rna2999, rna2999 (mRNA) Nannochloropsis gaditana

Overview
Namerna2999
Unique Namerna2999
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length348
Alignment locationCM002460.1:447935..448444 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100104g23.5966.mrna
Orig protein idgnl|cribi|Naga_100104g23.5966
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:447935..448444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100104g23gene2878Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2999rna2999-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27703.1cds2991Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2999 ID=rna2999|Name=rna2999|organism=Nannochloropsis gaditana|type=mRNA|length=348bp
ATGAATCACAAGTCAAGCTTCAAGGAGAAATGTCGTCGCAAAAGACGAAA
AACGAAGGCACTGGAGCGCTCGCATGCTTTAAGCGACGGAAAGTGCGTTC
AAAGTGTGCCCTTGGCCAGCCGAGAGGAGGACTCACCTGCGCATTCGCAC
TTTCAAGACTTTTGCACATTGAGGGAAGTGCGACCGTTCCCTGATTTCCT
AAGACGTCTAAGCGAGACTCGCAATGGACAATTTGATAGCCGTGGTAGTA
TAAACCATTATCTTATCGTTCGGCCGGAGGTGAAAGCGAAAAGCTATGGT
ATTCATACCTTCGTAGAGAACCTTGTGAGACAGAAGTTTCCTACCTGA
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protein sequence of rna2999

>rna2999-protein ID=rna2999-protein|Name=rna2999|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MPKRFLRRYERALICFHVSDVSFPHTPVPQCTMTVVKVEVSSYSNRTPSS
SMGDRAVLVISVLSFCLIFVRFCGLFSDIEHQRLKRIESDQILQTTFADA
AMNKSSCLWINFMDYGRSGNRLI
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mRNA from alignment at CM002460.1:447935..448444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2999 ID=rna2999|Name=rna2999|organism=Nannochloropsis gaditana|type=mRNA|length=510bp|location=Sequence derived from alignment at CM002460.1:447935..448444+ (Nannochloropsis gaditana)
ATGCCGAAGCGATTTCTCCGCAGATATGAGAGGGCACTTATATGCTTTCA
TGTTTCTGATGTGTCGTTCCCACACACCCCGGTGCCGCAATGCACCATGA
CTGTGGTCAAAGTTGAAGTAAGTAGCTACTCGAATCGGTAACTTAGCATA
ATTGTTGCATGGGCACATGCCATTATTACCAGTTGTGCAGCAGATCGTAA
GTCAAGTCGGATCTATTTGAGTCTTATATTCATCTTGATTATCATCTTGT
GACACTTTACCGGGGGCCTCGAAAGAACTCCCTCGTCGAGCATGGGAGAT
CGTGCAGTCCTTGTCATTTCGGTACTTAGTTTTTGTCTGATTTTCGTTCG
TTTCTGCGGACTGTTTTCCGACATTGAACATCAGCGGTTGAAACGAATAG
AAAGCGATCAAATATTGCAAACAACGTTTGCCGACGCGGCAATGAACAAG
TCTTCATGCTTATGGATTAATTTCATGGATTATGGCCGCTCAGGAAATCG
TCTAATTTAG
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Coding sequence (CDS) from alignment at CM002460.1:447935..448444+

>rna2999 ID=rna2999|Name=rna2999|organism=Nannochloropsis gaditana|type=CDS|length=744bp|location=Sequence derived from alignment at CM002460.1:447935..448444+ (Nannochloropsis gaditana)
ATGCCGAAGCGATTTCTCCGCAGATATGAGAGGGCACTTATATGCTTTCA
TGTTTCTGATGTGTCGTTCCCACACACCCCGGTGCCGCAATGCACCATGA
CTGTGGTCAAAGTTGAAGTAAGTAGCTACTCGAATCGAACTCCCTCGTCG
AGCATGGGAGATCGTGCAGTCCTTGTCATTTCGGTACTTAGTTTTTGTCT
GATTTTCGTTCGTTTCTGCGGACTGTTTTCCGACATTGAACATCAGCGGT
TGAAACGAATAGAAAGCGATCAAATATTGCAAACAACGTTTGCCGACGCG
GCAATGAACAAGTCTTCATGCTTATGGATTAATTTCATGGATTATGGCCG
CTCAGGAAATCGTCTAATTTAGATGCCGAAGCGATTTCTCCGCAGATATG
AGAGGGCACTTATATGCTTTCATGTTTCTGATGTGTCGTTCCCACACACC
CCGGTGCCGCAATGCACCATGACTGTGGTCAAAGTTGAAGTAAGTAGCTA
CTCGAATCGAACTCCCTCGTCGAGCATGGGAGATCGTGCAGTCCTTGTCA
TTTCGGTACTTAGTTTTTGTCTGATTTTCGTTCGTTTCTGCGGACTGTTT
TCCGACATTGAACATCAGCGGTTGAAACGAATAGAAAGCGATCAAATATT
GCAAACAACGTTTGCCGACGCGGCAATGAACAAGTCTTCATGCTTATGGA
TTAATTTCATGGATTATGGCCGCTCAGGAAATCGTCTAATTTAG
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Synonyms
Publications