rna3047, rna3047 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3047
Unique Name	rna3047
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	387
Alignment location	CM002460.1:560653..562047 -

Link to JBrowse

Properties


Property Name	Value
Product	guanine nucleotide binding protein
Orig transcript id	gnl\|cribi\|Naga_100059g26.8048.mrna
Orig protein id	gnl\|cribi\|Naga_100059g26.8048
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:560653..562047 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100059g26	gene2925	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27643.1	cds3039	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3047	rna3047-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:560653..562047-
coding sequence from alignment at CM002460.1:560653..562047-

mRNA sequence

>rna3047 ID=rna3047|Name=rna3047|organism=Nannochloropsis gaditana|type=mRNA|length=387bp
CAGAAGCCCGTGCACCCGAGCCATCCCAGGGCAATATCTTTGGTCTCGAA
ATGCCTCCTCCGTGTCCCATTTCCCTTTTATCTGTGAATATCATGCCAAA
GTCTCCACGAGAGTGCGCTTCTGAATTGAATGTTGGGAATGGGCCCGGTG
TTGCGTTCATAAAGGATGACAGAAAAGACGCATGTTGGGAACTACTGCCG
CTGAAGGACACGGACTCTCAACGAGTAGTAGGACTCCGTGCCGTTATCGT
CGACTCCCCTTTCCTTTCACCTTTTTCCGGGGAAGGTTATGAATCATCGG
AAGCATCGCAGATCGAACTCTGGCATTCGAGCATGAACGTGGCCTGACAT
GACTAAATCTACTTTCTGTGGAGGCATGCCCCACTCA

protein sequence of rna3047

>rna3047-protein ID=rna3047-protein|Name=rna3047|organism=Nannochloropsis gaditana|type=polypeptide|length=314bp
MGDQLSLRAELKGHAGWVTSIATHADNPNLVLSSSRDKTVMVWNLTGGED
YGYPQRALRGHGHFVSDVIISSDGQFALSGSWDGTLRLWEIKTGKSTRTF
VGHSKDVLSVSFSHDNRQIVSGSRDKTIKLWNTLGECKFTITEGGHSEWV
SCVRFSPSPTAPVIVSCGWDKRVKVWNLADCKLKQNLIGHTGYLNVVTVS
PDGSLCASGGKDGTAMLWDLNEGKRLYSLDAGDIIHSLVFSPNRYWLCAA
TSQGIKIWDLESKDMVDHLQPKWPVQGKHSLSPQPYCTSLAWSADGQTLF
SGYTDGKIRCWSVN

mRNA from alignment at CM002460.1:560653..562047-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3047 ID=rna3047|Name=rna3047|organism=Nannochloropsis gaditana|type=mRNA|length=1395bp|location=Sequence derived from alignment at CM002460.1:560653..562047- (Nannochloropsis gaditana)
CGTGAGGATGTTTGGTTTCCCAGTGTTGTTGATTGGTGGTTAGGCTGCAA
GAAGGAAGACATGAAGAAACTCTTGATCACCACACATCAGAATTATGCCT
GACCGCAGAAGCACGATCTTTCTCCTTCCTACGTTACAGCATCCTTTGCA
CAACCATGGGTGACCAACTCAGTTTGCGGGCGGAATTGAAGGGCCATGCG
GGTTGGGTGACATCGATTGCCACTCATGCCGACAACCCCAACCTCGTTCT
TTCCTCCTCGCGCGATAAGACCGTGATGGTGTGGAACTTGACCGGTGGAG
AAGACTACGGGTACCCGCAGCGAGCTTTGCGAGGTCATGGGCATTTTGTC
TCAGACGTGATAATCTCCTCTGACGGGCAGTTTGCTCTCTCGGGGTCCTG
GGATGGAACCCTGCGCTTGTGGGAAATCAAGACAGGCAAGAGCACGCGTA
CTTTCGTCGGACATTCCAAGGATGTCCTCTCTGTATCCTTCTCCCATGAC
AACCGACAGATTGTGTCCGGATCCCGGGACAAGACTATCAAGCTTTGGAA
TACACTGGGTGAGTGCAAGTTCACCATTACTGAAGGTGGCCACTCCGAGT
GGGTGTCGTGCGTGCGGTTCTCCCCCTCCCCCACGGCCCCCGTAATTGTG
TCCTGCGGCTGGGACAAGCGTGTTAAAGTCTGGAATTTGGCGGATTGCAA
GCTCAAGCAGAATTTGATCGGCCACACTGGCTACCTTAATGTGGTGACGG
TCTCACCGGACGGCTCTCTTTGTGCCTCCGGTGGGAAGGACGGCACCGCC
ATGCTCTGGGATCTGAATGAGGGCAAACGTCTCTACTCCCTGGACGCGGG
CGACATTATTCATTCGCTTGTCTTCTCGCCCAATCGCTACTGGTTGTGCG
CAGCTACGTCGCAGGGCATCAAGATCTGGGACCTGGAGTCAAAGGACATG
GTGGACCACCTGCAACCCAAGTGGCCCGTCCAGGGCAAGCACTCCCTCTC
TCCTCAGCCGTACTGCACCTCCTTAGCCTGGTCTGCGGATGGTCAGACTT
TGTTTTCAGGCTACACCGACGGAAAAATTCGTTGCTGGAGCGTGAACTAA
GAGTGAGGCGCCCCACTGCGCCAACAGGCCAGGGGCACTCTCTCTCGATT
AAGGCTTTCATTAGTTATTATATGCCCCATAAGAGAAAGAGAGAGAGTAG
GTGTGCCTGGCTGACTGCCCACAAATTTCGGATAGCCACAGGGAGGAAGG
AGGCACCGTTTAAAGTGAAAAAAGCGAAGAGAGGCGTTCTGATGACCTAG
GAATGACTTTTCCTGGGCCTATTTCTTCCATGGGATTCTCATGTCTCAAG
GTGCGAAAGAAAGAGTAGAATGCTGCGACGCTATCTATCTATTTA

Coding sequence (CDS) from alignment at CM002460.1:560653..562047-

>rna3047 ID=rna3047|Name=rna3047|organism=Nannochloropsis gaditana|type=CDS|length=945bp|location=Sequence derived from alignment at CM002460.1:560653..562047- (Nannochloropsis gaditana)
ATGGGTGACCAACTCAGTTTGCGGGCGGAATTGAAGGGCCATGCGGGTTG
GGTGACATCGATTGCCACTCATGCCGACAACCCCAACCTCGTTCTTTCCT
CCTCGCGCGATAAGACCGTGATGGTGTGGAACTTGACCGGTGGAGAAGAC
TACGGGTACCCGCAGCGAGCTTTGCGAGGTCATGGGCATTTTGTCTCAGA
CGTGATAATCTCCTCTGACGGGCAGTTTGCTCTCTCGGGGTCCTGGGATG
GAACCCTGCGCTTGTGGGAAATCAAGACAGGCAAGAGCACGCGTACTTTC
GTCGGACATTCCAAGGATGTCCTCTCTGTATCCTTCTCCCATGACAACCG
ACAGATTGTGTCCGGATCCCGGGACAAGACTATCAAGCTTTGGAATACAC
TGGGTGAGTGCAAGTTCACCATTACTGAAGGTGGCCACTCCGAGTGGGTG
TCGTGCGTGCGGTTCTCCCCCTCCCCCACGGCCCCCGTAATTGTGTCCTG
CGGCTGGGACAAGCGTGTTAAAGTCTGGAATTTGGCGGATTGCAAGCTCA
AGCAGAATTTGATCGGCCACACTGGCTACCTTAATGTGGTGACGGTCTCA
CCGGACGGCTCTCTTTGTGCCTCCGGTGGGAAGGACGGCACCGCCATGCT
CTGGGATCTGAATGAGGGCAAACGTCTCTACTCCCTGGACGCGGGCGACA
TTATTCATTCGCTTGTCTTCTCGCCCAATCGCTACTGGTTGTGCGCAGCT
ACGTCGCAGGGCATCAAGATCTGGGACCTGGAGTCAAAGGACATGGTGGA
CCACCTGCAACCCAAGTGGCCCGTCCAGGGCAAGCACTCCCTCTCTCCTC
AGCCGTACTGCACCTCCTTAGCCTGGTCTGCGGATGGTCAGACTTTGTTT
TCAGGCTACACCGACGGAAAAATTCGTTGCTGGAGCGTGAACTAA

Synonyms

Publications