rna3020, rna3020 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3020
Unique Name	rna3020
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1863
Alignment location	CM002460.1:498643..500415 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100125g2.435.mrna
Orig protein id	gnl\|cribi\|Naga_100125g2.435
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:498643..500415 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100125g2	gene2899	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3020	rna3020-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27672.1	cds3012	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:498643..500415-
coding sequence from alignment at CM002460.1:498643..500415-

mRNA sequence

>rna3020 ID=rna3020|Name=rna3020|organism=Nannochloropsis gaditana|type=mRNA|length=1863bp
CCGGGGCCGGTGCGACGCGATTACGGTCGACCTCCACTGCCATCGCCAAG
ATAATGCACTTGCCCGAGTGTGTTGTGTTTCCTGCGCGTTCATGGGCTAA
GGCCGATGCCAAGTAGTGTGGTTTCATAGTCCGGATTCGGTGCGCGTCTG
GTGTGGAAGGCGACGCCCTCATAAACGTGACTGCGCAATATTTGTGCCAA
TGACAGTCTTCCCCCCTCTATTTTTCCAAGGTCACGGTTCTGGCGGCATG
ATAGTGTGCGAAAATTTTGTAGATGGGCAGTACCAGACTTCAAAAGGGGA
CTACCTCCCTGTAAAATCACCCACTGATGGCGTCCAAATCGGCAAAGTGT
ACCTGTCAGACGCTTCCGATGTAAGTACAGCGGTGGCGTGCGCTCAACGT
GCGTTCCCAGCGTGGAGTGGGATGACGATGAAGGCGCGGGCCAGCATAAT
GTTTCGGTTTCAGCACCTGATGGAGCAGCATGCCGAGGAACTTGCCCTCT
TGGTCGTGCGTGAGAATGGGAAAAATTTGGCGGAGGCACGGGCGTCAGTG
GCGAAAGGCAATGAGACGGTGGAGTGGGCCTGTGGATTACCCCAGATGGC
GCAAGGGAAATTGCTTCAGGTTTCGCGCGGTGTGACCTGTTGCGACATGC
GTGAGGCCATCGGCGTGGTTGTGAGCGTCTGTCCTCTCAACTTCCCGATC
ATGTGCCCGATGTGGACCATCCCCATCGCCCTAACCGCGGGGAACTGCCT
GATTCTGAAGCCCTCCGAGAAGGTCCCCCTGACCATGCACCGTGTCGCCG
CCCTTCTCCACGAGGCCGGCGTCCCGCCCGGCGTCTTTCAGACCGTGAAC
GGACAGGTGGAGGCAGTCAATGCCTTGATCGACCACCCCTTGGTTCGCGG
GGTCACCTTCGTTGGCTCCTCCCGCGTGGCCGAGGTGGTGGCGGAGCGGG
CGAGTCGGCTCAACAAGCGGGTGCTGGCCATGGGCGGGGCCAAGAACCAC
CTCGTCGCCCTGCCGGACTGCCACGTGGAAAGCGCTTCCAGTGACATTGT
GGCGAGCTTCGCCGGCTGTGCCGGTCAAAGGTGCATGGCGGCCACCGTCC
TGATCCTGATCGGAGAACAGGCCTCCCTCCTGGAGGCCGTCATCCGCAAG
GCAGGGGCCCTGACGCCGGGCGTGGAGCCGGGGCAAGTGGGAGCGATCAT
CGATGCTATATCCCAGGAGCGCATTCTCCGCTACATCGACGAGGCAGAGA
AACAAGGAGTCACACTCTTGCTGGACGGGCGTGGTTGGGCTCAGGCGGCG
AAGGCAGGGACCTGGGTGGGCCCGACCATTCTCCTCCACACGCGCGCGGA
CGACGAGGCTATGCGGGAGGAAATATTCGGTCCTGTCCTCTCTGTGATCC
GCGTGGCCACCTGGGAGGAGGCGCTGGCCATCGAGGCCTCGAATCCGCAC
GGAAATGCCGCCTGCGTCTACACTACTGTGGGTGCACATGCTCAGTTCTT
CGAGACGAGGTTCAGGGCCGGCATGATCGGTGTCAACGTGGGCGTGCCCG
TACCTCGGGAACCTTTCTCTTTCGGGGGACTCTTCGGGACGCGCAGCAAG
TACGGGAGCATGGTGGACATCACGGGCGAAGGCTGCTTGGAGTTCATGAC
GAACAAGCGCAAGATTACCAGCAAGTGGGCATTTCCTGAGGGCGAGAGCA
ACGGTGCTGGTGGTAGGGCGGCACCCCTGGCGGAGGGGGGTAAGAAAGAA
TTAGATCAGGGAGTGCGCCAGGCGCACGCACCTGACCGGGCCAGTTTCGT
TGGTGCCATGTAAAGTCCGACAATGAGGGATATAATGAAAAAAAATGTTC
GAATATAGTTGTG

protein sequence of rna3020

>rna3020-protein ID=rna3020-protein|Name=rna3020|organism=Nannochloropsis gaditana|type=polypeptide|length=516bp
MRPTTRLFIPFLLSLVSLPSTISFIGRTACSSKSQRALRRREGSPKAVAF
KPQKGLAHDFCLAILGDLHLDPTDMKLHNEGRKHIIDVMGGMKKSLSSSK
SQAHLISLGDLGAYGEAGTTACFEHAKAYLDGFQLPYNLVTGNHDLEGMD
EFATDVENLQAWKKVFGLNAPTFCHQIGDKTLCVGLSTTRFRSSPFSSHE
VYIPKEQTIWLENLLKQHPEEEGWRVLVFSHAPPMGAGIRVVQNVHIKNG
CAFLNHSSGDEERRVFIRLCKQYHCIKAWFSGHFHLSHDYEDSITAKEGT
VFVQTGVMGEKSTRDGRRQSRVVRGDGAGLHVYTVNHHKGGELRLDVSIR
YKPGGEDLVEAHGHEDYAHDKWFSAYRPQEEDGCYLQSPDGIILEASDRG
GGEKVCWWHMADGRVLGVHEGQVIEYDAETLSPLGIVVDREQLQGREMVV
VGEGQALILVSSLDALNEKTTAADYDIIHPNQDGSYWRRWQRNKLVRQRE
KEREKIAADWLKQNFK

mRNA from alignment at CM002460.1:498643..500415-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3020 ID=rna3020|Name=rna3020|organism=Nannochloropsis gaditana|type=mRNA|length=1773bp|location=Sequence derived from alignment at CM002460.1:498643..500415- (Nannochloropsis gaditana)
CAGGTGCCCTCATGAGACCGACAACCCGTCTCTTCATTCCGTTTCTGCTT
TCACTTGTCTCGCTGCCAAGCACGATATCATTTATTGGTCGTACTGCCTG
TTCTTCGAAGTCGCAGCGAGCCCTGCGGAGAAGAGAGGGCTCTCCCAAGG
CCGTCGCTTTCAAGCCTCAGAAGGGTCTCGCGCATGACTTTTGCCTCGCA
ATTTTAGGGGATCTTCACTTGGACCCGACAGACATGAAGCTTCATAATGA
AGGACGCAAGCATATCATAGATGTTATGGGGGGGATGAAAAAGTCGCTTT
CCTCGAGCAAGTCGCAAGCTCACCTCATCAGTCTCGGGGACCTAGGCGCA
TACGGCGAGGCAGGCACCACGGCTTGCTTCGAGCACGCAAAAGCTTACCT
TGACGGCTTTCAATTGCCTTACAACCTCGTCACTGGGTAAGAAATCTTCT
TCGGTGCATTTTTAAATATTGAGGGCAACGCCACTCACAGGCGCCTCGCA
TTCCACTTCTTTTCCCGCCTCAGGAATCATGATTTGGAGGGCATGGACGA
GTTTGCCACGGATGTGGAAAATCTGCAAGCCTGGAAGAAAGTCTTTGGTC
TTAATGCACCAACCTTCTGCCATCAAATAGGAGACAAGACTCTATGTGTG
GGTCTGAGCACGACCCGTTTCCGCTCCTCGCCCTTCTCCTCGCACGAAGT
TTACATCCCGAAGGAGCAGACCATCTGGCTCGAAAATTTGCTTAAGCAAC
ACCCCGAGGAAGAAGGGTGGCGGGTGCTCGTGTTCAGTCACGCCCCGCCC
ATGGGAGCAGGCATCCGGGTGGTCCAGAATGTGCACATCAAGAATGGTTG
CGCCTTTTTGAATCATTCGAGCGGCGACGAGGAACGACGTGTCTTCATCC
GCCTCTGCAAACAGTATCACTGCATCAAGGCCTGGTTTTCGGGGCATTTC
CACCTGTCCCACGACTACGAGGACTCCATTACGGCTAAGGAAGGCACTGT
CTTTGTGCAAACGGGGGTCATGGGCGAGAAGTCGACGAGGGACGGTCGGC
GCCAGAGCCGAGTCGTGCGAGGAGATGGGGCGGGCCTGCATGTGTACACT
GTCAACCACCACAAGGGCGGGGAGCTGCGCCTGGACGTTTCCATCCGTTA
CAAGCCAGGCGGAGAGGACCTGGTGGAGGCGCACGGGCACGAGGACTACG
CGCATGACAAGTGGTTCTCGGCGTACCGACCCCAGGAGGAGGACGGGTGT
TATCTGCAAAGTCCCGACGGGATTATTTTGGAGGCGAGCGACCGCGGGGG
GGGTGAAAAGGTGTGCTGGTGGCACATGGCGGACGGGCGCGTGCTGGGGG
TGCATGAGGGGCAAGTGATCGAGTATGACGCCGAGACGCTCTCCCCGCTG
GGAATCGTGGTGGATAGGGAGCAGCTCCAGGGTCGAGAGATGGTGGTTGT
CGGGGAGGGGCAGGCCTTGATTCTCGTGTCCTCTCTGGACGCGCTCAACG
AGAAGACCACGGCCGCGGACTACGACATCATCCACCCCAACCAGGACGGG
AGTTACTGGCGGCGGTGGCAGCGAAACAAGCTCGTGCGGCAGAGGGAGAA
GGAGCGGGAGAAGATCGCAGCGGATTGGCTCAAGCAAAATTTCAAGTAGA
TCTGGTTTCAGCATTGAAGCTGCGTGGCGACGGGCTATTGTACCATGGTT
ATATTAGTAGTAGTGGAGAAGACGCGCGCGTGATGATTATGAATGAAGGG
ATGCAAGTAAAAACCGCACTGTG

Coding sequence (CDS) from alignment at CM002460.1:498643..500415-

>rna3020 ID=rna3020|Name=rna3020|organism=Nannochloropsis gaditana|type=CDS|length=3102bp|location=Sequence derived from alignment at CM002460.1:498643..500415- (Nannochloropsis gaditana)
GAATCATGATTTGGAGGGCATGGACGAGTTTGCCACGGATGTGGAAAATC
TGCAAGCCTGGAAGAAAGTCTTTGGTCTTAATGCACCAACCTTCTGCCAT
CAAATAGGAGACAAGACTCTATGTGTGGGTCTGAGCACGACCCGTTTCCG
CTCCTCGCCCTTCTCCTCGCACGAAGTTTACATCCCGAAGGAGCAGACCA
TCTGGCTCGAAAATTTGCTTAAGCAACACCCCGAGGAAGAAGGGTGGCGG
GTGCTCGTGTTCAGTCACGCCCCGCCCATGGGAGCAGGCATCCGGGTGGT
CCAGAATGTGCACATCAAGAATGGTTGCGCCTTTTTGAATCATTCGAGCG
GCGACGAGGAACGACGTGTCTTCATCCGCCTCTGCAAACAGTATCACTGC
ATCAAGGCCTGGTTTTCGGGGCATTTCCACCTGTCCCACGACTACGAGGA
CTCCATTACGGCTAAGGAAGGCACTGTCTTTGTGCAAACGGGGGTCATGG
GCGAGAAGTCGACGAGGGACGGTCGGCGCCAGAGCCGAGTCGTGCGAGGA
GATGGGGCGGGCCTGCATGTGTACACTGTCAACCACCACAAGGGCGGGGA
GCTGCGCCTGGACGTTTCCATCCGTTACAAGCCAGGCGGAGAGGACCTGG
TGGAGGCGCACGGGCACGAGGACTACGCGCATGACAAGTGGTTCTCGGCG
TACCGACCCCAGGAGGAGGACGGGTGTTATCTGCAAAGTCCCGACGGGAT
TATTTTGGAGGCGAGCGACCGCGGGGGGGGTGAAAAGGTGTGCTGGTGGC
ACATGGCGGACGGGCGCGTGCTGGGGGTGCATGAGGGGCAAGTGATCGAG
TATGACGCCGAGACGCTCTCCCCGCTGGGAATCGTGGTGGATAGGGAGCA
GCTCCAGGGTCGAGAGATGGTGGTTGTCGGGGAGGGGCAGGCCTTGATTC
TCGTGTCCTCTCTGGACGCGCTCAACGAGAAGACCACGGCCGCGGACTAC
GACATCATCCACCCCAACCAGGACGGGAGTTACTGGCGGCGGTGGCAGCG
AAACAAGCTCGTGCGGCAGAGGGAGAAGGAGCGGGAGAAGATCGCAGCGG
ATTGGCTCAAGCAAAATTTCAAGTAGATGAGACCGACAACCCGTCTCTTC
ATTCCGTTTCTGCTTTCACTTGTCTCGCTGCCAAGCACGATATCATTTAT
TGGTCGTACTGCCTGTTCTTCGAAGTCGCAGCGAGCCCTGCGGAGAAGAG
AGGGCTCTCCCAAGGCCGTCGCTTTCAAGCCTCAGAAGGGTCTCGCGCAT
GACTTTTGCCTCGCAATTTTAGGGGATCTTCACTTGGACCCGACAGACAT
GAAGCTTCATAATGAAGGACGCAAGCATATCATAGATGTTATGGGGGGGA
TGAAAAAGTCGCTTTCCTCGAGCAAGTCGCAAGCTCACCTCATCAGTCTC
GGGGACCTAGGCGCATACGGCGAGGCAGGCACCACGGCTTGCTTCGAGCA
CGCAAAAGCTTACCTTGACGGCTTTCAATTGCCTTACAACCTCGTCACTG
GGAATCATGATTTGGAGGGCATGGACGAGTTTGCCACGGATGTGGAAAAT
CTGCAAGCCTGGAAGAAAGTCTTTGGTCTTAATGCACCAACCTTCTGCCA
TCAAATAGGAGACAAGACTCTATGTGTGGGTCTGAGCACGACCCGTTTCC
GCTCCTCGCCCTTCTCCTCGCACGAAGTTTACATCCCGAAGGAGCAGACC
ATCTGGCTCGAAAATTTGCTTAAGCAACACCCCGAGGAAGAAGGGTGGCG
GGTGCTCGTGTTCAGTCACGCCCCGCCCATGGGAGCAGGCATCCGGGTGG
TCCAGAATGTGCACATCAAGAATGGTTGCGCCTTTTTGAATCATTCGAGC
GGCGACGAGGAACGACGTGTCTTCATCCGCCTCTGCAAACAGTATCACTG
CATCAAGGCCTGGTTTTCGGGGCATTTCCACCTGTCCCACGACTACGAGG
ACTCCATTACGGCTAAGGAAGGCACTGTCTTTGTGCAAACGGGGGTCATG
GGCGAGAAGTCGACGAGGGACGGTCGGCGCCAGAGCCGAGTCGTGCGAGG
AGATGGGGCGGGCCTGCATGTGTACACTGTCAACCACCACAAGGGCGGGG
AGCTGCGCCTGGACGTTTCCATCCGTTACAAGCCAGGCGGAGAGGACCTG
GTGGAGGCGCACGGGCACGAGGACTACGCGCATGACAAGTGGTTCTCGGC
GTACCGACCCCAGGAGGAGGACGGGTGTTATCTGCAAAGTCCCGACGGGA
TTATTTTGGAGGCGAGCGACCGCGGGGGGGGTGAAAAGGTGTGCTGGTGG
CACATGGCGGACGGGCGCGTGCTGGGGGTGCATGAGGGGCAAGTGATCGA
GTATGACGCCGAGACGCTCTCCCCGCTGGGAATCGTGGTGGATAGGGAGC
AGCTCCAGGGTCGAGAGATGGTGGTTGTCGGGGAGGGGCAGGCCTTGATT
CTCGTGTCCTCTCTGGACGCGCTCAACGAGAAGACCACGGCCGCGGACTA
CGACATCATCCACCCCAACCAGGACGGGAGTTACTGGCGGCGGTGGCAGC
GAAACAAGCTCGTGCGGCAGAGGGAGAAGGAGCGGGAGAAGATCGCAGCG
GATTGGCTCAAGCAAAATTTCAAGTAGATGAGACCGACAACCCGTCTCTT
CATTCCGTTTCTGCTTTCACTTGTCTCGCTGCCAAGCACGATATCATTTA
TTGGTCGTACTGCCTGTTCTTCGAAGTCGCAGCGAGCCCTGCGGAGAAGA
GAGGGCTCTCCCAAGGCCGTCGCTTTCAAGCCTCAGAAGGGTCTCGCGCA
TGACTTTTGCCTCGCAATTTTAGGGGATCTTCACTTGGACCCGACAGACA
TGAAGCTTCATAATGAAGGACGCAAGCATATCATAGATGTTATGGGGGGG
ATGAAAAAGTCGCTTTCCTCGAGCAAGTCGCAAGCTCACCTCATCAGTCT
CGGGGACCTAGGCGCATACGGCGAGGCAGGCACCACGGCTTGCTTCGAGC
ACGCAAAAGCTTACCTTGACGGCTTTCAATTGCCTTACAACCTCGTCACT
GG

Synonyms

Publications