rna3010, rna3010 (mRNA) Nannochloropsis gaditana

Overview
Namerna3010
Unique Namerna3010
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1099
Alignment locationCM002460.1:468709..469228 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100125g13.433.mrna
Orig protein idgnl|cribi|Naga_100125g13.433
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:468709..469228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100125g13gene2889Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3010rna3010-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27670.1cds3002Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3010 ID=rna3010|Name=rna3010|organism=Nannochloropsis gaditana|type=mRNA|length=1099bp
AAGACACCGTACCAGTGCCTCCCCTCTTTCTGCACTCACACTCCCCGGAC
AATCGTGCCCCCCCTCCCGAAGCACCGGGACGAAGGTTATGTGGGACGGG
TGGGTTGGATTCAGTGGAAGGAAGCGAAATTAGTAAGATGGATGGCGGGG
CAAGATGCAGGGCAATGTAGATGAACGACCTTCGCTGAGGCCTCCCTCGT
AAGTGGAGGAGAGGCAGGCCTCAGGAATGGCTGGCCTGCTGCCAGGCTGT
CTTGCCAAGGCGTCCACTCTATGGAAGCTTTGGCTGTGTACACTGGTGCT
GACATGCTTGTGTCTTTGCCAATGGGCGCCGCCTTTTTGCTGTGCTTTTA
CCCGCAGCACTGGAAAAAGACGGGAAGACAAAGGCTGACCGACACTCCGT
TTCCCTACCACACATGACAATCATGCAGGAGAGTTTACTTCTTCTTTGTT
TTGAAAATGCCTTCGAGGCTCTCCAAGAACCGAAAAAAGCGAGGACATGT
CAGCGCAGGCCACGGCCGCATTGGCAAGCATCGCAAGCATCCGGGTGGGC
GGGGTAACGCCGGTGGTCAACACCACCATCGCATCCTGATGGATAAATAT
CACCCTGGGTACTTCGGTAAGGTGGGGATGCGGCACTTCCACGTCCTGAA
GAACCGGACCTACACCAAGGCCGTCAACGTGGACAAGCTCTGGTCGCTGT
TGGGGGCCGAGGCGTACGAGGCGGCGAAGGCGGGCGGAGGGGACAAGGCC
CCGGTGCTGGATGTGACACAGATGGGGTTCTTCAAGGTGCTTGGAAAAGG
GAAGCTGCCCTCCGTGCCCCTGGTCGTGAAGGCCAAGTACTTCTCGAAGG
ACGCGGAGAAAAAGATCAGGGAGGCCGGGGGAGCCACGCTCCTAACCGCG
TAAATAGAGGGAGGACGCCAGAGATAGGTGCTTTGGAGTGAGGAAGTCAT
GCCTCGGGGTCGAGGGCTGGTGGGAAGGGTGACGTGTGGGTAGAAGGAAC
TCAGCTTACACGACAGCACCGAGTAAAGAAGCAAAGGATCGCACTGGGCA
AGGAAGGGGAAACAATTGCCAGTCTTTTGAATCGCAGTCATGGTTTTGC
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protein sequence of rna3010

>rna3010-protein ID=rna3010-protein|Name=rna3010|organism=Nannochloropsis gaditana|type=polypeptide|length=98bp
MGLPTAQAKTFDVILTGKVMPDRPRISRHQGTSKRRALRRERERQTKKCF
SSDDWEKVQLTDFAFRKLESVSPRNYKLELQGVWKQQTSNTTDNSVTK
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mRNA from alignment at CM002460.1:468709..469228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3010 ID=rna3010|Name=rna3010|organism=Nannochloropsis gaditana|type=mRNA|length=520bp|location=Sequence derived from alignment at CM002460.1:468709..469228+ (Nannochloropsis gaditana)
ATGGGTCTGCCCACCGCGCAAGCGAAGACATTCGATGTTATATTGACTGG
GAAAGTAATGCCGGATCGGCCTCGCAGTTCGACACTTGAGCTCGTATCCA
TTATGGTGAGGCTAGGCGATTAACGGGGACGCAAAAATGAATTTAATTTC
GTACCCGTTGCACAGGTCGTGCTCGACCTGCTTCACACTGAAGTGCTTTC
AAGTCGAAGTGGGGGTGTGAAAAGGGTGCGGATGGCTCATCTTCAACGTC
GCCTTGAGTATCACGGCACCAAGGAACTTCGAAAAGGCGCGCTctgagga
gagagcgagagaGACAGACCAAAAAATGCTTTTCGAGCGATGACTGGGAA
AAAGTGCAGCTAACAGATTTCGCATTCAGGAAATTGGAGTCAGTATCTCC
TCGAAATTATAAGGTTATGTCCACTAGTTCCTCTTCATAATGCTTTTGTC
GAAGCTTGAATTGCAAGGGGTGTGGAAACAACAGACGTCAAACACCACTG
ATAACTCTGTCACGAAATAA
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Coding sequence (CDS) from alignment at CM002460.1:468709..469228+

>rna3010 ID=rna3010|Name=rna3010|organism=Nannochloropsis gaditana|type=CDS|length=891bp|location=Sequence derived from alignment at CM002460.1:468709..469228+ (Nannochloropsis gaditana)
ATGGGTCTGCCCACCGCGCAAGCGAAGACATTCGATGTTATATTGACTGG
GAAAGTAATGCCGGATCGGCCTCGCATATCACGGCACCAAGGAACTTCGA
AAAGGCGCGCTctgaggagagagcgagagaGACAGACCAAAAAATGCTTT
TCGAGCGATGACTGGGAAAAAGTGCAGCTAACAGATTTCGCATTCAGGAA
ATTGGAGTCAGTATCTCCTCGAAATTATAAGCTTGAATTGCAAGGGGTGT
GGAAACAACAGACGTCAAACACCACTGATAACTCTGTCACGAAATAAATG
GGTCTGCCCACCGCGCAAGCGAAGACATTCGATGTTATATTGACTGGGAA
AGTAATGCCGGATCGGCCTCGCATATCACGGCACCAAGGAACTTCGAAAA
GGCGCGCTctgaggagagagcgagagaGACAGACCAAAAAATGCTTTTCG
AGCGATGACTGGGAAAAAGTGCAGCTAACAGATTTCGCATTCAGGAAATT
GGAGTCAGTATCTCCTCGAAATTATAAGCTTGAATTGCAAGGGGTGTGGA
AACAACAGACGTCAAACACCACTGATAACTCTGTCACGAAATAAATGGGT
CTGCCCACCGCGCAAGCGAAGACATTCGATGTTATATTGACTGGGAAAGT
AATGCCGGATCGGCCTCGCATATCACGGCACCAAGGAACTTCGAAAAGGC
GCGCTctgaggagagagcgagagaGACAGACCAAAAAATGCTTTTCGAGC
GATGACTGGGAAAAAGTGCAGCTAACAGATTTCGCATTCAGGAAATTGGA
GTCAGTATCTCCTCGAAATTATAAGCTTGAATTGCAAGGGGTGTGGAAAC
AACAGACGTCAAACACCACTGATAACTCTGTCACGAAATAA
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Synonyms
Publications