rna30, rna30 (mRNA) Nannochloropsis gaditana

Overview
Namerna30
Unique Namerna30
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length651
Alignment locationCM002455.1:94797..95671 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100652g1.2046.mrna
Orig protein idgnl|cribi|Naga_100652g1.2046
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:94797..95671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100652g1gene28Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna30rna30-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30642.1cds30Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna30 ID=rna30|Name=rna30|organism=Nannochloropsis gaditana|type=mRNA|length=651bp
ATGGCGCGTCTTAAGTTGTCACCGGGCTCCCATTCGATCATGTTACGGTA
CCTCGTGCGTCCTCCCGCCCACAGGGCAGGGCCTGGGTACTCATTCCATC
ACGTCATCATCCACGCCCTCCCCTTCCCCCATGACAGGGCCGCCGAAATG
GTGTCCGCCCTTCTCCCTCCTTCGATTTCTGGAGCCTGGCAAAAGGACCT
TGAGAGCGCTCGCCGCGACGCGGACCTCTTCCCCCACCACGACAACCTGC
CGGCGACAGGATACAACTTTAACAACGTCGATTTGCTCGTCCGCCTCGAC
CGGGCGCAGACGCTTTCGCGCCAAATCTTCGCCCAGGCCCTGCATGCCTG
GTTGGCAAAGGAGCAGGAAGCCATCGACCCGTCCTCCCCCCCGCCCTCCC
TCCCTTCCTCCTTCACCTTCAACGCAGACGCGGCGCGCGCCATAGACGAC
GGGCAAGCCCCCGTATCCGTGTTGGTTGTAAACACCTTAGGATGGCCCCG
GAATGCCACGGTTACCATTCGCGTCTCTCGGAGCGACTTGAAGGTGACCT
GCAGCCTCCAGCCCACCATGCATACCGCCAACACGACTCATCCCGAGGCG
CCCCACTCTTCCCTTTTTCCAGCGGCGCCAGGTCCAGATCGCGGTCTGTG
A
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protein sequence of rna30

>rna30-protein ID=rna30-protein|Name=rna30|organism=Nannochloropsis gaditana|type=polypeptide|length=259bp
NLRGDDRSTVSLPPFLLSFRPTCDLTSVPSENITSNLPGRAHEACLRRHT
TAMTAPLLTLLPPLTWPAEEDLRGGIPPCSPPAHPPLPCPLPSLQPRSFF
LAGKYPRFGEGLPASVHLVSLREVGGERGGGGREREGQGEERLLLVQFRH
LGMENDGGGRGVEFDVDVEGWLARWVEEGWRVRRVEGRTLTGLYADEGLE
KRGREVCRVRWEGDGEGRGLHVWIARGGFCTVEVGMVGSAEARKEDVVRE
GKERDPEDG
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mRNA from alignment at CM002455.1:94797..95671+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna30 ID=rna30|Name=rna30|organism=Nannochloropsis gaditana|type=mRNA|length=875bp|location=Sequence derived from alignment at CM002455.1:94797..95671+ (Nannochloropsis gaditana)
ACAACCTGCGCGGCGACGACCGAAGCacggtctccctccctcccttcctc
ctttccttccgccctACGTGCGACCTCACCAGCGTACCCTCCGAAAACAT
CACCAGTAACCTCCCTGGGCGGGCGCACGAAGCTTGCCTGCGTCGTCACA
CGACGGCCATGACCGCACCCCTCCTCACGTTGCTGCCGCCCTTGACCTGG
CCTGCCGAGGAGGATCTTAGGGGGGGGATTCCTCCGTGCAGCCCGCcagc
ccaccctcccctcccctgcccactcccatccctccagccccgtTCCTTTT
TCCTAGCGGGGAAGTACCCGAGGTTCGGGGAGGGCTTACCGGCGTCGGTC
CACTTAGTAAGCCtgagggaggtgggtggggagcgcggggggggggggag
ggaaagggaggggcaaggggaggaaaggctctTGCTCGTGCAGTTTCGGC
ATTTGGGGATGGAAaacgacggaggaggcaggggcgtggAGTTTGatgtg
gacgtggaagggtgGCTGGCCAGgtgggtggaagagggctggagggtgag
gagggtggaagggcggaCTCTGACAGGGCTGTACGCCGACGAGGGGctgg
aaaagagagggagagaggtatGTCGAgtgcggtgggagggagatggggag
ggcagggggttGCACGTTTGGATCGCGCGGGGAGGGTTTTGCACGGTGGA
GGTAGGCATGGTGGGGAGCGcagaggccaggaaggaggatgtggtgcgag
aaggaaaggagcgtGATCCCGAAGATGGGTAAAAGGAAGGCATACTGTGA
CGAAGGGAATTAAATCCCACAATTTTGGGCACGTAAATTTTCTTTTGAGT
GTTCTCATATCAAGCGTGAGGAGGT
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Coding sequence (CDS) from alignment at CM002455.1:94797..95671+

>rna30 ID=rna30|Name=rna30|organism=Nannochloropsis gaditana|type=CDS|length=780bp|location=Sequence derived from alignment at CM002455.1:94797..95671+ (Nannochloropsis gaditana)
AACCTGCGCGGCGACGACCGAAGCacggtctccctccctcccttcctcct
ttccttccgccctACGTGCGACCTCACCAGCGTACCCTCCGAAAACATCA
CCAGTAACCTCCCTGGGCGGGCGCACGAAGCTTGCCTGCGTCGTCACACG
ACGGCCATGACCGCACCCCTCCTCACGTTGCTGCCGCCCTTGACCTGGCC
TGCCGAGGAGGATCTTAGGGGGGGGATTCCTCCGTGCAGCCCGCcagccc
accctcccctcccctgcccactcccatccctccagccccgtTCCTTTTTC
CTAGCGGGGAAGTACCCGAGGTTCGGGGAGGGCTTACCGGCGTCGGTCCA
CTTAGTAAGCCtgagggaggtgggtggggagcgcggggggggggggaggg
aaagggaggggcaaggggaggaaaggctctTGCTCGTGCAGTTTCGGCAT
TTGGGGATGGAAaacgacggaggaggcaggggcgtggAGTTTGatgtgga
cgtggaagggtgGCTGGCCAGgtgggtggaagagggctggagggtgagga
gggtggaagggcggaCTCTGACAGGGCTGTACGCCGACGAGGGGctggaa
aagagagggagagaggtatGTCGAgtgcggtgggagggagatggggaggg
cagggggttGCACGTTTGGATCGCGCGGGGAGGGTTTTGCACGGTGGAGG
TAGGCATGGTGGGGAGCGcagaggccaggaaggaggatgtggtgcgagaa
ggaaaggagcgtGATCCCGAAGATGGGTAA
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Synonyms
Publications