rna3031, rna3031 (mRNA) Nannochloropsis gaditana

Overview
Namerna3031
Unique Namerna3031
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1327
Alignment locationCM002460.1:529907..531448 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100059g11.8052.mrna
Orig protein idgnl|cribi|Naga_100059g11.8052
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:529907..531448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100059g11gene2910Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3031rna3031-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27647.1cds3023Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3031 ID=rna3031|Name=rna3031|organism=Nannochloropsis gaditana|type=mRNA|length=1327bp
AGAAATAAAGTGAGTGTTGATTTTTAAGTGACAACTTACGAGGGGATAAC
TATATCTCTATCAAGCATCAAAGTAGGTCATCAACGCTGTATGTGCCCTT
GAAATTATTGCGGGTTGTCGGTGGGAAGCGGATGAAGACGACAGGGAGCA
TCGGCTCTCTACATCTCCCTCAGACCGAGTCCTCGGGACAGATTGAGCAA
CAAAAGCTCGATGATGACGGCAGTGAATCGGTACATGCTAATAAAACTGA
TAGTTGCATAATCAGCAGCAGGGGTGGCAAATCGATGGACATGGGTGAGG
TGAGGAGGTTGTTCTTCAAACAAACACAGAGGGCCAACATCCTTCTGTGC
AGGCAAACAAAGCTTGACAGTCTTTATCAACGCATGCATAAGAAACATCT
GAACCTGGAAAATGATTCCAGTACTGCTGAGACCGAGTTAGAGACAGTGC
AAGATTCTTTACAAAGGCTCCAGGGCCTTGAAAAGAAACTAGAAAGAAGA
TACGAAAACCTCATTGAAAATCGTCAGTCCGAAATGGAAGCCGAGGCTGC
TCGGTGCTCTGCGCGATCAAAGAGGTTGCAAGCGTTGGTGGAGGAGTTTC
AGGCAGAGCAAAACCGTGTCTACGAGAAAAGGGAAAGTTTGCGAGCACAA
AGGGACAACCTGGCCACTCAGGTAAGATCCGAGCTTGCAGCTGTAGACAA
AATAACTTCAGAGAAGAAGGTAAAAGAACAAGCCCGAGAGACACAGATGG
CCATTTACAAAGAGCAATGGGAAGAGCTGGATAAGGCATTTGAAGGAATG
AATGCCGAAATGAAAGACTTGGATTGCAAGCTTCAAGCAGACGAGAAACG
AATCGCTCTGTCTCGCGAGCATCTAGCGCAAAGCAACTCTAAAATCAGTC
ACATGATGCGTGAGGGGAACGAAATGGAAAGCGAATTTGATAAAAGGTCA
GGCAGTGACGTGAACATGGAGACATCTAGAGAAGGCAGCAAAGAAACCAA
CAAAAACGTACTAACAGAAGGAGATCTGGCAAGATTACAAAAGAAAGTGA
AGATGCTCGAAAAGGATCGAAAACGCTTTGAGGCTATCAAGGATCGCCAA
AGTGAAGTATGTTTAGACTTGCGTGCGCAGGACGCGAAAATTAAAGCTGA
AATCAAAATCGTGCAAGCAAAGAAGAGTCGCTTGGAGGACCTGGTAGCCA
AATTGCAGGAGGAGGACGCAAAACTCAACTATCAAATTTCAAATGCTTTG
CAAGAGCATCAGTTATAATGTTTTAAAGTGGGATCGGTTCCCCCCCGCCA
AAAATAAAAATAAAACAAACCTTAGAT
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protein sequence of rna3031

>rna3031-protein ID=rna3031-protein|Name=rna3031|organism=Nannochloropsis gaditana|type=polypeptide|length=399bp
MPGRARGLAPSCGVHASIPCTYMNLNTNGRFSLYCANLSPNFLDSILQFK
RGLSGDLNTDTKREADGSIKWTGSKQRVALTMQNNAHQRVSLSHSFLKRM
KKNQTTVCGRFLVMLLSFVAASSDPEIKRTSAPILLLDLNLPSITPDEYL
ESFWHDTSFYENFLKESGDRDVSIQPWSPAQPSTHSVAHHKMTHRTRTIV
TKHPVKAKMPGIPSHVRSTKTQVLSEEKINRNGSVIIRVHETNEVEGVPF
ADRFLVAVVWTATWTDHTSEEERKFNPKTVRLTVHQHVIFRQSFLLEKMV
ERDSRKETLDTVKLWSTLVHQQVMASEGAPSSTPLQGGDEGQEAKARRDH
ECILMAVTRKVLVTGAAAVFILLVGKTAFYLPDELARLARCRRQKPKNQ
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mRNA from alignment at CM002460.1:529907..531448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3031 ID=rna3031|Name=rna3031|organism=Nannochloropsis gaditana|type=mRNA|length=1542bp|location=Sequence derived from alignment at CM002460.1:529907..531448- (Nannochloropsis gaditana)
ACGTGCCTATGCCTGGTCGTGCGCGAGGACTTGCACCCTCTTGTGGTGTC
CACGCTTCAATCCCTTGCACTTACATGAATCTAAATACAAATGGCAGGTT
TTCACTCTACTGTGCCAACTTGTCACCGAATTTTCTTGACTCTATACTTC
AATTCAAAAGAGGACTAAGCGGAGACCTCAACACAGACACAAAGAGAGAG
GCCGACGGGAGCATAAAGTGGACAGGGAGCAAGCAACGTGTCGCCCTTAC
CATGCAAAACAACGCGCATCAACGAGTATCTTTGTCTCATAGTTTTTTGA
AGCGCATGAAGAAAAATCAGACCACAGTATGCGGTCGCTTTTTGGTGATG
TTACTAAGCTTTGTCGCAGCGAGCTCAGACCCCGAAATTAAGCGCACCTC
CGCCCCAATCCTCCTGCTCGATCTCAATCTTCCCTCTATCACTCCCGATG
AGTATCTTGAATCCTTCTGGCATGATACAAGTTTCTATGAAAATTTTCTT
AAAGAGTCCGGTACGTTCACGGAAATACTTGATTGCAGCGCAGAGAGGCG
TCTGTCTTGTGCAACCGATACCTTTTCTTCGTTGTATCAGGCATACGTAT
GTAACATAGCCAGAACATACGTATATCTTAACGAGTTGATGCGTAATGAA
GGAGGATCTTCTGGGTCATAACGAGAAATACCCTGGGTTTATATCTCGAA
CAAATTTTATGTTACAACACGTTACCTCGACACTTTGTCAATCGAAGGCA
TTAATCATCTTCTTTTATCCCTCACAACAAATTGAAGGCGATCGTGATGT
GAGCATTCAACCCTGGTCTCCGGCCCAGCCCTCTACACATAGCGTGGCGC
ACCACAAAATGACGCACAGGACTCGCACAATCGTGACAAAACACCCAGTG
AAGGCAAAGATGCCTGGGATACCGAGCCATGTTCGGAGTACCAAAACCCA
GGTCTTATCTGAGGAAAAGATCAATAGGAATGGCTCCGTTATCATCCGGG
TTCACGAGACAAATGAGGTTGAGGGAGTGCCATTCGCAGATCGCTTCCTT
GTCGCGGTAGTGTGGACTGCAACCTGGACCGACCACACGAGCGAAGAAGA
GCGGAAATTTAACCCGAAAACAGTGCGACTGACAGTTCACCAGCATGTGA
TATTTCGTCAATCTTTCTTACTGGAGAAAATGGTGGAGAGAGATTCAAGA
AAGGAGACGCTCGACACAGTGAAATTGTGGAGCACGCTAGTCCATCAGCA
GGTGATGGCGTCAGAAGGTGCGCCGTCATCAACACCCCTGCAGGGAGGTG
ACGAAGGACAAGAGGCGAAAGCCAGGAGAGATCATGAATGTATCTTAATG
GCGGTGACACGGAAGGTGCTGGTGACGGGTGCTGCGGCAGTCTTCATTCT
TTTAGTGGGCAAAACCGCTTTTTATCTTCCCGACGAACTCGCCAGACTGG
CGCGTTGTCGTCGGCAGAAACCGAAAAATCAATGAGTTGTAAAAAATCAG
CAAGCACACTTTGTACATGGCAAAGAAAAATCGACGCAATGA
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Coding sequence (CDS) from alignment at CM002460.1:529907..531448-

>rna3031 ID=rna3031|Name=rna3031|organism=Nannochloropsis gaditana|type=CDS|length=2400bp|location=Sequence derived from alignment at CM002460.1:529907..531448- (Nannochloropsis gaditana)
GCGATCGTGATGTGAGCATTCAACCCTGGTCTCCGGCCCAGCCCTCTACA
CATAGCGTGGCGCACCACAAAATGACGCACAGGACTCGCACAATCGTGAC
AAAACACCCAGTGAAGGCAAAGATGCCTGGGATACCGAGCCATGTTCGGA
GTACCAAAACCCAGGTCTTATCTGAGGAAAAGATCAATAGGAATGGCTCC
GTTATCATCCGGGTTCACGAGACAAATGAGGTTGAGGGAGTGCCATTCGC
AGATCGCTTCCTTGTCGCGGTAGTGTGGACTGCAACCTGGACCGACCACA
CGAGCGAAGAAGAGCGGAAATTTAACCCGAAAACAGTGCGACTGACAGTT
CACCAGCATGTGATATTTCGTCAATCTTTCTTACTGGAGAAAATGGTGGA
GAGAGATTCAAGAAAGGAGACGCTCGACACAGTGAAATTGTGGAGCACGC
TAGTCCATCAGCAGGTGATGGCGTCAGAAGGTGCGCCGTCATCAACACCC
CTGCAGGGAGGTGACGAAGGACAAGAGGCGAAAGCCAGGAGAGATCATGA
ATGTATCTTAATGGCGGTGACACGGAAGGTGCTGGTGACGGGTGCTGCGG
CAGTCTTCATTCTTTTAGTGGGCAAAACCGCTTTTTATCTTCCCGACGAA
CTCGCCAGACTGGCGCGTTGTCGTCGGCAGAAACCGAAAAATCAATGAAT
GCCTGGTCGTGCGCGAGGACTTGCACCCTCTTGTGGTGTCCACGCTTCAA
TCCCTTGCACTTACATGAATCTAAATACAAATGGCAGGTTTTCACTCTAC
TGTGCCAACTTGTCACCGAATTTTCTTGACTCTATACTTCAATTCAAAAG
AGGACTAAGCGGAGACCTCAACACAGACACAAAGAGAGAGGCCGACGGGA
GCATAAAGTGGACAGGGAGCAAGCAACGTGTCGCCCTTACCATGCAAAAC
AACGCGCATCAACGAGTATCTTTGTCTCATAGTTTTTTGAAGCGCATGAA
GAAAAATCAGACCACAGTATGCGGTCGCTTTTTGGTGATGTTACTAAGCT
TTGTCGCAGCGAGCTCAGACCCCGAAATTAAGCGCACCTCCGCCCCAATC
CTCCTGCTCGATCTCAATCTTCCCTCTATCACTCCCGATGAGTATCTTGA
ATCCTTCTGGCATGATACAAGTTTCTATGAAAATTTTCTTAAAGAGTCCG
GCGATCGTGATGTGAGCATTCAACCCTGGTCTCCGGCCCAGCCCTCTACA
CATAGCGTGGCGCACCACAAAATGACGCACAGGACTCGCACAATCGTGAC
AAAACACCCAGTGAAGGCAAAGATGCCTGGGATACCGAGCCATGTTCGGA
GTACCAAAACCCAGGTCTTATCTGAGGAAAAGATCAATAGGAATGGCTCC
GTTATCATCCGGGTTCACGAGACAAATGAGGTTGAGGGAGTGCCATTCGC
AGATCGCTTCCTTGTCGCGGTAGTGTGGACTGCAACCTGGACCGACCACA
CGAGCGAAGAAGAGCGGAAATTTAACCCGAAAACAGTGCGACTGACAGTT
CACCAGCATGTGATATTTCGTCAATCTTTCTTACTGGAGAAAATGGTGGA
GAGAGATTCAAGAAAGGAGACGCTCGACACAGTGAAATTGTGGAGCACGC
TAGTCCATCAGCAGGTGATGGCGTCAGAAGGTGCGCCGTCATCAACACCC
CTGCAGGGAGGTGACGAAGGACAAGAGGCGAAAGCCAGGAGAGATCATGA
ATGTATCTTAATGGCGGTGACACGGAAGGTGCTGGTGACGGGTGCTGCGG
CAGTCTTCATTCTTTTAGTGGGCAAAACCGCTTTTTATCTTCCCGACGAA
CTCGCCAGACTGGCGCGTTGTCGTCGGCAGAAACCGAAAAATCAATGAAT
GCCTGGTCGTGCGCGAGGACTTGCACCCTCTTGTGGTGTCCACGCTTCAA
TCCCTTGCACTTACATGAATCTAAATACAAATGGCAGGTTTTCACTCTAC
TGTGCCAACTTGTCACCGAATTTTCTTGACTCTATACTTCAATTCAAAAG
AGGACTAAGCGGAGACCTCAACACAGACACAAAGAGAGAGGCCGACGGGA
GCATAAAGTGGACAGGGAGCAAGCAACGTGTCGCCCTTACCATGCAAAAC
AACGCGCATCAACGAGTATCTTTGTCTCATAGTTTTTTGAAGCGCATGAA
GAAAAATCAGACCACAGTATGCGGTCGCTTTTTGGTGATGTTACTAAGCT
TTGTCGCAGCGAGCTCAGACCCCGAAATTAAGCGCACCTCCGCCCCAATC
CTCCTGCTCGATCTCAATCTTCCCTCTATCACTCCCGATGAGTATCTTGA
ATCCTTCTGGCATGATACAAGTTTCTATGAAAATTTTCTTAAAGAGTCCG
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Synonyms
Publications