rna3028, rna3028 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3028
Unique Name	rna3028
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1074
Alignment location	CM002460.1:523594..525441 +

Link to JBrowse

Properties


Property Name	Value
Product	Orn/Lys/Arg decarboxylase
Orig transcript id	gnl\|cribi\|Naga_100059g8.8040.mrna
Orig protein id	gnl\|cribi\|Naga_100059g8.8040
Gene	OKR_DC
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:523594..525441 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
OKR_DC	gene2907	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3028	rna3028-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27635.1	cds3020	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:523594..525441+
coding sequence from alignment at CM002460.1:523594..525441+

mRNA sequence

>rna3028 ID=rna3028|Name=rna3028|organism=Nannochloropsis gaditana|type=mRNA|length=1074bp
ATGTTGCAGGTGCAGAGACGAACCACGCGCGATGGTCTGGCTTACTTGAT
GAAGTCCTTGCCTTCATGTAGCACATCCAACTCGTCGGAGCCCTGTACGA
TCTTGTTCGGACATGCCAATGGATTTAATAAGGAGATTTTCCTTCCAGTC
TGGGAGGACCTTGAAAGGCGGTGGCAGGCGCATAAAGGGCTGCGGTCCCC
CCTTATACTTGTCTCCTTTGACTTCACAGGCCATGGAGACAGCAGACATC
CTTTGGGAAACGACCGCTACGACTGGCGAAACGGGGCTGGCAGTGATGTG
ATGGAAATGTTGCAGGAGATGGGCCAAAGGGGGCGGACGCCGTGCATTGG
CGTGGGGCACTCGCTGGGGGCTTCGGCCATGACATTGGTGGAATTAGCGC
ACCCGGGCATGTTTTCTATGGGTTTGGTTTTGATAGAGCCTGTTTTAGTG
CCTGTGGGCGGAGAGAGCACCATGACGAAATCACTTTCAGAGCGAGCGTT
GCGGCGACGTGCATCGTGGCCTTCGAGGGAAGCTGTCCGGGAGTACATGG
AACGAAGGCCAATATTCAAACGCTGGGATTCCAGAGCACTGGATGCCTAC
CTGGAGGGAGGGATGGAGGAAAGGGCCCTCACCGACGCCTCTCACGACGA
AGACCTGACAGCCTGCCCTTCTGCTCGCGAGCCATCAAGTCATCGAGACA
GCGTGGAAATTGTCTTGAAATGCAAACCCAAGACTGAGGCTGGTTACTAC
ACAGGCTCTGGCGCCAGTGTCTGGCCGCAGCTCCACCAGCTTGGACAGGC
TCGTCCCGTGACATTTATAGCGGGGGAGAAATCGGAGCACATGCCTGCCG
TGCTCTCCGCGACCCAGGCTGTTACTTCGGGTGCCGATGCAGCCAAGACG
TTGGTGGGAATGATGGGGGCGAGAGCGAAGGTTTTCGTGGTGCCAAACGC
CAGCCATTTTGTCCTGATGGAGGACGTGGACAGGGTTGCGGAGTTGGTCT
GGGGACACGTCTTGCAGACTGTGGGGAGAGAGGCCTCGAATGAAGTGTGT
GGAAACAAGCGCTCTTCGTTGTGA

protein sequence of rna3028

>rna3028-protein ID=rna3028-protein|Name=rna3028|organism=Nannochloropsis gaditana|type=polypeptide|length=615bp
MIAFSLGRLEAPLLLLGLVGFIKAHAFVAPCRPRPRYESAARPLRRWARE
HGADQSKSPIVEALSLAAARIKAPFFFPGHKMGRGLPVGLPGPFAETNTA
LNKTRVHRDDVWQHDLPEIPELDNLFAPEGPIRDAETLAAETFGGAQRTW
FLVNGSTAGVLAALLALVRRHQQEGQQHPARSGRSIQSKVLLPRNVHKSA
INGLILSGAVPVFLSPVYDPAWDICHGVPIESALQQALEEHASGSEVAAV
LLVSPTYHGAVMDIEQAALLCAKFKVPLIVDEAHGAHLAFLEVEVNEPGN
VGPLASRAMTGALAQGADLVVQSTHKTLTAVSQCAMMHAGKGPLVDSAML
EFVGSALQLVQSSSPNYVLLASLDGARWQLGSPLGGGRAALHRAQKLAAK
AKRLLLEETPFPILKPPDRPKGGAFVGLDPLRLTVGTMGTGMSGFDADEV
LIEEHGVYAELPASRTLTFAVGPGSEEEDIDCLVAAFKALATLVDKGKRD
GSQDMAGEEASSFMTDFPPFDGKQAAAGSLKCGPRDAYFTASEVLSTNDE
RVVGRASAETVCPYPPGIPVLLPGEIITVEVLRFLKGVLSTGGSVTGCSD
PSLGKIRVLCWEKEK

mRNA from alignment at CM002460.1:523594..525441+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3028 ID=rna3028|Name=rna3028|organism=Nannochloropsis gaditana|type=mRNA|length=1848bp|location=Sequence derived from alignment at CM002460.1:523594..525441+ (Nannochloropsis gaditana)
ATGATCGCCTTTTCCCTTGGGCGGTTGGAGGCACCATTGCTGCTTCTAGG
CCTTGTAGGATTCATCAAGGCCCATGCTTTCGTCGCGCcttgtcgtcctc
gtccgcgcTACGAGAGCGCTGCCAGGCCGTTGCGCCGGTGGGCACGAGAG
CATGGGGCGGACCAATCGAAATCTCCCATTGTCGaagccctctccttggc
cgcaGCACGCATCAAAgcacctttcttttttccaggGCACAAGATGGGGC
GAGGACTCCCCGTGGGGCTGCCTGGCCCTTTTGCCGAAACCAACACTGCC
CTGAATAAGACGCGCGTCCACAGGGATGATGTGTGGCAGCACGATCTTCC
AGAAATTCCAGAGCTCGACAACCTCTTTGCTCCCGAAGGTCCTATTCGAG
ATGCCGAAACGCTGGCGGCAGAAACTTTCGGAGGCGCACAGCGGACGTGG
TTTCTGGTGAACGGGAGTACGGCGGGTGTTTTGGCAGCTCTGCTTGCACT
CGTGCGCAGGCACCAACAAGAAGGGCAGCAGCACCCGGCGCGTTCAGGAA
GGTCTATCCAGAGCAAGGTGCTTCTCCCTCGAAACGTCCATAAATCGGCT
ATCAATGGTCTCATACTCTCTGGGGCCGTTCCTGTCTTCCTCAGTCCCGT
CTACGACCCCGCATGGGACATCTGTCACGGTGTCCCGATTGAAAGCGCGC
TGCAGCAGGCCTTGGAAGAACACGCCTCTGGatcggaggtggcggccgtg
CTGCTCGTCTCGCCGACCTATCACGGCGCGGTCATGGACATAGAGCAAGC
CGCGCTTCTGTGCGCAAAGTTCAAGGTCCCCCTGATAGTCGACGAGGCGC
ATGGAGCACACCTGGCTTTCCTAGAAGTAGAAGTAAACGAACCGGGCAAC
GTAGGCCCGCTCGCTTCGCGAGCCATGACAGGTGCCCTTGCTCAGGGTGC
AGACTTGGTCGTCCAGAGCACGCACAAGACCCTCACGGCAGTCAGTCAGT
GTGCGATGATGCACGCTGGCAAGGGCCCCTTGGTGGACAGTGCCATGCTC
GAGTTTGTGGGATCGGCTCTACAACTTGTGCAGAGCAGCTCACCCAACTA
CGTGCTGCTGGCGTCGCTCGACGGGGCGCGATGGCAGCTTGGCTCCCCCC
TGGGGGGTGGGCGGGCAGCATTGCATCGGGCCCAGAAACTAGCAGCAAAG
GCCAAGCGcttgctgctggaggagacgccCTTTCCGATTTTAAAACCCCC
AGATCGGCccaaggggggggcattTGTGGGTTTGGATCCGCTCCGATTGA
CCGTCGGGACGATGGGGACCGGGATGAGTGGCTTCGACGCTGACGAGGTG
CTGATCGAGGAGCACGGGGTGTACGCGGAGCTGCCGGCGTCTCGCACACT
GACGTTCGCGGTGGGAcctgggagcgaggaggaagatatAGATTGCCTCG
TCGCTGCCTTCAAGGCATTGGCTACATTGGTagacaaagggaagagggat
gggagCCAGGACATGGCTGGGGAAGAAGCGTCGTCGTTCATGACcgattt
cccccctttcgaCGGCAAGCAGGCTGCGGCGGGGAGCTTGAAATGCGGAC
CGCGCGATGCCTATTTTACGGCCTCCGAGGTGCTGTCCACAAACGACGAG
CGAGTTGTGGGTCGAGCGAGCGCGGAGACCGTTTGCCCCTACCCCCCCGG
CATTCCCGTCCTACTCCCGGGCGAGATCATTACCGTGGAGGTGTTGCGCT
TTCTAAAAGGCGTGCTTTCAACCGGGGGGTCGGTGACAGGGTGCAGCGAC
CCCAGCCTGGGGAAGATTCGTGTATTGTGttgggaaaaagagaaatga

Coding sequence (CDS) from alignment at CM002460.1:523594..525441+

>rna3028 ID=rna3028|Name=rna3028|organism=Nannochloropsis gaditana|type=CDS|length=1848bp|location=Sequence derived from alignment at CM002460.1:523594..525441+ (Nannochloropsis gaditana)
ATGATCGCCTTTTCCCTTGGGCGGTTGGAGGCACCATTGCTGCTTCTAGG
CCTTGTAGGATTCATCAAGGCCCATGCTTTCGTCGCGCcttgtcgtcctc
gtccgcgcTACGAGAGCGCTGCCAGGCCGTTGCGCCGGTGGGCACGAGAG
CATGGGGCGGACCAATCGAAATCTCCCATTGTCGaagccctctccttggc
cgcaGCACGCATCAAAgcacctttcttttttccaggGCACAAGATGGGGC
GAGGACTCCCCGTGGGGCTGCCTGGCCCTTTTGCCGAAACCAACACTGCC
CTGAATAAGACGCGCGTCCACAGGGATGATGTGTGGCAGCACGATCTTCC
AGAAATTCCAGAGCTCGACAACCTCTTTGCTCCCGAAGGTCCTATTCGAG
ATGCCGAAACGCTGGCGGCAGAAACTTTCGGAGGCGCACAGCGGACGTGG
TTTCTGGTGAACGGGAGTACGGCGGGTGTTTTGGCAGCTCTGCTTGCACT
CGTGCGCAGGCACCAACAAGAAGGGCAGCAGCACCCGGCGCGTTCAGGAA
GGTCTATCCAGAGCAAGGTGCTTCTCCCTCGAAACGTCCATAAATCGGCT
ATCAATGGTCTCATACTCTCTGGGGCCGTTCCTGTCTTCCTCAGTCCCGT
CTACGACCCCGCATGGGACATCTGTCACGGTGTCCCGATTGAAAGCGCGC
TGCAGCAGGCCTTGGAAGAACACGCCTCTGGatcggaggtggcggccgtg
CTGCTCGTCTCGCCGACCTATCACGGCGCGGTCATGGACATAGAGCAAGC
CGCGCTTCTGTGCGCAAAGTTCAAGGTCCCCCTGATAGTCGACGAGGCGC
ATGGAGCACACCTGGCTTTCCTAGAAGTAGAAGTAAACGAACCGGGCAAC
GTAGGCCCGCTCGCTTCGCGAGCCATGACAGGTGCCCTTGCTCAGGGTGC
AGACTTGGTCGTCCAGAGCACGCACAAGACCCTCACGGCAGTCAGTCAGT
GTGCGATGATGCACGCTGGCAAGGGCCCCTTGGTGGACAGTGCCATGCTC
GAGTTTGTGGGATCGGCTCTACAACTTGTGCAGAGCAGCTCACCCAACTA
CGTGCTGCTGGCGTCGCTCGACGGGGCGCGATGGCAGCTTGGCTCCCCCC
TGGGGGGTGGGCGGGCAGCATTGCATCGGGCCCAGAAACTAGCAGCAAAG
GCCAAGCGcttgctgctggaggagacgccCTTTCCGATTTTAAAACCCCC
AGATCGGCccaaggggggggcattTGTGGGTTTGGATCCGCTCCGATTGA
CCGTCGGGACGATGGGGACCGGGATGAGTGGCTTCGACGCTGACGAGGTG
CTGATCGAGGAGCACGGGGTGTACGCGGAGCTGCCGGCGTCTCGCACACT
GACGTTCGCGGTGGGAcctgggagcgaggaggaagatatAGATTGCCTCG
TCGCTGCCTTCAAGGCATTGGCTACATTGGTagacaaagggaagagggat
gggagCCAGGACATGGCTGGGGAAGAAGCGTCGTCGTTCATGACcgattt
cccccctttcgaCGGCAAGCAGGCTGCGGCGGGGAGCTTGAAATGCGGAC
CGCGCGATGCCTATTTTACGGCCTCCGAGGTGCTGTCCACAAACGACGAG
CGAGTTGTGGGTCGAGCGAGCGCGGAGACCGTTTGCCCCTACCCCCCCGG
CATTCCCGTCCTACTCCCGGGCGAGATCATTACCGTGGAGGTGTTGCGCT
TTCTAAAAGGCGTGCTTTCAACCGGGGGGTCGGTGACAGGGTGCAGCGAC
CCCAGCCTGGGGAAGATTCGTGTATTGTGttgggaaaaagagaaatga

Synonyms

Publications