGGGCTGTTCCTACCCTGCTCATTACGGAGTGCGTGCTCGTG
TATATGGAGGCAGAGGCCAGTCGAGCCCTGGTGGAGTGGGCAGCAGCCAA
GTTTCACACGGCTGCCTGGGCGTCTTACGACATGATATCGCCGCAGGATG
TCTTCGGCAGCATGATGAGAAGCAATTTGAAGGCACGGGGCCTTTCTCTA
CCCGGTTTCGAGACCTGGGGCCGCAGCCTGAAGACGCAAATGGCCCGTTT
TGTGGGAGGAGAAGAAGGCGGCGTGGGTGGGGGGCCCTGGGAACGCGCTG
TAGGCGGGGACATGAACAATGTGTACGACCACTTCCTGCTGCCCGAGGAT
AGAGAAAAAGCGGCGACATTGGAGCATTTGGACGAGGTGGAGGAATGGCA
GATGCTCATGGGGCACTACTGTTACGTCGTGGCGACTCGAGGCGCAGCCA
TGAAGGGCTTTCTTCAAGGCCAGCCGGGTTTCAAATAGCATGTTCTGAAC
GGTGAACAGACAAAGTAGGATCCTTTAAGCAGATGAGAATGAAAAATTGC
AGGCCAAGCTCTAAACTTCATAAAGACGCGTGCAAATAATGACATGTAAA
GCTCTAGTTAAAAACACGCGGTACCTCACGAAGAGACGAAAATTAACTTC
GTATAATTTTTAATTTCAACAGTATTCAATCAAGCTCAACACGTTTATTC
TTATGTGGTCGACACAAAATTTAACTACCATAGCGACAAAAAATAATCTC
CGTC
back to top

protein sequence of rna3053

>rna3053-protein ID=rna3053-protein|Name=rna3053|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MTVQRPLRVAACGGGWITLLATAASMAHPAIAFLHGPRAPSSSWTVTQNH
AVRDFLRIREDNGSESHGLDSTI
back to top

mRNA from alignment at CM002460.1:576771..577119+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3053 ID=rna3053|Name=rna3053|organism=Nannochloropsis gaditana|type=mRNA|length=349bp|location=Sequence derived from alignment at CM002460.1:576771..577119+ (Nannochloropsis gaditana)
ATGACAGTACAAAGGCCACTTAGAGTCGCGGCCTGCGGTGGGGGATGGAT
AACACTTTTGGCTACTGCTGCATCAATGGCTCATcccgccatcgccttct
tgcATGGCCCGCGAGCGCCATCATCATCGTGGACAGTGACCCAAAACCAT
GCTGTGCGCGATTTCTTACGGATAAGAGAGGACAATGGAAGCGGTGCGAG
ACGAAAGCGGGCCTTCATTGTCAATTTTGCCCACTCAAGGACCGGGCCCG
CGGGGGCCGGGTCGAGCAGCGCTACCTCGTGCTCTTGGAAAGGACTGACC
GACCACGTCCCACACACTAGAGAGCCACGGTCTGGACAGCACCATATGA
back to top

Coding sequence (CDS) from alignment at CM002460.1:576771..577119+

>rna3053 ID=rna3053|Name=rna3053|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at CM002460.1:576771..577119+ (Nannochloropsis gaditana)
ATGACAGTACAAAGGCCACTTAGAGTCGCGGCCTGCGGTGGGGGATGGAT
AACACTTTTGGCTACTGCTGCATCAATGGCTCATcccgccatcgccttct
tgcATGGCCCGCGAGCGCCATCATCATCGTGGACAGTGACCCAAAACCAT
GCTGTGCGCGATTTCTTACGGATAAGAGAGGACAATGGAAGCGAGAGCCA
CGGTCTGGACAGCACCATATGAATGACAGTACAAAGGCCACTTAGAGTCG
CGGCCTGCGGTGGGGGATGGATAACACTTTTGGCTACTGCTGCATCAATG
GCTCATcccgccatcgccttcttgcATGGCCCGCGAGCGCCATCATCATC
GTGGACAGTGACCCAAAACCATGCTGTGCGCGATTTCTTACGGATAAGAG
AGGACAATGGAAGCGAGAGCCACGGTCTGGACAGCACCATATGA
back to top
Synonyms
Publications