rna3005, rna3005 (mRNA) Nannochloropsis gaditana

Overview
Namerna3005
Unique Namerna3005
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1847
Alignment locationCM002460.1:458029..458418 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100104g29.5940.mrna
Orig protein idgnl|cribi|Naga_100104g29.5940
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:458029..458418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100104g29gene2884Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27677.1cds2997Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3005rna3005-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3005 ID=rna3005|Name=rna3005|organism=Nannochloropsis gaditana|type=mRNA|length=1847bp
CCCTCTCATCCCATGATACACAGGTGGGGACATTCTGCGGTGATGGTAGA
ATTGAGAGTCGCTGGTATGAACATAAGCGTGCTGCCGCTGCTGCTTCTGC
TCCTGGCCTCAGCCTCCGGTGAGGCGCAGAACGAGAACTCCTTTGGCAAG
GCGGCCGTCTTTATGAATGGGAGATGGACACAATTCGATGAAAACGATGA
CGCTGGCGTGCCGCAGCCGTATCCACCCAAGACTGACTCGTGGACACTCA
ATGACACGAGCATCATGGTCTCCATCTCATCGTTTCGGGACTATCGCTGC
CCCAAGACTCTCTACAACCTTTTTACCAAGGCCGCCAATCCTGATCGTGT
GTACGCGGGTGTAGTGCAGCAGAACAATGCGGGAGATGTTGATTGCCTGT
ACGATTACTGCGAGAAGATCAAGGAGGAGCGAGGCATCGGACCCGACGCC
TCCGCCGCGGACCCCAACCTTCGCATCACCCAAAACTGTCCGCACGCCGA
CCAGGTCAAGATGCTACGAGTACAGGCCGAAGACGCGAAGGGGCCAACCT
ACGGCCGGTATCTGGGAAGCTATTTGGTGGGGGACGAGGAATTCTGCATG
CAGATAGACGCGCACATGGACTTTGAGGACCACTGGGACAAGCAGCTCTT
GGACATGTGGGGACTTGCGAACAACGAGTACGGCGTGCTCACCACCTACG
TGCCCAACCTGGACCAGCTCCACGTGAACCTGAACGGGCGCTTCGAGGTG
CCGCAAGTCTGCCGGGTCACCTACACCCCCGGGGAGAAGATGGTGCGGAA
CGAGCAAGCCACCAACTGCATCTGGTTGCGCAAGCCGAAGCTGACCTCGA
CCTGGGCGGCCGGATTCGCGTTCAGCAAGTGCCACGCGGACTTGAAGACG
CCCTACGACCCGCACTTGCCCTCCCTCTTCGACGGGGAGGAGTACTCCAA
GTATGCGCGCCTGTGGACCCGGGGCTACGACACGTACACGCCACACCGAA
GCGTCGTCTACCATGACTACACCCACGGAGCCACGGAGAAGGACGCCAAC
GCCTGGTCGCGCAAGTACCGTGAGCTCAAGCACTCCCACGAGCGCCTCCG
GACGCTCCTAGGGTACTCCGGCGCGGTGGTGGGCAGAGAAACACCCGCGG
CGGCCGAGATGCTCGGAAGGTGGGACCTGGGGAAGAAGAGGAGCTTGAAC
CAGCTGATCGCCTTCACGGGGGCGGACACCAGGGAGACCAAGGTCGATTT
CAATAGCTGCGGAAAGCTGCAATGGGTCCCTTTCGACGAGGGCGACGACG
ACGATTGGTACTCGGAAAGCACCAGCGCAGCGAGGAGAAGGAGGAGCGCC
AAGGCAGAGAGCGCGAGAGTGGCCAGTAGGCTTTTCGGAAAGGGGGCCAG
GGGGGAAGGAGAACAGGGAAGTGGCAGGGGGGGAGAGGGTAGCCGACAAG
CGAGGGCGTGGGCGGGAGGCGGGGTCCACGGCTTGAGCGAGCAGCTGGCG
ATCCCTCGTGTCAGCCGGGCACACTTGTTGTGGGCTTTGAGCATCCTGAT
TATCGCCGCGGTGGCGAGCCTGCTGGCGGCCTACAGGCGCGAGAGGGGCC
GTGGGGGCACGAGGATGGGGAGATCGTTCTGGCCTGAGTTTGTGATGGGA
AAGGCTGTGAAACGGGTATGAATGCCGTCGTATCCCGCTAAATGCCATAG
CAAAAAAAATAGTGCATGACTCTTTTGAAAACTTTCAAGACCTCAAGTGT
TTTCTTTAGAAGCCCTTCGTTCAACCTCGCTCGTAACTCTCAGAGGAGAG
GATGGTGCCTCGACTACTGCTACTATTACTACTCCTTCGACTTCTCC
back to top

protein sequence of rna3005

>rna3005-protein ID=rna3005-protein|Name=rna3005|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
PPPLPPPLPLPLLLRPHHHLLPLHLRLLSPPPHHHLLPPPPPHHLLLPPP
LLVLLFPHLLLPPPLLAHLPPLQFQVAVKSLIVTLQAAAAGEVEGVVIVA
VVEAPSSPLRVTSEVERRASKENT
back to top

mRNA from alignment at CM002460.1:458029..458418-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3005 ID=rna3005|Name=rna3005|organism=Nannochloropsis gaditana|type=mRNA|length=390bp|location=Sequence derived from alignment at CM002460.1:458029..458418- (Nannochloropsis gaditana)
CCTCCTCCTCTTCCTCCTCCTCTTCCTCTTCCTCTTCTTCTTCGTCCTCA
TCATCACCTTCTTCCTCTTCATCTCCGTCTTCTTTCTCCTCCTCCTCATC
ATCATCTTCTTCCTCCTCCTCCTCCTCATCATCTTCTTCTTCCTCCTCCT
CTGCTGGTTCTTCTGTTTCCTCATCTTCTTCTTCCTCCTCCTCTTCTCGC
TCATCTCCCTCCTCTTCAGTTTCAAGTAGCGGTGAAGAGTCTGATAGTAA
CACTTCAAGCAGCAGCAGCAGGAGAAGTCGAAGGAGTAGTAATAGTAGCA
GTAGTCGAGGCACCATCCTCTCCTCTGAGAGTTACGAGCGAGGTTGAACG
AAGGGCTTCTAAAGAAAACACTTGAGGTCTTGAAAGTTTT
back to top

Coding sequence (CDS) from alignment at CM002460.1:458029..458418-

>rna3005 ID=rna3005|Name=rna3005|organism=Nannochloropsis gaditana|type=CDS|length=375bp|location=Sequence derived from alignment at CM002460.1:458029..458418- (Nannochloropsis gaditana)
CCTCCTCCTCTTCCTCCTCCTCTTCCTCTTCCTCTTCTTCTTCGTCCTCA
TCATCACCTTCTTCCTCTTCATCTCCGTCTTCTTTCTCCTCCTCCTCATC
ATCATCTTCTTCCTCCTCCTCCTCCTCATCATCTTCTTCTTCCTCCTCCT
CTGCTGGTTCTTCTGTTTCCTCATCTTCTTCTTCCTCCTCCTCTTCTCGC
TCATCTCCCTCCTCTTCAGTTTCAAGTAGCGGTGAAGAGTCTGATAGTAA
CACTTCAAGCAGCAGCAGCAGGAGAAGTCGAAGGAGTAGTAATAGTAGCA
GTAGTCGAGGCACCATCCTCTCCTCTGAGAGTTACGAGCGAGGTTGAACG
AAGGGCTTCTAAAGAAAACACTTGA
back to top
Synonyms
Publications