rna2998, rna2998 (mRNA) Nannochloropsis gaditana

Overview
Namerna2998
Unique Namerna2998
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length813
Alignment locationCM002460.1:447061..447762 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100104g22.5941.mrna
Orig protein idgnl|cribi|Naga_100104g22.5941
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:447061..447762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100104g22gene2877Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2998rna2998-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27678.1cds2990Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2998 ID=rna2998|Name=rna2998|organism=Nannochloropsis gaditana|type=mRNA|length=813bp
ATGCCCCTTCTCATCGCACTTTCAGAGGTTATAGGGATGCCAAAACCAAT
CCTACGGCTACCCAAAAGTCGCTGCTTAAGCCTCAGTGTTTGGATCTCCT
TCGTCTTCTGTGCAGGGGTGTGTCAAGGTTGGTTCCTTTGTTGCCGCGCA
CGCCCGCCGTATTTAATGTTACAGCGCACCCGTGGAAACGTGCACTGTCT
GCAGGGTGGGGGAGGGCCTGGGGGGGTCGGACGGGTTGCCGGTAAGTATT
CGTGGACGGAGAACGAGTGGGAGGTGGAGGTCACCGTGCCCGTGCCGGCT
CGGACGCGAAAAGAAGACGTGCTTTTCAAAGCTGCCGCCACGAGTGTTAA
ACTTGGGCTAGTGAATAGCACCGAGCTCTTGCTGGGCGGTAAATTGATGG
GAAGGATCGCTCTGGACGGTACATACTGGAGCCTGGAAGGCGAGGGGAAC
GCCCGCGCGGTCAAGCTCCTTCTGGAAAAGAAGCTGGGGGCTCTGGAGAA
CAACATGGATTGGCGGCGCGTGCTGTCCGAAGAGGCTGCAACCGAGGTTG
AGTACCAGGAGGCCGAAAAATTCGACACACAAGCCTACATCCACCAAATG
CTGGGGCCAGGGGGCGTAAACATGAGCTTGGTGGACCGAGAGATGTTCGG
GGGCCTCGCGGGGGGCGTGATGGCGAATGTCAGCCAAGAGGCGCTGAGGG
AATACGTGGAGGGTAAGGTTCTTGACGACGCGACCGGCATGGCGTCTCAA
GGAGGTCGGTCTGGAGGGGGAGGCGAGCAACACGAAGAACCCAAAAGAAG
CAATGGAAGTTAA
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protein sequence of rna2998

>rna2998-protein ID=rna2998-protein|Name=rna2998|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MNHKSSFKEKCRRKRRKTKALERSHALSDGKCVQSVPLASREEDSPAHSH
FQDFCTLREVRPFPDFLRRLSETRNGQFDSRGSINHYLIVRPEVKAKSYG
IHTFVENLVRQKFPT
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mRNA from alignment at CM002460.1:447061..447762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2998 ID=rna2998|Name=rna2998|organism=Nannochloropsis gaditana|type=mRNA|length=702bp|location=Sequence derived from alignment at CM002460.1:447061..447762- (Nannochloropsis gaditana)
ATGAATCACAAGTCAAGCTTCAAGGAGAAATGTCGTCGCAAAAGACGAAA
AACGAAGGCACTGGAGCGCTCGCATGCTTTAAGCGACGGTAGCCCTGAGC
TCTCTCGAATCGAATAGATGGGATTAATCGCACTTGGAAATTCAAGGTGA
AAATGAAAGTGCGAAATGCGTGTCTATATTATAGGCACGCATTTGCTTTT
ATTGATGCCGTGAACCCTGTAGAATGGCCGCACAATAGGAAAGTGCGTTC
AAAGTGTGCCCTTGGCCAGCCGAGAGGAGGACTCACCTGCGCATTCGCAC
TTTCAAGACTTTTGCACATTGAGGGAAGTGCGACCGTTCCCTGATTTCCT
AAGACGTCTAAGCGAGACTCGCAATGGGTAAGTATGGAAAATGGGCTTGG
GTAGTCTAGATGGTCTTGAGATGACAGACTAAGTATTTGAGTCATCATTG
TTTCGCCTTTTTATCCTCCCGTACAAGAAAGTTTTCCGATCAGCGTAGCG
GTGAGCACATCGCCCTAGCTACATATCGTAGTCACGGAGCATTATTAATA
GGGATTTATAATGTCTGGTTGGAGGAGGTAGACAATTTGATAGCCGTGGT
AGTATAAACCATTATCTTATCGTTCGGCCGGAGGTGAAAGCGAAAAGCTA
TGGTATTCATACCTTCGTAGAGAACCTTGTGAGACAGAAGTTTCCTACCT
GA
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Coding sequence (CDS) from alignment at CM002460.1:447061..447762-

>rna2998 ID=rna2998|Name=rna2998|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002460.1:447061..447762- (Nannochloropsis gaditana)
ACAATTTGATAGCCGTGGTAGTATAAACCATTATCTTATCGTTCGGCCGG
AGGTGAAAGCGAAAAGCTATGGTATTCATACCTTCGTAGAGAACCTTGTG
AGACAGAAGTTTCCTACCTGAGAAAGTGCGTTCAAAGTGTGCCCTTGGCC
AGCCGAGAGGAGGACTCACCTGCGCATTCGCACTTTCAAGACTTTTGCAC
ATTGAGGGAAGTGCGACCGTTCCCTGATTTCCTAAGACGTCTAAGCGAGA
CTCGCAATGGATGAATCACAAGTCAAGCTTCAAGGAGAAATGTCGTCGCA
AAAGACGAAAAACGAAGGCACTGGAGCGCTCGCATGCTTTAAGCGACGAC
AATTTGATAGCCGTGGTAGTATAAACCATTATCTTATCGTTCGGCCGGAG
GTGAAAGCGAAAAGCTATGGTATTCATACCTTCGTAGAGAACCTTGTGAG
ACAGAAGTTTCCTACCTGAGAAAGTGCGTTCAAAGTGTGCCCTTGGCCAG
CCGAGAGGAGGACTCACCTGCGCATTCGCACTTTCAAGACTTTTGCACAT
TGAGGGAAGTGCGACCGTTCCCTGATTTCCTAAGACGTCTAAGCGAGACT
CGCAATGGATGAATCACAAGTCAAGCTTCAAGGAGAAATGTCGTCGCAAA
AGACGAAAAACGAAGGCACTGGAGCGCTCGCATGCTTTAAGCGACGACAA
TTTGATAGCCGTGGTAGTATAAACCATTATCTTATCGTTCGGCCGGAGGT
GAAAGCGAAAAGCTATGGTATTCATACCTTCGTAGAGAACCTTGTGAGAC
AGAAGTTTCCTACCTGAGAAAGTGCGTTCAAAGTGTGCCCTTGGCCAGCC
GAGAGGAGGACTCACCTGCGCATTCGCACTTTCAAGACTTTTGCACATTG
AGGGAAGTGCGACCGTTCCCTGATTTCCTAAGACGTCTAAGCGAGACTCG
CAATGGATGAATCACAAGTCAAGCTTCAAGGAGAAATGTCGTCGCAAAAG
ACGAAAAACGAAGGCACTGGAGCGCTCGCATGCTTTAAGCGACG
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Synonyms
Publications