rna3019, rna3019 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3019
Unique Name	rna3019
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1938
Alignment location	CM002460.1:496642..498639 +

Link to JBrowse

Properties


Property Name	Value
Product	methylmalonate-semialdehyde dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100125g3.428.mrna
Orig protein id	gnl\|cribi\|Naga_100125g3.428
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:496642..498639 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100125g3	gene2898	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3019	rna3019-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27665.1	cds3011	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:496642..498639+
coding sequence from alignment at CM002460.1:496642..498639+

mRNA sequence

>rna3019 ID=rna3019|Name=rna3019|organism=Nannochloropsis gaditana|type=mRNA|length=1938bp
ATGTCATGCCAGCGCGCAGAAAAATTCACTCTATACGCACACACATCTCT
CGCAGGCGTAAGGCTACCTCTCTACCTGCTGCAAAAGTCCGCTGTGCGGT
CGCTGTGGGATTTGTCAAGAGGACCAATTCGCTCGTTTGCTGCTTACCGA
GGTCGACCAATCAGCTGCACTTCTGTCACCATGTGCCCCCTGCGCGTGTT
TTTCGCATTGCTTCAGCTCCATATCCTATGTGTTTTCGGCTTGGGAGGGT
ACGCCTCTTCTGCCGGAGACGCTCGGGCAACCGGCCGCAACTGTCCTTTC
CGGGGCTGGGCAGTGGGTAAGACCTCTGCAAACACAGCCACGAGTTCATG
TGCTTTCGTGGCACCATCCCCGCCTTCTCGCAGCGCAGCCGCGCTCTCAT
CGACCACAAGCGAGGTTGCGGGGCCGTCATCGGAAGGGGGTTTCCGGACC
TCCATGGGGCTGTTTGTGGCACCCACTACCGGACACACGGCGCACTCGTT
GTCCCGGAGGCGCCGCGTCGGCCCCGCGCTGAAGCCGCTCTACGCCGCCA
CTGTGGCTGCCCCGACTGCCAGCATCCCTGCAGATGCGATCGCGGCTGCA
GCGGAGAAAAAGGAGAAGGAGGCGAACAAGAAGAAGCGCAAGGCGACTTC
CATGACCCCCTTGGAAGTGCACGTGATCGGCCTTTCTCACCACAACGCGG
CGGTGGAGGTGCGGGAGAAGCTGTCCATCCCGGAGGCCCAGTGGAACGAG
GCGGCCAACAAGCTCTGCGAGAGCGGGGTCATAGCAGAGGCCTGCACGTT
GTCGACATGCAACCGCTTTGAGATCTACTTCGCGGCCCACGACTCGTACG
CCGCCTTCCACGAGGCCACCGCCTTCCTGGAGCGGCACTCGGGCCTGCCG
CAGAGCGTGCTGCGGAAGAACTTGTTCCTCCTGTCGGGAGAGGACGCGAT
CTGGCACCTGATGCGGGTCTCGGGGGGCCTGGACTCCCTGGTGGTGGGGG
AGGGACAGATCCTCAGCCAGGTGAAGCAGTGTTACAACCACGGAATGGAG
GAGGACGGAAAGGGTGGTAAGGTCATCTCTCGGATGTTGAACTCGGCGGT
GGCGGCTGGGAAGCGCGTGCGGTCCGAGACGGGCATCAGCAAGGGGGCCG
TCTCCATCTCTTCGGCGGCCGTTGAATTCTCGCAGCTCCGGTGCCCCAAG
GACCTGGGCAAGCCCTTCGAGGACAGCCGCGTGGCCATTGTGGGCGCGGG
CAAGATGTCGCGCCTCCTGATGATCCACATGGCCTCCCAGGGGGTCAAGG
CAGTGACGCTCATGAACCGAGGGCGCGAGAGAGCCGAGACCCTGGCGGCG
GAGTTCCCAGAGATGGAGGTGGCGGTGCGGCTCATGGACGACCTCTGGCC
GGTCATGCACACCCACGACGTCGTCTATACCTCCACGTCGGCGCAGGGCT
GCCTTCTGACCAAGGACAACATCCAGGCCTCGGGACTGGCCCCCGGGAAG
GTGATAGTTGACATATCGGTGCCGCGCAACGTGGAGACGGAGGTGAGCGA
GATTGAGGGCATGTTCGCCTACAACGTAGACCATCTGAAGGAGGTGGTGG
ACCGGAATACGGCCATGCGCAAGAAGCAGATGCTGGAGGCAGAGGACCTG
CTGGTGGAGGAGATGGAGAAATTTCGCTCGTGGCAGTTCTCCCTGGGGGC
TGTCCCGGCTCTGATGAAGCTGCAGGAGAAGGCGGAGACGATGCGCATGG
AAGAGCTGAAGAAGGCATCCAAGAAACTGAACAACCTTTCAGAAAAGGAG
CTTCAGACTGTGGAACGGCTCACGAAAGGGATCGTTAACAAGCTTCTGCA
CGGACCAATGTCGCACTTGCGGGCTACGGAGGATCTGGAGAAGAACCTCG
TGGCACTCAAGACGCTGAAAGCCGTCTTCGAGCTGTGA

protein sequence of rna3019

>rna3019-protein ID=rna3019-protein|Name=rna3019|organism=Nannochloropsis gaditana|type=polypeptide|length=537bp
MTVFPPLFFQGHGSGGMIVCENFVDGQYQTSKGDYLPVKSPTDGVQIGKV
YLSDASDVSTAVACAQRAFPAWSGMTMKARASIMFRFQHLMEQHAEELAL
LVVRENGKNLAEARASVAKGNETVEWACGLPQMAQGKLLQVSRGVTCCDM
REAIGVVVSVCPLNFPIMCPMWTIPIALTAGNCLILKPSEKVPLTMHRVA
ALLHEAGVPPGVFQTVNGQVEAVNALIDHPLVRGVTFVGSSRVAEVVAER
ASRLNKRVLAMGGAKNHLVALPDCHVESASSDIVASFAGCAGQRCMAATV
LILIGEQASLLEAVIRKAGALTPGVEPGQVGAIIDAISQERILRYIDEAE
KQGVTLLLDGRGWAQAAKAGTWVGPTILLHTRADDEAMREEIFGPVLSVI
RVATWEEALAIEASNPHGNAACVYTTVGAHAQFFETRFRAGMIGVNVGVP
VPREPFSFGGLFGTRSKYGSMVDITGEGCLEFMTNKRKITSKWAFPEGES
NGAGGRAAPLAEGGKKELDQGVRQAHAPDRASFVGAM

mRNA from alignment at CM002460.1:496642..498639+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3019 ID=rna3019|Name=rna3019|organism=Nannochloropsis gaditana|type=mRNA|length=1998bp|location=Sequence derived from alignment at CM002460.1:496642..498639+ (Nannochloropsis gaditana)
CCGGGGCCGGTGCGACGCGATTACGGTCGACCTCCACTGCCATCGCCAAG
ATAATGCACTTGCCCGAGTGTGTTGTGTTTCCTGCGCGTTCATGGGCTAA
GGCCGATGCCAAGTAGTGTGGTTTCATAGTCCGGATTCGGTGCGCGTCTG
GTGTGGAAGGCGACGCCCTCATAAACGTGACTGCGCAATATTTGTGCCAA
TGAcagtcttcccccctctattTTTCCAAGGTCACGGTTCTGGCGGCATG
ATAGTGTGCGAAAATTTTGTAGATGGGCAGTACCAGACTTCAAAAGGGGA
CTACCTCCCTGTAAAATCACCCACTGATGGCGTCCAAATCGGCAAAGTGT
ACCTGTCAGACGCTTCCGATGTAAGTACAGCGGTGGCGTGCGCTCAACGT
GCGTTCCCAGCGTGGAGTGGGATGACGATGAAGGCGCGGGCCAGCATAAT
GTTTCGGTTTCAGCACCTGATGGAGCAGCATGCCGAGGAACTTGCCCTCT
TGGTCGTGCGTGAGAATGGGAAAAATTtggcggaggcacgggcGTCAGTG
GCGAAAGGCAATGAGACGGTGGAGTGGGCCTGTGGATTACCCCAGATGGC
GCAAGGGAAATTGCTTCAGGTTTCGCGCGGTGTGACCTGTTGCGACATGC
GTGAGGCCATCGGCGTGGTTGTGAGCGTCTGTCCTCTCAACTTCCCGATC
ATGTGCCCGATGTGGACCATCCCCATCGCCCTAACCGCGGGGAACTGCCT
GATTCTGAAGCCCTCCGAGAAGGTCCCCCTGACCATGCACCGTGTCGCCG
CCCTTCTCCACGAGGCCGGCGTCCCGCCCGGCGTCTTTCAGACCGTGAAC
GGACAGGTGGAGGCAGTCAATGCCTTGATCGACCACCCCTTGGTTCGCGG
GGTCACCTTCGTTGGCTCCTCCCGCGTGgccgaggtggtggcggagcgGG
CGAGTCGGCTCAACAAGCGGGTGCTGGCCATGGGCGGGGCCAAGAACCAC
CTCGTCGCCCTGCCGGACTGCCACGTGGAAAGCGCTTCCAGTGACATTGT
GGCGAGCTTCGCCGGCTGTGCCGGTCAAAGGTGCATGGTCAGTgttgccc
ctcctctgtttTGTGGCGACGGCTCGAACGACGcggccttccccttgctt
tctctccAGCTCTGAACCCTTTGACCCCTCCCTGAAATTTTGACCGATTG
ATCCATTTCTCTCCCCCGGCAGGCGGCCACCGTCCTGATCCTGATCGGAG
AacaggcctccctcctggaggCCGTCATCCGCAAGGCAGGGGCCCTGACG
CCGGGCGTGGAGCCGGGGCAAGTGGGAGCGATCATCGATGCTATATCCCA
GGAGCGCATTCTCCGCTACATcgacgaggcagagaaaCAAGGAGTCACAC
TCTTGCTGGACGGGCGTGGTTGGGCTCAGGCGGCGAAGGCAGGGACCTGG
GTGGGCCCGACCATTCTCCTCCACACGCgcgcggacgacgaggctATGCG
GGAGGAAATATTCGGTCCTGTCCTCTCTGTGATCCGCGTGGCcacctggg
aggaggcgctggccatCGAGGCCTCGAATCCGCACGGAAATGCCGCCTGC
GTCTACACTACTGTGGGTGCACATGCTCAGTTCTTCGAGACGAGGTTCAG
GGCCGGCATGATCGGTGTCAACGTGGGCGTGCCCGTACCTCGGGAACCTT
TCTCTTTCGGGGGACTCTTCGGGACGCGCAGCAAGTACGGGAGCATGGTG
GACATCACGGGCGAAGGCTGCTTGGAGTTCATGACGAACAAGCGCAAGAT
TACCAGCAAGTGGGCATTTCCTGAGGGCGAGAGCAACGGTGCTGGTGGTA
GGGCGGCACccctggcggaggggggTAAGAAAGAATTAGATCAGGGAGTG
CGCCAGGCGCACGCACCTGACCGGGCCAGTTTCGTTGGTGCCATGTAAAG
TCCGACAATGAGGGATataatgaaaaaaaatgttcgAATATAGTTGTG

Coding sequence (CDS) from alignment at CM002460.1:496642..498639+

>rna3019 ID=rna3019|Name=rna3019|organism=Nannochloropsis gaditana|type=CDS|length=3228bp|location=Sequence derived from alignment at CM002460.1:496642..498639+ (Nannochloropsis gaditana)
ATGAcagtcttcccccctctattTTTCCAAGGTCACGGTTCTGGCGGCAT
GATAGTGTGCGAAAATTTTGTAGATGGGCAGTACCAGACTTCAAAAGGGG
ACTACCTCCCTGTAAAATCACCCACTGATGGCGTCCAAATCGGCAAAGTG
TACCTGTCAGACGCTTCCGATGTAAGTACAGCGGTGGCGTGCGCTCAACG
TGCGTTCCCAGCGTGGAGTGGGATGACGATGAAGGCGCGGGCCAGCATAA
TGTTTCGGTTTCAGCACCTGATGGAGCAGCATGCCGAGGAACTTGCCCTC
TTGGTCGTGCGTGAGAATGGGAAAAATTtggcggaggcacgggcGTCAGT
GGCGAAAGGCAATGAGACGGTGGAGTGGGCCTGTGGATTACCCCAGATGG
CGCAAGGGAAATTGCTTCAGGTTTCGCGCGGTGTGACCTGTTGCGACATG
CGTGAGGCCATCGGCGTGGTTGTGAGCGTCTGTCCTCTCAACTTCCCGAT
CATGTGCCCGATGTGGACCATCCCCATCGCCCTAACCGCGGGGAACTGCC
TGATTCTGAAGCCCTCCGAGAAGGTCCCCCTGACCATGCACCGTGTCGCC
GCCCTTCTCCACGAGGCCGGCGTCCCGCCCGGCGTCTTTCAGACCGTGAA
CGGACAGGTGGAGGCAGTCAATGCCTTGATCGACCACCCCTTGGTTCGCG
GGGTCACCTTCGTTGGCTCCTCCCGCGTGgccgaggtggtggcggagcgG
GCGAGTCGGCTCAACAAGCGGGTGCTGGCCATGGGCGGGGCCAAGAACCA
CCTCGTCGCCCTGCCGGACTGCCACGTGGAAAGCGCTTCCAGTGACATTG
TGGCGAGCTTCGCCGGCTGTGCCGGTCAAAGGTGCATGGCGGCCACCGTC
CTGATCCTGATCGGAGAacaggcctccctcctggaggCCGTCATCCGCAA
GGCAGGGGCCCTGACGCCGGGCGTGGAGCCGGGGCAAGTGGGAGCGATCA
TCGATGCTATATCCCAGGAGCGCATTCTCCGCTACATcgacgaggcagag
aaaCAAGGAGTCACACTCTTGCTGGACGGGCGTGGTTGGGCTCAGGCGGC
GAAGGCAGGGACCTGGGTGGGCCCGACCATTCTCCTCCACACGCgcgcgg
acgacgaggctATGCGGGAGGAAATATTCGGTCCTGTCCTCTCTGTGATC
CGCGTGGCcacctgggaggaggcgctggccatCGAGGCCTCGAATCCGCA
CGGAAATGCCGCCTGCGTCTACACTACTGTGGGTGCACATGCTCAGTTCT
TCGAGACGAGGTTCAGGGCCGGCATGATCGGTGTCAACGTGGGCGTGCCC
GTACCTCGGGAACCTTTCTCTTTCGGGGGACTCTTCGGGACGCGCAGCAA
GTACGGGAGCATGGTGGACATCACGGGCGAAGGCTGCTTGGAGTTCATGA
CGAACAAGCGCAAGATTACCAGCAAGTGGGCATTTCCTGAGGGCGAGAGC
AACGGTGCTGGTGGTAGGGCGGCACccctggcggaggggggTAAGAAAGA
ATTAGATCAGGGAGTGCGCCAGGCGCACGCACCTGACCGGGCCAGTTTCG
TTGGTGCCATGTAAATGAcagtcttcccccctctattTTTCCAAGGTCAC
GGTTCTGGCGGCATGATAGTGTGCGAAAATTTTGTAGATGGGCAGTACCA
GACTTCAAAAGGGGACTACCTCCCTGTAAAATCACCCACTGATGGCGTCC
AAATCGGCAAAGTGTACCTGTCAGACGCTTCCGATGTAAGTACAGCGGTG
GCGTGCGCTCAACGTGCGTTCCCAGCGTGGAGTGGGATGACGATGAAGGC
GCGGGCCAGCATAATGTTTCGGTTTCAGCACCTGATGGAGCAGCATGCCG
AGGAACTTGCCCTCTTGGTCGTGCGTGAGAATGGGAAAAATTtggcggag
gcacgggcGTCAGTGGCGAAAGGCAATGAGACGGTGGAGTGGGCCTGTGG
ATTACCCCAGATGGCGCAAGGGAAATTGCTTCAGGTTTCGCGCGGTGTGA
CCTGTTGCGACATGCGTGAGGCCATCGGCGTGGTTGTGAGCGTCTGTCCT
CTCAACTTCCCGATCATGTGCCCGATGTGGACCATCCCCATCGCCCTAAC
CGCGGGGAACTGCCTGATTCTGAAGCCCTCCGAGAAGGTCCCCCTGACCA
TGCACCGTGTCGCCGCCCTTCTCCACGAGGCCGGCGTCCCGCCCGGCGTC
TTTCAGACCGTGAACGGACAGGTGGAGGCAGTCAATGCCTTGATCGACCA
CCCCTTGGTTCGCGGGGTCACCTTCGTTGGCTCCTCCCGCGTGgccgagg
tggtggcggagcgGGCGAGTCGGCTCAACAAGCGGGTGCTGGCCATGGGC
GGGGCCAAGAACCACCTCGTCGCCCTGCCGGACTGCCACGTGGAAAGCGC
TTCCAGTGACATTGTGGCGAGCTTCGCCGGCTGTGCCGGTCAAAGGTGCA
TGGCGGCCACCGTCCTGATCCTGATCGGAGAacaggcctccctcctggag
gCCGTCATCCGCAAGGCAGGGGCCCTGACGCCGGGCGTGGAGCCGGGGCA
AGTGGGAGCGATCATCGATGCTATATCCCAGGAGCGCATTCTCCGCTACA
TcgacgaggcagagaaaCAAGGAGTCACACTCTTGCTGGACGGGCGTGGT
TGGGCTCAGGCGGCGAAGGCAGGGACCTGGGTGGGCCCGACCATTCTCCT
CCACACGCgcgcggacgacgaggctATGCGGGAGGAAATATTCGGTCCTG
TCCTCTCTGTGATCCGCGTGGCcacctgggaggaggcgctggccatCGAG
GCCTCGAATCCGCACGGAAATGCCGCCTGCGTCTACACTACTGTGGGTGC
ACATGCTCAGTTCTTCGAGACGAGGTTCAGGGCCGGCATGATCGGTGTCA
ACGTGGGCGTGCCCGTACCTCGGGAACCTTTCTCTTTCGGGGGACTCTTC
GGGACGCGCAGCAAGTACGGGAGCATGGTGGACATCACGGGCGAAGGCTG
CTTGGAGTTCATGACGAACAAGCGCAAGATTACCAGCAAGTGGGCATTTC
CTGAGGGCGAGAGCAACGGTGCTGGTGGTAGGGCGGCACccctggcggag
gggggTAAGAAAGAATTAGATCAGGGAGTGCGCCAGGCGCACGCACCTGA
CCGGGCCAGTTTCGTTGGTGCCATGTAA

Synonyms

Publications