rna304, rna304 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna304
Unique Name	rna304
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2106
Alignment location	CM002455.1:753435..755909 +

Link to JBrowse

Properties


Property Name	Value
Product	glucosamine-6-phosphate isomerase
Orig transcript id	gnl\|cribi\|Naga_100026g11.10640.mrna
Orig protein id	gnl\|cribi\|Naga_100026g11.10640
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:753435..755909 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g11	gene293	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna304	rna304-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30386.1	cds304	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:753435..755909+
coding sequence from alignment at CM002455.1:753435..755909+

mRNA sequence

>rna304 ID=rna304|Name=rna304|organism=Nannochloropsis gaditana|type=mRNA|length=2106bp
ATGGACGAGCCTTCGATACCCACGTCCTCGGTCAATCACGATGGATTCTC
CTCGCGAGCTGCGAAGGCTCAGGTGTCGAGAAGCCAAGATTGCTTTGCAG
AAGGGTCGCAAGAGGAGGAGTCATGTAGTGGGATAAGAAGCCATCCATGC
TCAAGACCTGCGGAGCAGATTGATGCAAGTGCACCCTTGTCATCCTCGAC
TATGAAAAGCGAGCGTGTCAGGTACAGTGCACCCCAATTGTGGCACAGAA
GCTCGAGGCACCGCACACCTCCCTCGGCGGGCTCGGCATCATCCGCAAGA
CGCCTCGAGGAGCTCAAGCCGGAGGAGCAAGTATTGCGGTTGCGCGCATC
GGAAATATCGGCACTGGCAGGCCTCCATCCTTTCAAAGACGTACTGGAGC
TATTAGACCGACACATCTATCAGGATTTGCCTCACCTGCAAGCGGAAGAT
TGCGCGTCGTGCGGGCTGGTGTTGATGACGAAGGAGGAAGAATTCGAGGA
GCTGGTTGGGCTAGCGGGTCCAGAGGCTGCTTTGCTCCGCCAAGTGCACT
CAAACAGTTTTTCGGCCGCTGTGCAGACCACACAAGACGTGGATAGACGC
AGAAGCGATATAACGGATGTGCTGGAGCGAGTGGCCGCACGAGGGCGAGT
TGGCGCGGAGGAGGTGACGCTCTTGCGAAATCATATGACTTACTCCCTGG
CCACAGAATACGGCAAGCGGCACGAAGATGCGGGCATTAAGCAGTACGAG
GCCACCCATGGCGTCCAAGTCCACAGTCAGAACGACACTTTGCTGGCATG
GACGTTCCCTCGAGACCCCACTGCCGTCTCCTGGGACAAGCCCCCTCCTC
TGCAGGTCACGCCCCTGAGACCCGAGGCGATGGCGCGCGCGCGCGGTGCC
CCCGGCGAGTCAGAGGGTGAGATGCCTGGGAATGGGGAGGCAGGGGGCTC
GGATGGAGCAGCTCGTGTCTCGCCTGGACAGGAGAGCCCTCTCGGAACCG
ATGGCTGCGCGCCGCTTGGAGTCCCCAATGGGCGCTTGGAGGCGCTCGTT
TCGGTCCCAGGTGTGTGCCAAGGGCGCGCAAGGAGCCTGCGGGGCCCTGA
CGCCTGGTTTCGCGTGTGTGGGGTGATGGACGGCCTCACGGAGGCGCTGG
ACGCGAGCGATGACGACCCGGCCGCGTGGAGGCTCAGGACGACGGTGGTA
GAGGTCAAGCACCGCGTCGCCCCCGCGAACGTCCAGGACCCCCCGCCCTT
CCACGACACCCTCCAGCTCCTCACCTACATGCTCATGCTCGACGGGGCCC
GGGGCGGGGGGGGCTCCACGTGGGGGGACTTGGTGCAGGTCGCGCGAGGG
CAGTGGAGCGGCAGGGGGGGGTCGCAGTCTTGTGGACCAAGGACGGACGA
TGAGGAGGCGACGGTTACGGCGACCACCCGCATCACTCTGAAGGGGGGAC
AGCTCGAGCATGGGAAGCTCTACTTTGCCCATGTGGTGCCGCGTCTTTAT
GCCTATTCTGATCTGGTTTACGCTCTCCGGAATGATGCTGACGCTCGCAG
GGCTTTCCTACTTTCTGATGAAGATGCCAAGTGGGATTTGGTATACCGAC
GTTTGCCATTCCTTCCCGCTTTTCGTCCTCAATTTAATTACGATCCAAAG
AAAATATCGAACAATTCAATTCCTGCAAAATCTGACATTAAGAGGCGTGT
TCAAACGACGAAAGGGAATGGAAACACAGCAACAACAACGGCCTCAAGGC
CAGATAACTCTTCATCACTTTTACGAGCTACGGAGCCAGAGGGGCGTGGT
CACGCGCAGTGCCGACAAGAGACACAAGCCATCGCCGATGACATAGTGTC
ATGGAGTTTTTACCGGCAATCCTATAGGGCTGCAGACAGTAAGGCTTCAG
AACTGGGAGATTTATCGAAAGATGGTAAGATACAACCCAAGCTTGAACAT
TTTCACAGGAAACAATATCCCAAAGTTGTACAGGTTACAGAGCACAGGAT
TTATGCGAAGGTGCATGCATGTAAACAGAAGAAATATAATTCAGTGTGTG
AGTCTCTCGACGGGAAGGTCCTGACATCGTGGGCGGTATGGGCCGAGACC
GGGTGA

protein sequence of rna304

>rna304-protein ID=rna304-protein|Name=rna304|organism=Nannochloropsis gaditana|type=polypeptide|length=824bp
MHFSKMQGQPNLTPVEQEFVRESQRQKHYASEHIPGVIEVANVAALGKLV
SLRFLEWVSEHPAGVVSLPTGRTPEMFIAYLKHFRQNWKESSTQVELKLY
GLGGLACFPDTSQLKFVQLDEFFPMHPDHKTSFTHYVRNLYFPLLDLKPE
NILTMDFVSAGVLPDDHNACASIFENGIVNVDLLRPAMADEEVEKRDEDR
NDRWNAATDDKAVKDKKYDVQVAILAKAHSFAKKYEAQVRAWGGIGFWVG
GIGPDGHIAFNMPGSSHNSQTRIVTLNYPTAAAASGDLGGIEFSRHKAAL
TIGLDTITFNKDAALIVMAAGEGKARVVAEAIESQPSTEIPATCLQSHPG
ARFYVSSGAASLLKERRTETLHRKIMERSLLDTDVDSTLVDLALRLNKRL
VDLSEEDVGQDSRGALFLRPSTRKGPHASLQTLVEGTVRRLEGKISRGTV
LARGRRILHTAPHHDDIMLSYHAALPDLMATNTHRFAYLTSGFHAVTNGY
MLSILRPPHEDAAFLRERASLIFETPYPRVVEAFVAAHRERSTCLEAELE
SVLCLRQMSAIWEVTKVEALQQEVAGVVAFLTQQLPGDKSPVKIQLLKGA
MRETEADRMWALRGVDPSQVKHLRSAFYTDDFFTPLPTIEEDAMPMVRML
EDFKPDIVTVAFDPEGTGPDTHYKVLQVVAQATRMYESADEMESVARSPS
GLTVWGYRNVWFRFHMAEATVMAPVNDAGLAEMNDAFLTCFSTQKSASFP
APDYDGPFSHWSEASQRAQRQQLGVVLGEDFFVTHPDASVRASSGYVFLK
EMDRDAFSKTATQLRGRMESDRGM

mRNA from alignment at CM002455.1:753435..755909+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna304 ID=rna304|Name=rna304|organism=Nannochloropsis gaditana|type=mRNA|length=2475bp|location=Sequence derived from alignment at CM002455.1:753435..755909+ (Nannochloropsis gaditana)
ATGCACTTCTCAAAGATGCAAGGCCAACCAAACCTCACTCCAGTGGAGCA
GGAATTCGTCCGAGAAAGCCAGCGTCAAAAACATTACGCTAGCGAGCATA
TACCAGGCGTGATTGAGGTAGCAAATGTGGCAGCTTTGGGGAAGCTCGTT
TCGCTTCGCTTCCTGGAGTGGGTATCTGAGCACCCTGCAGGAGTTGTGTC
TCTCCCGACAGGTCGCACGCCCGAGATGTTCATAGCTTACCTCAAGCACT
TCCGTCAAAATTGGAAAGAGTCCAGTACCCAAGTAGAGCTAAAGCTATAT
GGTTTGGGCGGTCTGGCCTGCTTCCCTGACACGTCACAGCTCAAGTTCGT
TCAGCTTGACGAGTTCTTCCCAATGCACCCTGACCACAAGACCTCATTCA
CGCACTACGTCCGCAACCTCTACTTCCCTTTGCTAGATTTAAAACCTGAA
AATATATTGACGATGGATTTCGTCAGCGCTGGAGTCCTTCCAGACGACCA
CAATGCATGCGCCTCGATTTTCGAGAATGGCATTGTCAATGTCGATTTGT
TGAGACCCGCGATGGCCGATGAAGAAGTAGAGAAAAGAGACGAAGACAGG
AATGACCGATGGAATGCCGCCACAGATGACAAAGCGGTAAAGGACAAAAA
GTACGATGTTCAAGTCGCCATACTAGCCAAAGCCCATTCTTTCGCGAAGA
AATACGAAGCTCAGGTTCGGGCTTGGGGTGGGATTGGGTTTTGGGTGGGG
GGAATCGGGCCAGACGGCCACATAGCCTTCAATATGCCGGGATCATCACA
CAACAGTCAGACCAGGATCGTGACACTAAATTACCCTACTGCCGCAGCCG
CTTCCGGCGATCTAGGTGGCATTGAGTTCTCGCGCCACAAAGCCGCTCTT
ACTATCGGGCTGGACACCATCACTTTCAATAAGGATGCGGCCCTAATTGT
CATGGCCGCCGGAGAAGGCAAGGCCCGCGTGGTAGCTGAGGCCATTGAGA
GCCAGCCATCCACGGAGATCCCAGCCACGTGCCTACAATCCCATCCGGGT
GCGCGTTTCTATGTTTCCTCAGGGGCAGCAAGCCTTTTGAAGGAGCGTCG
CACCGAGACCCTACATCGAAAGATCATGGAGCGGTCGTTGCTGGACACAG
ATGTCGATTCAACTTTAGTAGACCTTGCCTTGCGGCTGAACAAGCGGCTC
GTAGAtctgagcgaggaggacgttggGCAAGATTCCCGTGGCGCCTTGTT
CCTGAGGCCATCGACAAGGAAAGGACCGCACGCCTCGCTTCAGACTCTCG
TAGAAGGAACAGTCCGCCGCCTTGAAGGCAAAATTTCGCGCGGTACGGTT
CTGGCGCGAGGGCGGCGAATCCTACACACCGCCCCGCACCACGACGACAT
CATGCTCTCCTACCACGCGGCACTCCCCGACCTGATGGCCACCAACACTC
ACCGATTCGCCTACCTGACGTCCGGGTTCCACGCCGTGACCAACGGCTAC
ATGCTTTCCATACTCCGACCTCCGCACGAGGacgccgctttcctccgtgA
GAGAGCCAGCCTCATCTTCGAGACTCCCTACCCTCGGGTCGTGGAGGCCT
TTGTGGCTGCACACCGGGAGCGGAGCACTTGCTTGGAGGCCGAGCTGGAA
TCCGTGCTGTGCCTTCGACAGATGTCTGCCATCTGGGAGGTGACAAAAGT
CGAGGCCCTGCAGCAAGAAGTCGCCGGAGTGGTCGCCTTCTTGACCCAGC
AGCTCCCGGGGGACAAGAGCCCCGTCAAAATTCAGCTTCTCAAGGGCGCT
ATGCGCGAGACCGAGGCTGACCGCATGTGGGCATTGCGAGGTGTTGATCC
CTCCCAGGTCAAACACCTCCGCTCCGCCTTCTACACTGACGACTTCTTTA
CCCCGCTACCAACCATTGAGGAGGACGCCATGCCGATGGTGAGGATGCTG
GAAGACTTCAAGCCGGACATCGTCACAGTCGCCTTCGACCCCGAGGGAAC
GGGGCCAGACACGCACTACAAAGTCCTTCAAGTAGTCGCACAGGCGACAC
GCATGTACGAAAGCGCGGATGAAATGGAATCGGTCGCGCGTAGCCCGTCG
GGCCTGACCGTCTGGGGGTATCGTAATGTCTGGTTTCGATTCCACATGGC
GGAGGCCACCGTGATGGCTCCTGTCAACGACGCAGGTCTAGCAGAGATGA
ATGACGCGTTTCTCACATGCTTCTCCACCCAGAAATCTGCCTCCTTTCCG
GCCCCGGACTACGACGGGCCGTTCTCGCATTGGTCCGAGGCGTCTCAGCG
GGCACAACGGCAGCAGCTAGGCGTGGTCTTGGGGGAGGACTTTTTTGTCA
CTCACCCCGACGCAAGTGTGCGGGCTTCCAGCGGATACGTCTTCCTGAAG
GAAATGGATCGCGACGCCTTTTCCAAGACGGCTACGCAACTCCGTGGGCG
CATGGAATCTGACAGGGGCAtgtga

Coding sequence (CDS) from alignment at CM002455.1:753435..755909+

>rna304 ID=rna304|Name=rna304|organism=Nannochloropsis gaditana|type=CDS|length=2475bp|location=Sequence derived from alignment at CM002455.1:753435..755909+ (Nannochloropsis gaditana)
ATGCACTTCTCAAAGATGCAAGGCCAACCAAACCTCACTCCAGTGGAGCA
GGAATTCGTCCGAGAAAGCCAGCGTCAAAAACATTACGCTAGCGAGCATA
TACCAGGCGTGATTGAGGTAGCAAATGTGGCAGCTTTGGGGAAGCTCGTT
TCGCTTCGCTTCCTGGAGTGGGTATCTGAGCACCCTGCAGGAGTTGTGTC
TCTCCCGACAGGTCGCACGCCCGAGATGTTCATAGCTTACCTCAAGCACT
TCCGTCAAAATTGGAAAGAGTCCAGTACCCAAGTAGAGCTAAAGCTATAT
GGTTTGGGCGGTCTGGCCTGCTTCCCTGACACGTCACAGCTCAAGTTCGT
TCAGCTTGACGAGTTCTTCCCAATGCACCCTGACCACAAGACCTCATTCA
CGCACTACGTCCGCAACCTCTACTTCCCTTTGCTAGATTTAAAACCTGAA
AATATATTGACGATGGATTTCGTCAGCGCTGGAGTCCTTCCAGACGACCA
CAATGCATGCGCCTCGATTTTCGAGAATGGCATTGTCAATGTCGATTTGT
TGAGACCCGCGATGGCCGATGAAGAAGTAGAGAAAAGAGACGAAGACAGG
AATGACCGATGGAATGCCGCCACAGATGACAAAGCGGTAAAGGACAAAAA
GTACGATGTTCAAGTCGCCATACTAGCCAAAGCCCATTCTTTCGCGAAGA
AATACGAAGCTCAGGTTCGGGCTTGGGGTGGGATTGGGTTTTGGGTGGGG
GGAATCGGGCCAGACGGCCACATAGCCTTCAATATGCCGGGATCATCACA
CAACAGTCAGACCAGGATCGTGACACTAAATTACCCTACTGCCGCAGCCG
CTTCCGGCGATCTAGGTGGCATTGAGTTCTCGCGCCACAAAGCCGCTCTT
ACTATCGGGCTGGACACCATCACTTTCAATAAGGATGCGGCCCTAATTGT
CATGGCCGCCGGAGAAGGCAAGGCCCGCGTGGTAGCTGAGGCCATTGAGA
GCCAGCCATCCACGGAGATCCCAGCCACGTGCCTACAATCCCATCCGGGT
GCGCGTTTCTATGTTTCCTCAGGGGCAGCAAGCCTTTTGAAGGAGCGTCG
CACCGAGACCCTACATCGAAAGATCATGGAGCGGTCGTTGCTGGACACAG
ATGTCGATTCAACTTTAGTAGACCTTGCCTTGCGGCTGAACAAGCGGCTC
GTAGAtctgagcgaggaggacgttggGCAAGATTCCCGTGGCGCCTTGTT
CCTGAGGCCATCGACAAGGAAAGGACCGCACGCCTCGCTTCAGACTCTCG
TAGAAGGAACAGTCCGCCGCCTTGAAGGCAAAATTTCGCGCGGTACGGTT
CTGGCGCGAGGGCGGCGAATCCTACACACCGCCCCGCACCACGACGACAT
CATGCTCTCCTACCACGCGGCACTCCCCGACCTGATGGCCACCAACACTC
ACCGATTCGCCTACCTGACGTCCGGGTTCCACGCCGTGACCAACGGCTAC
ATGCTTTCCATACTCCGACCTCCGCACGAGGacgccgctttcctccgtgA
GAGAGCCAGCCTCATCTTCGAGACTCCCTACCCTCGGGTCGTGGAGGCCT
TTGTGGCTGCACACCGGGAGCGGAGCACTTGCTTGGAGGCCGAGCTGGAA
TCCGTGCTGTGCCTTCGACAGATGTCTGCCATCTGGGAGGTGACAAAAGT
CGAGGCCCTGCAGCAAGAAGTCGCCGGAGTGGTCGCCTTCTTGACCCAGC
AGCTCCCGGGGGACAAGAGCCCCGTCAAAATTCAGCTTCTCAAGGGCGCT
ATGCGCGAGACCGAGGCTGACCGCATGTGGGCATTGCGAGGTGTTGATCC
CTCCCAGGTCAAACACCTCCGCTCCGCCTTCTACACTGACGACTTCTTTA
CCCCGCTACCAACCATTGAGGAGGACGCCATGCCGATGGTGAGGATGCTG
GAAGACTTCAAGCCGGACATCGTCACAGTCGCCTTCGACCCCGAGGGAAC
GGGGCCAGACACGCACTACAAAGTCCTTCAAGTAGTCGCACAGGCGACAC
GCATGTACGAAAGCGCGGATGAAATGGAATCGGTCGCGCGTAGCCCGTCG
GGCCTGACCGTCTGGGGGTATCGTAATGTCTGGTTTCGATTCCACATGGC
GGAGGCCACCGTGATGGCTCCTGTCAACGACGCAGGTCTAGCAGAGATGA
ATGACGCGTTTCTCACATGCTTCTCCACCCAGAAATCTGCCTCCTTTCCG
GCCCCGGACTACGACGGGCCGTTCTCGCATTGGTCCGAGGCGTCTCAGCG
GGCACAACGGCAGCAGCTAGGCGTGGTCTTGGGGGAGGACTTTTTTGTCA
CTCACCCCGACGCAAGTGTGCGGGCTTCCAGCGGATACGTCTTCCTGAAG
GAAATGGATCGCGACGCCTTTTCCAAGACGGCTACGCAACTCCGTGGGCG
CATGGAATCTGACAGGGGCAtgtga

Synonyms

Publications