rna3035, rna3035 (mRNA) Nannochloropsis gaditana

Overview
Namerna3035
Unique Namerna3035
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length591
Alignment locationCM002460.1:534742..535848 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100059g14.8036.mrna
Orig protein idgnl|cribi|Naga_100059g14.8036
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:534742..535848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100059g14gene2913Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3035rna3035-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27631.1cds3027Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3035 ID=rna3035|Name=rna3035|organism=Nannochloropsis gaditana|type=mRNA|length=591bp
ATGCATTATATTACATCTGTAAGTAGAGTCAACGATTCGACAAAAGGCCC
CGCACCGGCCAACAAGTGTGAAGGATGGCCAGACGAGGTCCAGAGCTTTC
TGGACGGGTCCATGCCGGCCTTGGCCGAATTGGACGCCTCGCGACAAGCC
GTTTTCTCTCCCACCGAAGAGCAGGAGAAAGAAGATGAGAAGCGTTCGCA
TGAATGTGGCCCAGAACGAGAGGAAAACAAAGGCGGTCGCTGCCCTGTCT
GTTGCATATCTGCAGGATCGAGCAATCATCCGTTCCAACCTGTTGCGGGC
GTGCAGGGTGCAGAATGGGTACAAACAAGAGATGCACCCACCCGCGCGGT
GGTTCGATTTAATGGGGGAAGCGTGGAGCCCACGCACCATCACACCCACG
GGCACGATGTTTTCGTAACCAAGGGCAGGAAGCGGGTGGAAAACTTAACG
CTGGGCAAGAGCTTTGAACTATCGGCGGGGTCGTATCTGTACACGGGAGC
GGGAGAGAGAGATCGTGTTGTGTACTATGAGGACACCGAATTTATTCTGT
GCTGTGACGGTCGCTTTGACGTTTTTTGGGATGAGATTTGA
back to top

protein sequence of rna3035

>rna3035-protein ID=rna3035-protein|Name=rna3035|organism=Nannochloropsis gaditana|type=polypeptide|length=368bp
MCETWSIIFENPIGIEGGQIKGHEPFEPTVPRCSERCEMSKHTAFFSRSL
THVLTIDFSIEKKLAGTRKPREVMATDDQTPVRPPSSSCPSTTCSSSVST
PRHPPASREPNASNIRPESPTIAAFGSSFSSSSSSSSSSSSYRLLTFVND
LRQSTDEASKDLKAALAENESLGAELVAEKKEEQRLLEGMATVISDTRQA
QDRAAAIQTTLSNLEARRTDLAWRVGLVRALEGEIHSFYTGFIDKMALLQ
EQYRREMGEEMEKAAGTHARLMEVRRELKVAAKGVRSAKEDCLEAEKRQE
IIEKERDMFSEELGAEQEETRRLVGGMKAMDKEITGTEETVSELETYTTA
IRDARMRIAGEAECRAGH
back to top

mRNA from alignment at CM002460.1:534742..535848+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3035 ID=rna3035|Name=rna3035|organism=Nannochloropsis gaditana|type=mRNA|length=1107bp|location=Sequence derived from alignment at CM002460.1:534742..535848+ (Nannochloropsis gaditana)
ATGTGTGAGACATGGAGCATCATATTTGAAAATCCAATTGGGATTGAAGG
GGGCCAAATTAAGGGCCATGAACCTTTCGAGCCCACTGTCCCTCGGTGTA
GTGAGAGATGTGAAATGAGTAAGCACACCGCATTTTTCTCCCGATCACTT
ACACATGTTTTGACCATCGATTTCTCTATAGAGAAAAAACTAGCCGGCAC
GCGCAAGCCGCGCGAAGTCATGGCTACTGATGACCAAACGCCTGtccgcc
ctccgtcctcgtcttgcccctccaccacctgctcctcctcggtctcaACG
CCTCGCCACCCTCCAGCATCCCGAGAGCCCAACGCCAGTAACATAAGACC
TGAATCCCCAACCATTGCTGCTTTcggctcctccttttcctcttcctcct
cctcatcttcctcctcctcctcctatcgCTTACTCACCTTTGTAAATGAC
CTGCGGCAGAGCACGGATGAGGCATCTAAAGATCTAAAAGCTGCATTGGC
TGAGAATGAAAGCCTAGGCGCAGAACTTGTTGctgaaaaaaaggaggagc
agcggctCTTGGAGGGCATGGCTACGGTAATTTCCGATACACGACAGGCT
CAGGACCGGGCGGCGGCGATTCAGACGACTCTGAGCAATTTAGAGGCGAG
GCGGACTGATCTGGCTTGGCGAGTGGGGCTGGTGAGAGCCTTAGAGGGCG
AAATACACTCTTTCTATACCGGCTTCATAGACAAGATGGCCCTCTTACAG
GAACAGTAtcggagggagatgggcgaggaaatggagaaggCTGCTGGGAC
GCACGCGCGGCTGATGGAGGTGCGTCGAGAGTTAAAAGTGGCGGCAAAGG
GAGTAAGATCGGCCAAGGAAGATTgtctggaggcggagaagcgACAAGAG
ATTAtagagaaggagcgagacaTGTTCTCAGAGGAGCTTGGGGcagagca
agaggaaaccCGGCGCCTGGTCGGTGGAATGAAAGCTATGGATAAAGAAA
TAACGGGCACGGAGGAAACGGTGAGCGAGTTGGAGACCTACACTACGGCC
ATAAGAGATGCACGAATGAGGATAGCGGGTGAGGCGGAATGCAGGGCAGG
GCATTGA
back to top

Coding sequence (CDS) from alignment at CM002460.1:534742..535848+

>rna3035 ID=rna3035|Name=rna3035|organism=Nannochloropsis gaditana|type=CDS|length=1107bp|location=Sequence derived from alignment at CM002460.1:534742..535848+ (Nannochloropsis gaditana)
ATGTGTGAGACATGGAGCATCATATTTGAAAATCCAATTGGGATTGAAGG
GGGCCAAATTAAGGGCCATGAACCTTTCGAGCCCACTGTCCCTCGGTGTA
GTGAGAGATGTGAAATGAGTAAGCACACCGCATTTTTCTCCCGATCACTT
ACACATGTTTTGACCATCGATTTCTCTATAGAGAAAAAACTAGCCGGCAC
GCGCAAGCCGCGCGAAGTCATGGCTACTGATGACCAAACGCCTGtccgcc
ctccgtcctcgtcttgcccctccaccacctgctcctcctcggtctcaACG
CCTCGCCACCCTCCAGCATCCCGAGAGCCCAACGCCAGTAACATAAGACC
TGAATCCCCAACCATTGCTGCTTTcggctcctccttttcctcttcctcct
cctcatcttcctcctcctcctcctatcgCTTACTCACCTTTGTAAATGAC
CTGCGGCAGAGCACGGATGAGGCATCTAAAGATCTAAAAGCTGCATTGGC
TGAGAATGAAAGCCTAGGCGCAGAACTTGTTGctgaaaaaaaggaggagc
agcggctCTTGGAGGGCATGGCTACGGTAATTTCCGATACACGACAGGCT
CAGGACCGGGCGGCGGCGATTCAGACGACTCTGAGCAATTTAGAGGCGAG
GCGGACTGATCTGGCTTGGCGAGTGGGGCTGGTGAGAGCCTTAGAGGGCG
AAATACACTCTTTCTATACCGGCTTCATAGACAAGATGGCCCTCTTACAG
GAACAGTAtcggagggagatgggcgaggaaatggagaaggCTGCTGGGAC
GCACGCGCGGCTGATGGAGGTGCGTCGAGAGTTAAAAGTGGCGGCAAAGG
GAGTAAGATCGGCCAAGGAAGATTgtctggaggcggagaagcgACAAGAG
ATTAtagagaaggagcgagacaTGTTCTCAGAGGAGCTTGGGGcagagca
agaggaaaccCGGCGCCTGGTCGGTGGAATGAAAGCTATGGATAAAGAAA
TAACGGGCACGGAGGAAACGGTGAGCGAGTTGGAGACCTACACTACGGCC
ATAAGAGATGCACGAATGAGGATAGCGGGTGAGGCGGAATGCAGGGCAGG
GCATTGA
back to top
Synonyms
Publications