rna3027, rna3027 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3027
Unique Name	rna3027
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	888
Alignment location	CM002460.1:521912..523278 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100059g7.8037.mrna
Orig protein id	gnl\|cribi\|Naga_100059g7.8037
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:521912..523278 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100059g7	gene2906	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3027	rna3027-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27632.1	cds3019	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:521912..523278+
coding sequence from alignment at CM002460.1:521912..523278+

mRNA sequence

>rna3027 ID=rna3027|Name=rna3027|organism=Nannochloropsis gaditana|type=mRNA|length=888bp
ATGGCTCGACAAGAAAACCCGTTCGACATGCAGATCAAGCTGCTGATGAT
AGGGGACTCGGGGGTGGGAAAGACCTGTCTGCTCCTGCGGTATGCGAACG
ACTCGTTCTCGCCCACCTTTATCACCACCATCGGCATTGACTTTAAGATC
AAGAATTTGGAGCTAGACGGGAGGCGGATCAAACTCCAGATCTGGGACAC
AGCGGGGCAAGAGCGTTTCCGAACAATCACCACGTCCTACTTCCGGGGAG
CCCAAGGCATCCTTCTTGTCTATGACGTGACGGATCGAAGATCCTTTGAA
TCCATTCGTAACTGGGTCGGTCAGATCCAACAGCACGCGGATGTGCACGT
GAATAAAATCTTGATTGGAAACAAATGCGACATGACGCCGCAGCGGGTGG
TGTCCACGGAGGAAGGCCAGAGCCTGGCGAACGACTTCGGTATTCAATTT
TTCGAAACGTCAGCGAAGAATGACATTAATGTGGAGAAATCGTTTGTAAC
GATTGCGCGGGAGGTGAAGAACAGGATGTTGGTGGACGGAGGTCCGCGGG
CGACGGGAGGGAAGGCGATTGTGGACGCGAAGAGGTCAAACGAGGCGAAG
AAGTGCTGGTCTCGGGGATGGAACGAGGGGGTTGGGCGGCATGTACGGTG
TGGCGGTAGAGGGAGCAACCGGTTGAGTAGGGCGAAACGTGTGACGAAAC
GCTACGTACGATATAGCGAAGGCGCATGCCTCCCATGTCTGTGTTTGGGT
GCGGGGCGAAAAGCGACGGACGAAGGGTTTTACCATCCCAAGAGAAATTT
GACAATTCCCAAGGGCATCCATAAAGGTCATTGTTGTATAGGCGGACGTT
CCCTTTTTCGAGGTTTACTTATGGCATCAGCACTATAA

protein sequence of rna3027

>rna3027-protein ID=rna3027-protein|Name=rna3027|organism=Nannochloropsis gaditana|type=polypeptide|length=357bp
MLQVQRRTTRDGLAYLMKSLPSCSTSNSSEPCTILFGHANGFNKEIFLPV
WEDLERRWQAHKGLRSPLILVSFDFTGHGDSRHPLGNDRYDWRNGAGSDV
MEMLQEMGQRGRTPCIGVGHSLGASAMTLVELAHPGMFSMGLVLIEPVLV
PVGGESTMTKSLSERALRRRASWPSREAVREYMERRPIFKRWDSRALDAY
LEGGMEERALTDASHDEDLTACPSAREPSSHRDSVEIVLKCKPKTEAGYY
TGSGASVWPQLHQLGQARPVTFIAGEKSEHMPAVLSATQAVTSGADAAKT
LVGMMGARAKVFVVPNASHFVLMEDVDRVAELVWGHVLQTVGREASNEVC
GNKRSSL

mRNA from alignment at CM002460.1:521912..523278+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3027 ID=rna3027|Name=rna3027|organism=Nannochloropsis gaditana|type=mRNA|length=1367bp|location=Sequence derived from alignment at CM002460.1:521912..523278+ (Nannochloropsis gaditana)
ATGTTGCAGGTGCAGAGACGTAAGTTCATAGGAAGTTGCTGGGAGTCTGC
GGCTCGATCGGACGGTACTTGGTACCCCCTGGCTTCATGTTTGACACATA
CTCCCATACAACAGGAACCACGCGCGATGGTCTGGCTTACTTGATGAAGT
CCTTGCCTTCATGTAGCACATCCAACTCGTCGGAGCCCTGTACGATCTTG
TTCGGACATGCCAATGGATTTAATAAGGAGATTTTCCTTCCAGTCTGGGA
GGACCTTGAAAGGCGGTGGCAGGCGCATAAAGGGCTGCGGTCCCCCCTTA
TACTTGTCTCCTTTGACTTCACAGGCCATGGAGACAGCAGACATCCTTTG
GGAAACGACCGCTACGACTGGCGAAACGGGGCTGGCAGTGATGTGATGGA
AATGTTGCAGGAGATGGGCCAAAGGGGGCGGACGCCGTGCATTGGCGTGG
GGCACTCGCTGGGGGCTTCGGCCATGACATTGGTGGAATTAGCGCACCCG
GGCATGTTTTCTATGGGTTTGGTTTTGATAGAGCCTGTTTTAGTGCCTGT
GGGCGGAGAGAGCACCATGACGAAATCACTTTCAGAGCGAGCGTTGCGGC
GACGTGCATCGTGGTAAGAATCCCATTCATCATATCAGGAGAAATCAACA
CACTATCACGGCAGTTCCTCGGTTTTATCAACACATCTGCTTGTGATGAA
GCTGGAGTGTAGCTTGCAGCATGTGtattcttcttttctccttgcaCAGA
CCCCAGACTAGGGGTGAATAAAAGTTCGAATGCGTCCTTTCTATACATTC
TTGCCCACTAGGCCTTCGAGGGAAGCTGTCCGGGAGTACATGGAACGAAG
GCCAATATTCAAACGCTGGGATTCCAGAGCACTGGATGCCtacctggagg
gagggatggaggaaagggccctCACCGACGCCTCTCACGACGAAGACCTG
ACAGCCTGCCCTTCTGCTCGCGAGCCATCAAGTCATCGAGACAGCGTGGA
AATTGTCTTGAAATGCAAACCCAAGACTGAGGCTGGTTACTACACAGGCT
CTGGCGCCAGTGTCTGGCCGCAGCTCCACCAGCTTGGACAGGCTCGTCCC
GTGACATTTATAGCGGGGGAGAAATCGGAGCACATGCCTGCCGTGCTCTC
CGCGACCCAGGCTGTTACTTCGGGTGCCGATGCAGCCAAGACGTTGGTGG
GAATGATGGGGGCGAGAGCGAAGGTTTTCGTGGTGCCAAACGCCAGCCAT
TTTGTCCtgatggaggacgtggacagGGTTGCGGAGTTGGTCTGGGGACA
CGTCTTGCAGACtgtggggagagaggcctCGAATGAAGTGTGTGGAAACA
AGCGCTCTTCGTTGTGA

Coding sequence (CDS) from alignment at CM002460.1:521912..523278+

>rna3027 ID=rna3027|Name=rna3027|organism=Nannochloropsis gaditana|type=CDS|length=3222bp|location=Sequence derived from alignment at CM002460.1:521912..523278+ (Nannochloropsis gaditana)
ATGTTGCAGGTGCAGAGACGAACCACGCGCGATGGTCTGGCTTACTTGAT
GAAGTCCTTGCCTTCATGTAGCACATCCAACTCGTCGGAGCCCTGTACGA
TCTTGTTCGGACATGCCAATGGATTTAATAAGGAGATTTTCCTTCCAGTC
TGGGAGGACCTTGAAAGGCGGTGGCAGGCGCATAAAGGGCTGCGGTCCCC
CCTTATACTTGTCTCCTTTGACTTCACAGGCCATGGAGACAGCAGACATC
CTTTGGGAAACGACCGCTACGACTGGCGAAACGGGGCTGGCAGTGATGTG
ATGGAAATGTTGCAGGAGATGGGCCAAAGGGGGCGGACGCCGTGCATTGG
CGTGGGGCACTCGCTGGGGGCTTCGGCCATGACATTGGTGGAATTAGCGC
ACCCGGGCATGTTTTCTATGGGTTTGGTTTTGATAGAGCCTGTTTTAGTG
CCTGTGGGCGGAGAGAGCACCATGACGAAATCACTTTCAGAGCGAGCGTT
GCGGCGACGTGCATCGTGGCCTTCGAGGGAAGCTGTCCGGGAGTACATGG
AACGAAGGCCAATATTCAAACGCTGGGATTCCAGAGCACTGGATGCCtac
ctggagggagggatggaggaaagggccctCACCGACGCCTCTCACGACGA
AGACCTGACAGCCTGCCCTTCTGCTCGCGAGCCATCAAGTCATCGAGACA
GCGTGGAAATTGTCTTGAAATGCAAACCCAAGACTGAGGCTGGTTACTAC
ACAGGCTCTGGCGCCAGTGTCTGGCCGCAGCTCCACCAGCTTGGACAGGC
TCGTCCCGTGACATTTATAGCGGGGGAGAAATCGGAGCACATGCCTGCCG
TGCTCTCCGCGACCCAGGCTGTTACTTCGGGTGCCGATGCAGCCAAGACG
TTGGTGGGAATGATGGGGGCGAGAGCGAAGGTTTTCGTGGTGCCAAACGC
CAGCCATTTTGTCCtgatggaggacgtggacagGGTTGCGGAGTTGGTCT
GGGGACACGTCTTGCAGACtgtggggagagaggcctCGAATGAAGTGTGT
GGAAACAAGCGCTCTTCGTTGTGAATGTTGCAGGTGCAGAGACGAACCAC
GCGCGATGGTCTGGCTTACTTGATGAAGTCCTTGCCTTCATGTAGCACAT
CCAACTCGTCGGAGCCCTGTACGATCTTGTTCGGACATGCCAATGGATTT
AATAAGGAGATTTTCCTTCCAGTCTGGGAGGACCTTGAAAGGCGGTGGCA
GGCGCATAAAGGGCTGCGGTCCCCCCTTATACTTGTCTCCTTTGACTTCA
CAGGCCATGGAGACAGCAGACATCCTTTGGGAAACGACCGCTACGACTGG
CGAAACGGGGCTGGCAGTGATGTGATGGAAATGTTGCAGGAGATGGGCCA
AAGGGGGCGGACGCCGTGCATTGGCGTGGGGCACTCGCTGGGGGCTTCGG
CCATGACATTGGTGGAATTAGCGCACCCGGGCATGTTTTCTATGGGTTTG
GTTTTGATAGAGCCTGTTTTAGTGCCTGTGGGCGGAGAGAGCACCATGAC
GAAATCACTTTCAGAGCGAGCGTTGCGGCGACGTGCATCGTGGCCTTCGA
GGGAAGCTGTCCGGGAGTACATGGAACGAAGGCCAATATTCAAACGCTGG
GATTCCAGAGCACTGGATGCCtacctggagggagggatggaggaaagggc
cctCACCGACGCCTCTCACGACGAAGACCTGACAGCCTGCCCTTCTGCTC
GCGAGCCATCAAGTCATCGAGACAGCGTGGAAATTGTCTTGAAATGCAAA
CCCAAGACTGAGGCTGGTTACTACACAGGCTCTGGCGCCAGTGTCTGGCC
GCAGCTCCACCAGCTTGGACAGGCTCGTCCCGTGACATTTATAGCGGGGG
AGAAATCGGAGCACATGCCTGCCGTGCTCTCCGCGACCCAGGCTGTTACT
TCGGGTGCCGATGCAGCCAAGACGTTGGTGGGAATGATGGGGGCGAGAGC
GAAGGTTTTCGTGGTGCCAAACGCCAGCCATTTTGTCCtgatggaggacg
tggacagGGTTGCGGAGTTGGTCTGGGGACACGTCTTGCAGACtgtgggg
agagaggcctCGAATGAAGTGTGTGGAAACAAGCGCTCTTCGTTGTGAAT
GTTGCAGGTGCAGAGACGAACCACGCGCGATGGTCTGGCTTACTTGATGA
AGTCCTTGCCTTCATGTAGCACATCCAACTCGTCGGAGCCCTGTACGATC
TTGTTCGGACATGCCAATGGATTTAATAAGGAGATTTTCCTTCCAGTCTG
GGAGGACCTTGAAAGGCGGTGGCAGGCGCATAAAGGGCTGCGGTCCCCCC
TTATACTTGTCTCCTTTGACTTCACAGGCCATGGAGACAGCAGACATCCT
TTGGGAAACGACCGCTACGACTGGCGAAACGGGGCTGGCAGTGATGTGAT
GGAAATGTTGCAGGAGATGGGCCAAAGGGGGCGGACGCCGTGCATTGGCG
TGGGGCACTCGCTGGGGGCTTCGGCCATGACATTGGTGGAATTAGCGCAC
CCGGGCATGTTTTCTATGGGTTTGGTTTTGATAGAGCCTGTTTTAGTGCC
TGTGGGCGGAGAGAGCACCATGACGAAATCACTTTCAGAGCGAGCGTTGC
GGCGACGTGCATCGTGGCCTTCGAGGGAAGCTGTCCGGGAGTACATGGAA
CGAAGGCCAATATTCAAACGCTGGGATTCCAGAGCACTGGATGCCtacct
ggagggagggatggaggaaagggccctCACCGACGCCTCTCACGACGAAG
ACCTGACAGCCTGCCCTTCTGCTCGCGAGCCATCAAGTCATCGAGACAGC
GTGGAAATTGTCTTGAAATGCAAACCCAAGACTGAGGCTGGTTACTACAC
AGGCTCTGGCGCCAGTGTCTGGCCGCAGCTCCACCAGCTTGGACAGGCTC
GTCCCGTGACATTTATAGCGGGGGAGAAATCGGAGCACATGCCTGCCGTG
CTCTCCGCGACCCAGGCTGTTACTTCGGGTGCCGATGCAGCCAAGACGTT
GGTGGGAATGATGGGGGCGAGAGCGAAGGTTTTCGTGGTGCCAAACGCCA
GCCATTTTGTCCtgatggaggacgtggacagGGTTGCGGAGTTGGTCTGG
GGACACGTCTTGCAGACtgtggggagagaggcctCGAATGAAGTGTGTGG
AAACAAGCGCTCTTCGTTGTGA

Synonyms

Publications