rna3007, rna3007 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3007
Unique Name	rna3007
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3424
Alignment location	CM002460.1:461548..463061 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100125g18.424.mrna
Orig protein id	gnl\|cribi\|Naga_100125g18.424
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:461548..463061 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100125g18	gene2886	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3007	rna3007-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27661.1	cds2999	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:461548..463061+
coding sequence from alignment at CM002460.1:461548..463061+

mRNA sequence

>rna3007 ID=rna3007|Name=rna3007|organism=Nannochloropsis gaditana|type=mRNA|length=3424bp
GAGCTATGTTTCAGTGATTCAAGGCAACAAAACTCACACCCTTTGTCACC
ATTCATATGAACAGACATAAAGGGTGCCATGGCACCATTTCATTCGTGAC
TTCTGACCCTAGCAGTTCGCAGAACTTCATCCTCCTTCTCTCAGTCGCTG
TTCCATGACCACTTGACCCCTTCTGGAGGAGGAATGCACCGATTATTGCG
TAGTCCAGCTGCAGACAGGGCGTCGTCAACCGGCACAACACAATTGTCTA
CCCTTGACACTCTCAAAAGTTCTGCATACCCACCCATATGCGGGAACCTA
AGCAGCGAAGTATCGGGGGGTAGCTATGTGGTAGTCGAGGCTTGCGTCAA
GACGGGGGCAGTCCTGCTCGTTCTTCTTTACATGTACCATCGCAGACGCT
CTGTCGAATCTCCCTCTTCCTCGTCTATATTATCAGCATTGAACAGGTCC
GCGGGGCAGGGTGGTGCCAGCACATCGTTGATCTTCCCTTTTTATAACTC
TCTCTTCTACGCCACGGCCTGCGTGGACGTGCTCACGGTTGCGCTCTCCC
TCACGTTTGGCGGGCATCTGCCCCCGGCAATAGCGGCGCTTTGCTGGGCA
CTGAACCGACTGATCACGGAGGGACTCACGATCTTCCTCTTGCACCACGG
GGTGGGCCTGGCGACTCTTCAGTACAGCTTTACGTATGCCGTCATGTGGG
CGCTTGTCTCCTTTTTGGCGTGGTACTGCGTGCCCCTGCTCAGGGCCGAT
GGGAATGCCAACGTAGTCGGGGACGTGTTGGCCCTTCTCTACCTGACGCC
CCCCCTCATCGGCTACCTGCTGCTCTCCTTCGCCCCCATGAAGGTCCTCC
CGCGTCGCCCGGCCGTCCTCCCCGTCGCCCTCTTCATGTCCGCCGTCTTC
GCCGCCCTGGCACTCCGGGAGGCGCTTTTGGCCACCCACTCTTTCCTCCC
GGGACCCTGCCTCCTGTGGAGCGCCTGGTCCCTCCTCCTGTGGGCCTGCT
TCCCCTGGGTGGTGTACCATGCCCTGGTCGCGGACACGCGCTGGTGGCAA
GGCCTCTACCAGAACCCGCGCGGGTGGGCGGGGAACCTGAACACCCCCCT
CCTCGACGTCTGGAGCGACGGGCTGCTGGACGTTCCTGCCTCGGAGCTAG
CCACCCTCATGCACGAGCTGGAGACGGAGCCCGGGGCCGGCCTTCCCGCC
TCCGTCCACGGCCCCTCCAGCCCTGCTTCCTCTCCCTCGCCCAGGCCCTC
CCCACCCGCCGACGCCGGCCCCGCCCTTGTCGCCTCTGGGCGCGTCCCCA
TCGTCCCCTTCGGCCAGCTTCGGCTGCGGACGGACTTGCGCTACCGGTCG
GGCAGCAACTCGCGCGTCTATGTCGGGGAGTGGCACGGGCGGCGGGTGGC
TGTGAAGATGCTTTTCTCGATGGAACTCGATAGGGCCATTCTCCAGGCCT
TCGTGCAGGAGGCCCGCCTTTTGTACGGCCTGCGGCGACACCCCAACATC
CTACGGTGTCTGGGCGTGGCCATCATGCCTCCCGCTGCCTGCTTGGTCAC
CGAGTTCTGCGAGCACGGGTCGCTCTTCGACTTCCTCCGCCGGTTCCGGC
AGCAAGAGCTGAGCCGGGAGCGGCAGCGAAGGTGTCGGCTGCGTCCAGCA
GAGGAGCCGAGGCGAGGGCAAGCGCGACGAAGACCCCAGGTTCTGACAAA
AACAGGCGGGAACGGGGAAGCGGAGGCTCCTGTGAACGACTGTGCCAAGG
GGGAGATAGCGAAGGAGGAGGAGGGAGAGGAGGAAGAGAAGGAAGAGGAG
GAGGACGGGGGGGAGGAAGAGGAGGAAGAGGGGGCTGACACCGAGTTGCT
GCTGGAGAAGGCGCAACGCGCACGGACGAGGGGCTCTTTGGAGCCCAACG
GGCTGGAGCCCCCCCTGCCCTCCCAGCTGCCCCTCTCACGCCGGCTGGAG
CTTATGGTGGAGTGCGCGGCCGGGGTCTGCCACCTGCACGCCCGGGGACT
GGTCCACGGGGACATCAAGTCCCTGAACTTTCTGGTCGACCGGACGCTGG
CGGTCAAGCTGGGCGACGTGGGGGAGTGCAGGCAGGCGGGATGCGTGCCG
GAGGGCGGCTTGCCGATCTTCCCTAGCACCATCAATTGGGCGCCACCGGA
GGTTTTGGCGGGAAGCGCCAGGCGGTATCACCCCTCCATGGACGTGTATT
CCCTGGGTCTGGTCCTGCACGAGCTCATGACCCTGGAGGCGCCTTTCCAC
CACGAGCCTTTCACTAGGCGCCGGTCTCAGGACCTTGTACAGCACATCAT
CCAAGGCGGGCGGCCCTCTTTCCACCGTGGGAGGCTCGCGAACGCGGACG
GAGATGGAGGAAATGGAGAAGACTCCCGTCTGTCCCTTCCCGTCCCACCC
TCTCTCCAGAAACTCCTTCATCAGTGCTGGCGGGCCGATCCAGCCCAGCG
GCCTTCGGCGTCTCAGGTTCACGACCATCTTGTTGAACTTCTGAGGGGTA
CCGAGGAGGTCAAAGGGGTCTAGGGACGGGAGCTGAGGATAAACCGAGGG
GCTAAAGCCTTGTGCGTCACTGCTTATACGCTGTGAATATTTGAAGACAT
TTCATATAAAACGATGTACAGAAATTAAATAACCTCGATACATTCCAATG
GACATGCTTTCGCGAGGCATTTCAATACGACCGTTCTGATAATTCGATGC
AGCGGGTTCAGCGGATAGAGCCTTAGTTTGCACTTCATTGAAAATACCCT
TTACAAGTCAATTTTAGTCTTTGTACCTACCATGCCAAGCGTCACTAAGG
TTTTTGCGTACCTGAAAGAAACCGCGCAAGGCTAGGGCGGTCGGGGCAGT
AACCTCCTTCCCCGACTCCCCGCTGGCCGTCCGCTCCGTCCTGACCCTCT
CTGCATTCTCTCCGGCTCATGTTTGTTATTTTTTTGGGTACTTACGTCTT
CTACAACGTTTGTTAACAATTAAGCAGTGGAACGTGGGCCATTTGCGCGG
GCAGCATAGCAATAAGGGTTGTCACACCATCAAACTTCTGCAACGGGCAG
CCCTCCCCCTCATGTCCTCGCTCCTCCTTGGCAGTGGCAATACGAGAACG
ACCGCCTTGCGTCGAGGTCCCTACAACCGCACGCGTGAAGATAAAAAAGC
AGCTTACTGCCAGAAATGCAATGCACCCGGCCATTGGACCTACGAATGTA
AGAGTGCCCGGCACTACCAGAAACGAGTAAGCAAGAGCGCCATTCTCGAG
CATCCTGAGCTCCAACCTTCTTTTTCGCTGGAGGTACCTCCAGGATATAT
GACCAAGGAAGATAAAACAGCCAAAATGTTGGGAAAGGTGGGGGATGAGC
GAGAGAAAGCCAAAGGCGCAAAGACGTCCGATAAGAAACGAACCGGGAAG
CGCCGTCGGTCTCCCTCCTCCTCC

protein sequence of rna3007

>rna3007-protein ID=rna3007-protein|Name=rna3007|organism=Nannochloropsis gaditana|type=polypeptide|length=204bp
MLLRYLVIMLAMSPSCAFILGCRTSSLCRFSTVLPLQMSNNWFTDSSGES
LISDDKLKFVHEFIDNKGKNVVRGPAQVKVPDGRVLDVLPGEEVEIIGGL
VYRTYTNGFPPVNEARLREEGQVVLEIKWNENWETQGFTLEVMGVTGSSC
VEYTNRFCEATGCRQNGPMVVKPAYFEVPVSVTQNEGVVEKLRQVQLGTA
RIEF

mRNA from alignment at CM002460.1:461548..463061+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3007 ID=rna3007|Name=rna3007|organism=Nannochloropsis gaditana|type=mRNA|length=1514bp|location=Sequence derived from alignment at CM002460.1:461548..463061+ (Nannochloropsis gaditana)
GCGTCTGCGATGGTACATGTAAAGAAGAACGAGCAGGACTGCCCCCGTCT
TGACGCAAGCCTCGACTACCACATAGCTACCCCCCGATACTTCGCTGCTT
AGGTTCCCGCATATGGGTGGGTATGCAGAACTTTTGAGAGTGTCAAGGGT
AGACAATTGTGTTGTGCCGGTTGACGACGCCCTGTCTGCAGCTGGACTAC
GCAATAATCGgtgcattcctcctccagaaggGGTCAAGTGGTCATGGAAC
AGCGActgagagaaggaggatgaagttCTGCGAACTGCTAGGGTCAGAAG
TCACGAATGAAATGGTGCCATGGCACCCTTTATGTCTGTTCATATGAATG
GTGACAAAGGGTGTGAGTTTTGTTGCCTTGAATCACTGAAACATAGCTCG
GGAACGGGACGGCAGCTTTCGGCTTGACGGGGCGTATCCCGACCCCGGGC
GAGAAAGCTCAGGCACGCGCATTTTCAGAATGCAAATTAAAGTTTTACAC
TTCGACGGGAGGCCTTCAAGATAATGAAGTACATGGCTTGAACATGTTTT
AGACAGTTTGTGTGAGTGATATCGTTCGGCTCTTTCTCGGCACGACTTAA
TACTTTTTTTCCGGTTGCCTTCACTTTCATGCACAGGGCTTCTTTGTTCC
GTCGCGCTCAGACCCAGCCTTCCTTGACAGGTCCTCGCAATCCCATATCA
TCATGCTGCTGCGCTATCTCGTTATAATGCTAGCTATGTCTCCAAGTTGC
GCCTTTATACTTGGGTGTCGCACGTCTTCTCTTTGCCGCTTCTCGACTGT
ACTGCCGTTGCAAATGAGTAATAACTGGTTTACTGACAGCAGCGGGGAAT
CACTTATTTCGGACGACAAACTAAAATTCGTACATGAATTTATTGATAAC
AAAGGGAAAAATGTGGTGCGAGGCCCTGCGCAAGTGAAGGTTCCGGATGG
GCGCGTTCTCGACGTGCttccaggggaggaggttgagatAATCGGAGGGC
TTGTGTACCGCACCTACACAAATGGATTCCCCCCCGTGAACGAAGCTCGC
CTtcgcgaggaggggcaagtggTCCTTGAGATCAAATGGAATGAGAACTG
GGAGACCCAAGGTTTTACTCTGGAGGTCATGGGCGTCACGGGCTCCTCCT
GTGTGGAGTACACGAACCGCTTCTGCGAGGCGACTGGATGCAGGCAGAAC
GGGCCCATGGTAGTGAAGCCTGCCTATTTCGAGGTGCCGGTGTCTGTTAC
ACAGAACGAGGGCGTGGTCGAGAAGTTACGTCAAGTTCAATTGGGTACTG
CTAGAATTGAATTTTGAACAAGAATAGGAGAGGCGGAAACGGCCCTCTTT
TTGGAGGAACTTAGACTGCGTCGacccgcctcttcttcaatCGAGCCATT
TCTAGAAATTTATTTAAGAAGCATGTAGGATTGAAGTCGATAAAACTATT
ATATAATCAGTGTACCAAAATTGTACCCGACGAAATCTGAAAAGATGCCT
CGGTTCTTTCTCCA

Coding sequence (CDS) from alignment at CM002460.1:461548..463061+

>rna3007 ID=rna3007|Name=rna3007|organism=Nannochloropsis gaditana|type=CDS|length=615bp|location=Sequence derived from alignment at CM002460.1:461548..463061+ (Nannochloropsis gaditana)
ATGCTGCTGCGCTATCTCGTTATAATGCTAGCTATGTCTCCAAGTTGCGC
CTTTATACTTGGGTGTCGCACGTCTTCTCTTTGCCGCTTCTCGACTGTAC
TGCCGTTGCAAATGAGTAATAACTGGTTTACTGACAGCAGCGGGGAATCA
CTTATTTCGGACGACAAACTAAAATTCGTACATGAATTTATTGATAACAA
AGGGAAAAATGTGGTGCGAGGCCCTGCGCAAGTGAAGGTTCCGGATGGGC
GCGTTCTCGACGTGCttccaggggaggaggttgagatAATCGGAGGGCTT
GTGTACCGCACCTACACAAATGGATTCCCCCCCGTGAACGAAGCTCGCCT
tcgcgaggaggggcaagtggTCCTTGAGATCAAATGGAATGAGAACTGGG
AGACCCAAGGTTTTACTCTGGAGGTCATGGGCGTCACGGGCTCCTCCTGT
GTGGAGTACACGAACCGCTTCTGCGAGGCGACTGGATGCAGGCAGAACGG
GCCCATGGTAGTGAAGCCTGCCTATTTCGAGGTGCCGGTGTCTGTTACAC
AGAACGAGGGCGTGGTCGAGAAGTTACGTCAAGTTCAATTGGGTACTGCT
AGAATTGAATTTTGA

Synonyms

Publications