rna3046, rna3046 (mRNA) Nannochloropsis gaditana

Overview
Namerna3046
Unique Namerna3046
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2052
Alignment locationCM002460.1:560219..560605 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100059g25.8039.mrna
Orig protein idgnl|cribi|Naga_100059g25.8039
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:560219..560605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100059g25gene2924Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3046rna3046-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27634.1cds3038Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3046 ID=rna3046|Name=rna3046|organism=Nannochloropsis gaditana|type=mRNA|length=2052bp
ATGGCGCGACCTAAGAAAGGGTATATGGATGAGGAGGAGGGCAGCACGAC
GGGGCGATGGACGACAGAGGAGCACGCGCTCTTCGAGGATGGATTACGAA
AATATGGCAAGCAATGGAAACGCATAGCCGAAGAGATTCCTTCGCGCACG
GTTGTCCAGATTCGGACGCACGCCCAGAAATATTTCCTGAAGCTGGCCAA
AATTGAGCCTGCCACCAGCACATCCATCGCGCTGAAACCTCCGACCAATC
ACAACCAGTTTTACCCGCACGTGCATGCACACAATCATGGCTTGCATTCT
AATGCCGCGTTCACATCCTTGACTGGTTATCCTTCGAATGGAAATGGCAA
CGTGGGCCCCGACATGGAACTATCAGGGCAAGGCTCAAGTATGGACCTTC
CACTCTCCTTGACCCGCAAAAAGCGCTCGGTGGGGAAGAGCACATACCGG
CGACTGGTACCAGGCTTGGACGGGGATGAGATGGAGGAGGAAATTGGCTG
TTTCGAGGCAGATAAGTTGGAAAAAGAAGGGGACGGCATCAACGAGGAGG
ACGAGGGCTGCCCCTTTCGCAGTTCAACCCTGACCTCCCGGGGCCGCGTG
TCGCGCCCTCCTCGCAATAAATCTACCTTCCCTTCTCATCCTTCCAGCCC
CGCGGGCATAGGGATGAGGGGTGAGGGTTTTGGAAGTGGCATCGACACAA
GCCACACCACCTTGGAAGGTATCCCTCAGAACGGTGCCAGTGCGCGGGCA
GTGGGCACCGCCTTGAGAAAGCAGCAGAAGCAGCGGGCTCGTCGAACTGC
TCCCTTGGAGCAGAATGGGCTGAGGGGCAGTGGCTCCGTCTTCTCTTCGG
CCTCCTCGCTGACTCATTCCATTTGGGGGGCTTTGCACACGAGCTCCACC
GACCCGACCCCCTCCTCCCTCCAGTCTCTTCCCCCCCGCGGGCTCATGAA
CGCGGAGGACAGCGGCTGCAGACCTGGGGCAGGTGTGGGACCTGCGGGAG
GGCTGATGGTCCGGATTCCCATGGGCGAGGAGCACGCGCTGGACATGGAG
GACAACCTGTTCGCGGCGGGGGAACTGAATGGATTGTTCGAGTCCCTGCG
AGAGGGGGCCCTGGTGGGGGCTCCGACGCAGACGCCGACGTCCGTCATGC
ATCTCTACCCGGACATGGACGATTTTCCCGACGCAATGGGGGCGCATGTC
CATGGGCCCGAGGAGGACGGAAAGGGGGAGGGGAAGCGGGAGCGGGTGGG
AGGGGCCAACGAAGCCCTGCCTGGATCTGACCGTCCGGACTACATGCTCG
GCGTCCCTGGTAGCCTGCAGTCTACAGGATGCTGCGGGTCCTCCACGACC
TCGGCGTCCTCCGGCGTGGCGGGAACGACCGAGGGGGAGGAGGAGGAGGA
GGAGGAGGCCTTGGGCGAGGGGGAGGACGCGTTCTCCCATCTGCACGAGC
TGGCGGGGCGCGGGGCGCCAGACTGGGCGGACGCGTTCGAGGAGGCTTTG
GGGGCCTTGGAAGGGGCGGAGGGCGTAGGCGAAGAAGGGGCGCTGGGCCT
GCATGCTCTGCAGCAGAGCGAGCGGCTGGAGCCCATGGGGCGGGAGGCGT
CGAGCAACAGCCTGACCGACTCCTCCAACACGGACACCTATCTGCCCTCG
GACGAGAGCGACGGGGAGCAGGCGGGGGCCAGGCCTCACCTGGGCTCTCA
CCTGGTGCGTGGTCTGGAGGACTGCGGGGTTGAGAATGGGCCGGTGGGAA
AGCGAGCGCGCCTGAGCTACGGCTACGGGCAGGAAGGGGGGGAGGGTTTT
ACCTCCTCCCTCCACACGAGGGGGACCTCGATGGCGCCCTCCTTGGTGAA
GGAGCAGGCGTGGAAGGGGGAGGAAGGGGAGAAGAAGCGAGGGGAGGCGG
CGGGTGGGGAGGAAGAGGAAGAGGACTACGGGTATTTCACGACCACGGAA
GAGGATTTGGACCATTTCCTCGTGAACATTTTGGACGGCGTGACCGTTAC
TTCAACGGCCGGTTCAGCGACAGTCGGGAGCGTGGGTGTTGCGCCCGTTT
GA
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protein sequence of rna3046

>rna3046-protein ID=rna3046-protein|Name=rna3046|organism=Nannochloropsis gaditana|type=polypeptide|length=98bp
MPPPCPISLLSVNIMPKSPRECASELNVGNGPGVAFIKDDRKDACWELLP
LKDTDSQRVVGLRAVIVDSPFLSPFSGEGYESSEASQIELWHSSMNVA
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mRNA from alignment at CM002460.1:560219..560605+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3046 ID=rna3046|Name=rna3046|organism=Nannochloropsis gaditana|type=mRNA|length=387bp|location=Sequence derived from alignment at CM002460.1:560219..560605+ (Nannochloropsis gaditana)
cagAAGCCCGTGCACCCGAGCCATCCCAGGGCAATATCTTTGGTCTCGAA
atgcctcctccgtgtcccaTTTCCCTTTTATCTGTGAATATCATGCCAAA
GTCTCCACGAGAGTGCGCTTCTGAATTGAATGTTGGGAATGGGCCCGGTG
TTGCGTTCATAAAGGATGACAGAAAAGACGCATGTTGGGAACTACTGCCG
CTGAAGGACACGGACTCTCAACGAGTAGTAGGACTCCGTGCCGTTATCGT
CgactcccctttcctttcacctTTTTCCGGGGAAGGTTATGAATCATCGG
AAGCATCGCAGATCGAACTCTGGCATTCGAGCATGAACGTGGCCTGACAT
GACTAAATCTACTTTCTGTGGAGGCATGCCCCActca
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Coding sequence (CDS) from alignment at CM002460.1:560219..560605+

>rna3046 ID=rna3046|Name=rna3046|organism=Nannochloropsis gaditana|type=CDS|length=297bp|location=Sequence derived from alignment at CM002460.1:560219..560605+ (Nannochloropsis gaditana)
atgcctcctccgtgtcccaTTTCCCTTTTATCTGTGAATATCATGCCAAA
GTCTCCACGAGAGTGCGCTTCTGAATTGAATGTTGGGAATGGGCCCGGTG
TTGCGTTCATAAAGGATGACAGAAAAGACGCATGTTGGGAACTACTGCCG
CTGAAGGACACGGACTCTCAACGAGTAGTAGGACTCCGTGCCGTTATCGT
CgactcccctttcctttcacctTTTTCCGGGGAAGGTTATGAATCATCGG
AAGCATCGCAGATCGAACTCTGGCATTCGAGCATGAACGTGGCCTGA
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Synonyms
Publications