rna3048, rna3048 (mRNA) Nannochloropsis gaditana

Overview
Namerna3048
Unique Namerna3048
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1395
Alignment locationCM002460.1:562308..563997 +

Link to JBrowse

Properties
Property NameValue
Productabl-philin
Orig transcript idgnl|cribi|Naga_100059g27.8050.mrna
Orig protein idgnl|cribi|Naga_100059g27.8050
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:562308..563997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100059g27gene2926Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3048rna3048-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27645.1cds3040Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3048 ID=rna3048|Name=rna3048|organism=Nannochloropsis gaditana|type=mRNA|length=1395bp
CGTGAGGATGTTTGGTTTCCCAGTGTTGTTGATTGGTGGTTAGGCTGCAA
GAAGGAAGACATGAAGAAACTCTTGATCACCACACATCAGAATTATGCCT
GACCGCAGAAGCACGATCTTTCTCCTTCCTACGTTACAGCATCCTTTGCA
CAACCATGGGTGACCAACTCAGTTTGCGGGCGGAATTGAAGGGCCATGCG
GGTTGGGTGACATCGATTGCCACTCATGCCGACAACCCCAACCTCGTTCT
TTCCTCCTCGCGCGATAAGACCGTGATGGTGTGGAACTTGACCGGTGGAG
AAGACTACGGGTACCCGCAGCGAGCTTTGCGAGGTCATGGGCATTTTGTC
TCAGACGTGATAATCTCCTCTGACGGGCAGTTTGCTCTCTCGGGGTCCTG
GGATGGAACCCTGCGCTTGTGGGAAATCAAGACAGGCAAGAGCACGCGTA
CTTTCGTCGGACATTCCAAGGATGTCCTCTCTGTATCCTTCTCCCATGAC
AACCGACAGATTGTGTCCGGATCCCGGGACAAGACTATCAAGCTTTGGAA
TACACTGGGTGAGTGCAAGTTCACCATTACTGAAGGTGGCCACTCCGAGT
GGGTGTCGTGCGTGCGGTTCTCCCCCTCCCCCACGGCCCCCGTAATTGTG
TCCTGCGGCTGGGACAAGCGTGTTAAAGTCTGGAATTTGGCGGATTGCAA
GCTCAAGCAGAATTTGATCGGCCACACTGGCTACCTTAATGTGGTGACGG
TCTCACCGGACGGCTCTCTTTGTGCCTCCGGTGGGAAGGACGGCACCGCC
ATGCTCTGGGATCTGAATGAGGGCAAACGTCTCTACTCCCTGGACGCGGG
CGACATTATTCATTCGCTTGTCTTCTCGCCCAATCGCTACTGGTTGTGCG
CAGCTACGTCGCAGGGCATCAAGATCTGGGACCTGGAGTCAAAGGACATG
GTGGACCACCTGCAACCCAAGTGGCCCGTCCAGGGCAAGCACTCCCTCTC
TCCTCAGCCGTACTGCACCTCCTTAGCCTGGTCTGCGGATGGTCAGACTT
TGTTTTCAGGCTACACCGACGGAAAAATTCGTTGCTGGAGCGTGAACTAA
GAGTGAGGCGCCCCACTGCGCCAACAGGCCAGGGGCACTCTCTCTCGATT
AAGGCTTTCATTAGTTATTATATGCCCCATAAGAGAAAGAGAGAGAGTAG
GTGTGCCTGGCTGACTGCCCACAAATTTCGGATAGCCACAGGGAGGAAGG
AGGCACCGTTTAAAGTGAAAAAAGCGAAGAGAGGCGTTCTGATGACCTAG
GAATGACTTTTCCTGGGCCTATTTCTTCCATGGGATTCTCATGTCTCAAG
GTGCGAAAGAAAGAGTAGAATGCTGCGACGCTATCTATCTATTTA
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protein sequence of rna3048

>rna3048-protein ID=rna3048-protein|Name=rna3048|organism=Nannochloropsis gaditana|type=polypeptide|length=471bp
MRTSGAPAGSLPSHQPHTHPSSGAPCQWAQFKSALHSDRPFEYGYWLSVG
VSTLFDWAVRALGPCLVTLACLLIGLVTCLYFGYILPELVGCRGKSGSGV
EDPDVRYLCLARVIHGSWAAFLLFNTLFNYFHCVMTSPGSPFVNACDASM
HSHGEIQAPSVHANAGTPTDSHSPLHVSSARSDHVDARTYGFCKKCRTPR
PPRTHHCHVCKSCVLKMDHHCPWIGQCVGYYNYRYFVLFMMYLWAACVYG
ALLLGRPFLDMMYGSSQGGGPRMPVIVGSLASARSAIILTFVLAFSVGLA
LTGLLGWHVFLITTGQTTIEFYINKARRERARQRGFLYTNPHDLGSRQNW
QQVFGRDLPWWRSLLPSTRLPPAPGVGPGGPDPGQEKAGAEPREEAWWAE
EHRLSAMEEGEEEEEEEMITCDGGECAVLGEGKRGNRRRGGGAAVPAKKW
KRNGSRMIFSGVERHTPPVIV
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mRNA from alignment at CM002460.1:562308..563997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3048 ID=rna3048|Name=rna3048|organism=Nannochloropsis gaditana|type=mRNA|length=1690bp|location=Sequence derived from alignment at CM002460.1:562308..563997+ (Nannochloropsis gaditana)
CCGACCGAGGGCGCGTTCATCTGATTTATCGTTCCTGCACGTCTTCTGTC
TTTGTACCACATAGTTTAACCCTTCAACCATCAACAGGTTCATTTTCACT
TCGCTGTTGTACATGCTACGTCAAAATGCGCACGAGTGGGGCCCCAGCTG
GTTCCTTGCCTTCACATCAACCTCATACACACCCCTCCTCTGGTGCACCG
TGTCAGTGGGCACAATTTAAGTCTGCACTACATTCTGACCGGCCTTTTGA
GTATGGCTACTGGCTATCGGTTGGTGTATCTACACTTTTCGACTGGGCAG
TGCGAGCTTTGGGCCCGTGCTTGGTCACTCTTGCCTGCCTTTTGATCGGC
CTTGTCACATGTCTCTACTTTGGCTACATCCTTCCAGAGCTCGTGGGCTg
cagaggaaaaagcggcTCTGGCGTTGAGGATCCAGATGTCCGGTACTTAT
GCCTCGCACGTGTAATACACGGAAGCTGGGCAGCGTTTCTGCTGTTTAAC
ACGCTGTTCAACTATTTCCATTGCGTCATGACCTCCCCTGGTTCGCCCTT
CGTCAATGCGTGTGATGCCTCAATGCACTCCCATGGCGAAATCCAGGCTC
CGTCTGTGCATGCCAATGCAGGCACTCCCACAGATTCACATTCACCACTT
CACGTCTCCTCTGCCCGTAGCGACCATGTGGATGCACGCACGTATGGATT
CTGTAAAAAATGCCGTacaccccgccctccccgcaccCACCACTGCCACG
TCTGCAAGTCTTGTGTCCTCAAAATGGATCACCATTGCCCATGGATCGGA
CAATGTGTCGGGTACTACAACTACCGTTATTTCGTACTATTCATGATGTA
CCTGTGGGCAGCGTGCGTGTATGGCGCCCTCCTGCTCGGTCGGCCATTTT
TAGACATGATGTACGGCAGCAGTCAAGGTGGCGGGCCCCGAATGCCTGTC
ATCGTGGGGTCCCTCGCCTCTGCGCGCTCCGCTATTATCCTTACATTTGT
TTTGGCCTTCTCCGTTGGGCTGGCGCTGACAGGCTTGTTGGGTTGGCACG
TTTTTCTCATCACGACCGGGCAGACGACCATTGAATTTTACATTAATAAg
gcacggagggagcgagccCGACAACGAGGGTTTTTGTACACCAACCCTCA
CGACTTGGGGTCACGACAGAATTGGCAGCAGGTATTTGGGCGTGATTTGC
CTTGGTGGAgatctctcctcccctcgacgCGGTTGCCGCCGGCGCCCGGG
GTcgggccgggagggccggaCCCCGGACAGGAAAAGGCGGGCGCCGAgcc
gagagaggaggcatggTGGGCGGAAGAGCACCGGCTGTcagcgatggagg
agggggaagaggaagaggaggaggaaatgataACGTGTGACGGCGGAGAG
TGTGCAGTTcttggagaagggaagagggggaacagaaggagaggaggggg
ggcggccgtTCCTGCGAAAAAATGGAAGCGGAATGGGAGTCGCATGATTT
TTTCGGGTGTAGAACGTCACACCCCTCCGGTGATTGTCTAGCACCCCTGA
AAGTGTACGTTTAAAAGACTTGAGATGCGAGATAGAAGGCAGGCAGCGTG
CGGCACACGGACGGCCCACATGACTGACCTTCGGCATCGCTTTCAGCAGA
CATGTGAAAGTTCCAAGCCAGCTATAGATCCTTTTTGcac
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Coding sequence (CDS) from alignment at CM002460.1:562308..563997+

>rna3048 ID=rna3048|Name=rna3048|organism=Nannochloropsis gaditana|type=CDS|length=1416bp|location=Sequence derived from alignment at CM002460.1:562308..563997+ (Nannochloropsis gaditana)
ATGCGCACGAGTGGGGCCCCAGCTGGTTCCTTGCCTTCACATCAACCTCA
TACACACCCCTCCTCTGGTGCACCGTGTCAGTGGGCACAATTTAAGTCTG
CACTACATTCTGACCGGCCTTTTGAGTATGGCTACTGGCTATCGGTTGGT
GTATCTACACTTTTCGACTGGGCAGTGCGAGCTTTGGGCCCGTGCTTGGT
CACTCTTGCCTGCCTTTTGATCGGCCTTGTCACATGTCTCTACTTTGGCT
ACATCCTTCCAGAGCTCGTGGGCTgcagaggaaaaagcggcTCTGGCGTT
GAGGATCCAGATGTCCGGTACTTATGCCTCGCACGTGTAATACACGGAAG
CTGGGCAGCGTTTCTGCTGTTTAACACGCTGTTCAACTATTTCCATTGCG
TCATGACCTCCCCTGGTTCGCCCTTCGTCAATGCGTGTGATGCCTCAATG
CACTCCCATGGCGAAATCCAGGCTCCGTCTGTGCATGCCAATGCAGGCAC
TCCCACAGATTCACATTCACCACTTCACGTCTCCTCTGCCCGTAGCGACC
ATGTGGATGCACGCACGTATGGATTCTGTAAAAAATGCCGTacaccccgc
cctccccgcaccCACCACTGCCACGTCTGCAAGTCTTGTGTCCTCAAAAT
GGATCACCATTGCCCATGGATCGGACAATGTGTCGGGTACTACAACTACC
GTTATTTCGTACTATTCATGATGTACCTGTGGGCAGCGTGCGTGTATGGC
GCCCTCCTGCTCGGTCGGCCATTTTTAGACATGATGTACGGCAGCAGTCA
AGGTGGCGGGCCCCGAATGCCTGTCATCGTGGGGTCCCTCGCCTCTGCGC
GCTCCGCTATTATCCTTACATTTGTTTTGGCCTTCTCCGTTGGGCTGGCG
CTGACAGGCTTGTTGGGTTGGCACGTTTTTCTCATCACGACCGGGCAGAC
GACCATTGAATTTTACATTAATAAggcacggagggagcgagccCGACAAC
GAGGGTTTTTGTACACCAACCCTCACGACTTGGGGTCACGACAGAATTGG
CAGCAGGTATTTGGGCGTGATTTGCCTTGGTGGAgatctctcctcccctc
gacgCGGTTGCCGCCGGCGCCCGGGGTcgggccgggagggccggaCCCCG
GACAGGAAAAGGCGGGCGCCGAgccgagagaggaggcatggTGGGCGGAA
GAGCACCGGCTGTcagcgatggaggagggggaagaggaagaggaggagga
aatgataACGTGTGACGGCGGAGAGTGTGCAGTTcttggagaagggaaga
gggggaacagaaggagaggagggggggcggccgtTCCTGCGAAAAAATGG
AAGCGGAATGGGAGTCGCATGATTTTTTCGGGTGTAGAACGTCACACCCC
TCCGGTGATTGTCTAG
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Synonyms
Publications