rna3006, rna3006 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3006
Unique Name	rna3006
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	390
Alignment location	CM002460.1:458523..461946 -

Link to JBrowse

Properties


Property Name	Value
Product	tkl family protein kinase
Orig transcript id	gnl\|cribi\|Naga_100125g19.437.mrna
Orig protein id	gnl\|cribi\|Naga_100125g19.437
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:458523..461946 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100125g19	gene2885	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27674.1	cds2998	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3006	rna3006-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:458523..461946-
coding sequence from alignment at CM002460.1:458523..461946-

mRNA sequence

>rna3006 ID=rna3006|Name=rna3006|organism=Nannochloropsis gaditana|type=mRNA|length=390bp
CCTCCTCCTCTTCCTCCTCCTCTTCCTCTTCCTCTTCTTCTTCGTCCTCA
TCATCACCTTCTTCCTCTTCATCTCCGTCTTCTTTCTCCTCCTCCTCATC
ATCATCTTCTTCCTCCTCCTCCTCCTCATCATCTTCTTCTTCCTCCTCCT
CTGCTGGTTCTTCTGTTTCCTCATCTTCTTCTTCCTCCTCCTCTTCTCGC
TCATCTCCCTCCTCTTCAGTTTCAAGTAGCGGTGAAGAGTCTGATAGTAA
CACTTCAAGCAGCAGCAGCAGGAGAAGTCGAAGGAGTAGTAATAGTAGCA
GTAGTCGAGGCACCATCCTCTCCTCTGAGAGTTACGAGCGAGGTTGAACG
AAGGGCTTCTAAAGAAAACACTTGAGGTCTTGAAAGTTTT

protein sequence of rna3006

>rna3006-protein ID=rna3006-protein|Name=rna3006|organism=Nannochloropsis gaditana|type=polypeptide|length=779bp
MHRLLRSPAADRASSTGTTQLSTLDTLKSSAYPPICGNLSSEVSGGSYVV
VEACVKTGAVLLVLLYMYHRRRSVESPSSSSILSALNRSAGQGGASTSLI
FPFYNSLFYATACVDVLTVALSLTFGGHLPPAIAALCWALNRLITEGLTI
FLLHHGVGLATLQYSFTYAVMWALVSFLAWYCVPLLRADGNANVVGDVLA
LLYLTPPLIGYLLLSFAPMKVLPRRPAVLPVALFMSAVFAALALREALLA
THSFLPGPCLLWSAWSLLLWACFPWVVYHALVADTRWWQGLYQNPRGWAG
NLNTPLLDVWSDGLLDVPASELATLMHELETEPGAGLPASVHGPSSPASS
PSPRPSPPADAGPALVASGRVPIVPFGQLRLRTDLRYRSGSNSRVYVGEW
HGRRVAVKMLFSMELDRAILQAFVQEARLLYGLRRHPNILRCLGVAIMPP
AACLVTEFCEHGSLFDFLRRFRQQELSRERQRRCRLRPAEEPRRGQARRR
PQVLTKTGGNGEAEAPVNDCAKGEIAKEEEGEEEEKEEEEDGGEEEEEEG
ADTELLLEKAQRARTRGSLEPNGLEPPLPSQLPLSRRLELMVECAAGVCH
LHARGLVHGDIKSLNFLVDRTLAVKLGDVGECRQAGCVPEGGLPIFPSTI
NWAPPEVLAGSARRYHPSMDVYSLGLVLHELMTLEAPFHHEPFTRRRSQD
LVQHIIQGGRPSFHRGRLANADGDGGNGEDSRLSLPVPPSLQKLLHQCWR
ADPAQRPSASQVHDHLVELLRGTEEVKGV

mRNA from alignment at CM002460.1:458523..461946-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3006 ID=rna3006|Name=rna3006|organism=Nannochloropsis gaditana|type=mRNA|length=3424bp|location=Sequence derived from alignment at CM002460.1:458523..461946- (Nannochloropsis gaditana)
GAGCTATGTTTCAGTGATTCAAGGCAACAAAACTCACACCCTTTGTCACC
ATTCATATGAACAGACATAAAGGGTGCCATGGCACCATTTCATTCGTGAC
TTCTGACCCTAGCAGTTCGCAGAACTTCATCCTCCTTCTCTCAGTCGCTG
TTCCATGACCACTTGACCCCTTCTGGAGGAGGAATGCACCGATTATTGCG
TAGTCCAGCTGCAGACAGGGCGTCGTCAACCGGCACAACACAATTGTCTA
CCCTTGACACTCTCAAAAGTTCTGCATACCCACCCATATGCGGGAACCTA
AGCAGCGAAGTATCGGGGGGTAGCTATGTGGTAGTCGAGGCTTGCGTCAA
GACGGGGGCAGTCCTGCTCGTTCTTCTTTACATGTACCATCGCAGACGCT
CTGTCGAATCTCCCTCTTCCTCGTCTATATTATCAGCATTGAACAGGTCC
GCGGGGCAGGGTGGTGCCAGCACATCGTTGATCTTCCCTTTTTATAACTC
TCTCTTCTACGCCACGGCCTGCGTGGACGTGCTCACGGTTGCGCTCTCCC
TCACGTTTGGCGGGCATCTGCCCCCGGCAATAGCGGCGCTTTGCTGGGCA
CTGAACCGACTGATCACGGAGGGACTCACGATCTTCCTCTTGCACCACGG
GGTGGGCCTGGCGACTCTTCAGTACAGCTTTACGTATGCCGTCATGTGGG
CGCTTGTCTCCTTTTTGGCGTGGTACTGCGTGCCCCTGCTCAGGGCCGAT
GGGAATGCCAACGTAGTCGGGGACGTGTTGGCCCTTCTCTACCTGACGCC
CCCCCTCATCGGCTACCTGCTGCTCTCCTTCGCCCCCATGAAGGTCCTCC
CGCGTCGCCCGGCCGTCCTCCCCGTCGCCCTCTTCATGTCCGCCGTCTTC
GCCGCCCTGGCACTCCGGGAGGCGCTTTTGGCCACCCACTCTTTCCTCCC
GGGACCCTGCCTCCTGTGGAGCGCCTGGTCCCTCCTCCTGTGGGCCTGCT
TCCCCTGGGTGGTGTACCATGCCCTGGTCGCGGACACGCGCTGGTGGCAA
GGCCTCTACCAGAACCCGCGCGGGTGGGCGGGGAACCTGAACACCCCCCT
CCTCGACGTCTGGAGCGACGGGCTGCTGGACGTTCCTGCCTCGGAGCTAG
CCACCCTCATGCACGAGCTGGAGACGGAGCCCGGGGCCGGCCTTCCCGCC
TCCGTCCACGGCCCCTCCAGCCCTGCTTCCTCTCCCTCGCCCAGGCCCTC
CCCACCCGCCGACGCCGGCCCCGCCCTTGTCGCCTCTGGGCGCGTCCCCA
TCGTCCCCTTCGGCCAGCTTCGGCTGCGGACGGACTTGCGCTACCGGTCG
GGCAGCAACTCGCGCGTCTATGTCGGGGAGTGGCACGGGCGGCGGGTGGC
TGTGAAGATGCTTTTCTCGATGGAACTCGATAGGGCCATTCTCCAGGCCT
TCGTGCAGGAGGCCCGCCTTTTGTACGGCCTGCGGCGACACCCCAACATC
CTACGGTGTCTGGGCGTGGCCATCATGCCTCCCGCTGCCTGCTTGGTCAC
CGAGTTCTGCGAGCACGGGTCGCTCTTCGACTTCCTCCGCCGGTTCCGGC
AGCAAGAGCTGAGCCGGGAGCGGCAGCGAAGGTGTCGGCTGCGTCCAGCA
GAGGAGCCGAGGCGAGGGCAAGCGCGACGAAGACCCCAGGTTCTGACAAA
AACAGGCGGGAACGGGGAAGCGGAGGCTCCTGTGAACGACTGTGCCAAGG
GGGAGATAGCGAAGGAGGAGGAGGGAGAGGAGGAAGAGAAGGAAGAGGAG
GAGGACGGGGGGGAGGAAGAGGAGGAAGAGGGGGCTGACACCGAGTTGCT
GCTGGAGAAGGCGCAACGCGCACGGACGAGGGGCTCTTTGGAGCCCAACG
GGCTGGAGCCCCCCCTGCCCTCCCAGCTGCCCCTCTCACGCCGGCTGGAG
CTTATGGTGGAGTGCGCGGCCGGGGTCTGCCACCTGCACGCCCGGGGACT
GGTCCACGGGGACATCAAGTCCCTGAACTTTCTGGTCGACCGGACGCTGG
CGGTCAAGCTGGGCGACGTGGGGGAGTGCAGGCAGGCGGGATGCGTGCCG
GAGGGCGGCTTGCCGATCTTCCCTAGCACCATCAATTGGGCGCCACCGGA
GGTTTTGGCGGGAAGCGCCAGGCGGTATCACCCCTCCATGGACGTGTATT
CCCTGGGTCTGGTCCTGCACGAGCTCATGACCCTGGAGGCGCCTTTCCAC
CACGAGCCTTTCACTAGGCGCCGGTCTCAGGACCTTGTACAGCACATCAT
CCAAGGCGGGCGGCCCTCTTTCCACCGTGGGAGGCTCGCGAACGCGGACG
GAGATGGAGGAAATGGAGAAGACTCCCGTCTGTCCCTTCCCGTCCCACCC
TCTCTCCAGAAACTCCTTCATCAGTGCTGGCGGGCCGATCCAGCCCAGCG
GCCTTCGGCGTCTCAGGTTCACGACCATCTTGTTGAACTTCTGAGGGGTA
CCGAGGAGGTCAAAGGGGTCTAGGGACGGGAGCTGAGGATAAACCGAGGG
GCTAAAGCCTTGTGCGTCACTGCTTATACGCTGTGAATATTTGAAGACAT
TTCATATAAAACGATGTACAGAAATTAAATAACCTCGATACATTCCAATG
GACATGCTTTCGCGAGGCATTTCAATACGACCGTTCTGATAATTCGATGC
AGCGGGTTCAGCGGATAGAGCCTTAGTTTGCACTTCATTGAAAATACCCT
TTACAAGTCAATTTTAGTCTTTGTACCTACCATGCCAAGCGTCACTAAGG
TTTTTGCGTACCTGAAAGAAACCGCGCAAGGCTAGGGCGGTCGGGGCAGT
AACCTCCTTCCCCGACTCCCCGCTGGCCGTCCGCTCCGTCCTGACCCTCT
CTGCATTCTCTCCGGCTCATGTTTGTTATTTTTTTGGGTACTTACGTCTT
CTACAACGTTTGTTAACAATTAAGCAGTGGAACGTGGGCCATTTGCGCGG
GCAGCATAGCAATAAGGGTTGTCACACCATCAAACTTCTGCAACGGGCAG
CCCTCCCCCTCATGTCCTCGCTCCTCCTTGGCAGTGGCAATACGAGAACG
ACCGCCTTGCGTCGAGGTCCCTACAACCGCACGCGTGAAGATAAAAAAGC
AGCTTACTGCCAGAAATGCAATGCACCCGGCCATTGGACCTACGAATGTA
AGAGTGCCCGGCACTACCAGAAACGAGTAAGCAAGAGCGCCATTCTCGAG
CATCCTGAGCTCCAACCTTCTTTTTCGCTGGAGGTACCTCCAGGATATAT
GACCAAGGAAGATAAAACAGCCAAAATGTTGGGAAAGGTGGGGGATGAGC
GAGAGAAAGCCAAAGGCGCAAAGACGTCCGATAAGAAACGAACCGGGAAG
CGCCGTCGGTCTCCCTCCTCCTCC

Coding sequence (CDS) from alignment at CM002460.1:458523..461946-

>rna3006 ID=rna3006|Name=rna3006|organism=Nannochloropsis gaditana|type=CDS|length=2340bp|location=Sequence derived from alignment at CM002460.1:458523..461946- (Nannochloropsis gaditana)
ATGCACCGATTATTGCGTAGTCCAGCTGCAGACAGGGCGTCGTCAACCGG
CACAACACAATTGTCTACCCTTGACACTCTCAAAAGTTCTGCATACCCAC
CCATATGCGGGAACCTAAGCAGCGAAGTATCGGGGGGTAGCTATGTGGTA
GTCGAGGCTTGCGTCAAGACGGGGGCAGTCCTGCTCGTTCTTCTTTACAT
GTACCATCGCAGACGCTCTGTCGAATCTCCCTCTTCCTCGTCTATATTAT
CAGCATTGAACAGGTCCGCGGGGCAGGGTGGTGCCAGCACATCGTTGATC
TTCCCTTTTTATAACTCTCTCTTCTACGCCACGGCCTGCGTGGACGTGCT
CACGGTTGCGCTCTCCCTCACGTTTGGCGGGCATCTGCCCCCGGCAATAG
CGGCGCTTTGCTGGGCACTGAACCGACTGATCACGGAGGGACTCACGATC
TTCCTCTTGCACCACGGGGTGGGCCTGGCGACTCTTCAGTACAGCTTTAC
GTATGCCGTCATGTGGGCGCTTGTCTCCTTTTTGGCGTGGTACTGCGTGC
CCCTGCTCAGGGCCGATGGGAATGCCAACGTAGTCGGGGACGTGTTGGCC
CTTCTCTACCTGACGCCCCCCCTCATCGGCTACCTGCTGCTCTCCTTCGC
CCCCATGAAGGTCCTCCCGCGTCGCCCGGCCGTCCTCCCCGTCGCCCTCT
TCATGTCCGCCGTCTTCGCCGCCCTGGCACTCCGGGAGGCGCTTTTGGCC
ACCCACTCTTTCCTCCCGGGACCCTGCCTCCTGTGGAGCGCCTGGTCCCT
CCTCCTGTGGGCCTGCTTCCCCTGGGTGGTGTACCATGCCCTGGTCGCGG
ACACGCGCTGGTGGCAAGGCCTCTACCAGAACCCGCGCGGGTGGGCGGGG
AACCTGAACACCCCCCTCCTCGACGTCTGGAGCGACGGGCTGCTGGACGT
TCCTGCCTCGGAGCTAGCCACCCTCATGCACGAGCTGGAGACGGAGCCCG
GGGCCGGCCTTCCCGCCTCCGTCCACGGCCCCTCCAGCCCTGCTTCCTCT
CCCTCGCCCAGGCCCTCCCCACCCGCCGACGCCGGCCCCGCCCTTGTCGC
CTCTGGGCGCGTCCCCATCGTCCCCTTCGGCCAGCTTCGGCTGCGGACGG
ACTTGCGCTACCGGTCGGGCAGCAACTCGCGCGTCTATGTCGGGGAGTGG
CACGGGCGGCGGGTGGCTGTGAAGATGCTTTTCTCGATGGAACTCGATAG
GGCCATTCTCCAGGCCTTCGTGCAGGAGGCCCGCCTTTTGTACGGCCTGC
GGCGACACCCCAACATCCTACGGTGTCTGGGCGTGGCCATCATGCCTCCC
GCTGCCTGCTTGGTCACCGAGTTCTGCGAGCACGGGTCGCTCTTCGACTT
CCTCCGCCGGTTCCGGCAGCAAGAGCTGAGCCGGGAGCGGCAGCGAAGGT
GTCGGCTGCGTCCAGCAGAGGAGCCGAGGCGAGGGCAAGCGCGACGAAGA
CCCCAGGTTCTGACAAAAACAGGCGGGAACGGGGAAGCGGAGGCTCCTGT
GAACGACTGTGCCAAGGGGGAGATAGCGAAGGAGGAGGAGGGAGAGGAGG
AAGAGAAGGAAGAGGAGGAGGACGGGGGGGAGGAAGAGGAGGAAGAGGGG
GCTGACACCGAGTTGCTGCTGGAGAAGGCGCAACGCGCACGGACGAGGGG
CTCTTTGGAGCCCAACGGGCTGGAGCCCCCCCTGCCCTCCCAGCTGCCCC
TCTCACGCCGGCTGGAGCTTATGGTGGAGTGCGCGGCCGGGGTCTGCCAC
CTGCACGCCCGGGGACTGGTCCACGGGGACATCAAGTCCCTGAACTTTCT
GGTCGACCGGACGCTGGCGGTCAAGCTGGGCGACGTGGGGGAGTGCAGGC
AGGCGGGATGCGTGCCGGAGGGCGGCTTGCCGATCTTCCCTAGCACCATC
AATTGGGCGCCACCGGAGGTTTTGGCGGGAAGCGCCAGGCGGTATCACCC
CTCCATGGACGTGTATTCCCTGGGTCTGGTCCTGCACGAGCTCATGACCC
TGGAGGCGCCTTTCCACCACGAGCCTTTCACTAGGCGCCGGTCTCAGGAC
CTTGTACAGCACATCATCCAAGGCGGGCGGCCCTCTTTCCACCGTGGGAG
GCTCGCGAACGCGGACGGAGATGGAGGAAATGGAGAAGACTCCCGTCTGT
CCCTTCCCGTCCCACCCTCTCTCCAGAAACTCCTTCATCAGTGCTGGCGG
GCCGATCCAGCCCAGCGGCCTTCGGCGTCTCAGGTTCACGACCATCTTGT
TGAACTTCTGAGGGGTACCGAGGAGGTCAAAGGGGTCTAG

Synonyms

Publications