rna2995, rna2995 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2995
Unique Name	rna2995
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	339
Alignment location	CM002460.1:438186..440844 -

Link to JBrowse

Properties


Property Name	Value
Product	Nucleotide-sugar transporter
Orig transcript id	gnl\|cribi\|Naga_100104g17.5965.mrna
Orig protein id	gnl\|cribi\|Naga_100104g17.5965
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:438186..440844 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100104g17	gene2874	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2995	rna2995-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27702.1	cds2987	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:438186..440844-
coding sequence from alignment at CM002460.1:438186..440844-

mRNA sequence

>rna2995 ID=rna2995|Name=rna2995|organism=Nannochloropsis gaditana|type=mRNA|length=339bp
ATGACTGGCACGGGCAAAAAGGTCAATACGACCAAGGCAACCTCCGTGGA
TGCTATGCGAGAGCACGTGGCAGACTTGCTGGCGCGCGGCGGGGAGCGGA
CGCGAGTGGTGCTCAAGTACCGACACTGCGACTCCAAGGCCTCATTGCGG
GTGACGGACGACTGGAAAACCGTAAAATACACGACAAACAGACAGATTGA
TGTGAGTAAGATTACGCGGCTATTAGGACTGGCCGTCCAAGGGAAGGCTA
CAGACACAGCGGAGGGCTCCCTAAGGCCGAGCGCATCACCAACGCGTGCT
CGTAAAGGTAAGGGGAAACAGAAGGCGAAGAAGGGATAA

protein sequence of rna2995

>rna2995-protein ID=rna2995-protein|Name=rna2995|organism=Nannochloropsis gaditana|type=polypeptide|length=469bp
MLPKTIPMKWVALFLLVVQNTSLVLLMRSSLTNRGDHYIVSTAVACMECL
KMVTCLLVEAQGFKHLSHFLAHLRYEVLKPRELLLLSVPSLLYTVQNNLL
YTALANLDAAIYQVCYQLKILTTALFSVLLLKRSLSRTKWTALIILTVGV
SFAELDAHKPKASLPDSFPSAGDEQNPTLGFLCVLMACMTSGFAGVWFEK
ILKGVGTRSKANELKTPPISSQVSAPPGGPRGATPQPSSTAAAASSMWVR
NIQMGVSSVLVAFMTVYSKDGARVAEKGFFHGYNAAVVGVVVLQALGGLV
VALVVVHADNIMKGFGSSLSIILSCSLEWLLFDFYPSLLFLAGAALVNLA
LYVYQTERLPFWPGADCSDAGRQGNGKEPDRITSGASLPLTHKSHSPDMK
GWFTSSARRAALSPPGPSAPRASFMYQSLNEASGSTLAHPVKGAAWRQPH
SHQGDGLGMGRESVGKSLA

mRNA from alignment at CM002460.1:438186..440844-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2995 ID=rna2995|Name=rna2995|organism=Nannochloropsis gaditana|type=mRNA|length=2659bp|location=Sequence derived from alignment at CM002460.1:438186..440844- (Nannochloropsis gaditana)
CATTCACACCCCGGACAAAGTTATGCCATCCATAAATCCCAGCAGGAGTT
CGCTTTCCAACCTTGGACACGGCGATTCACCTCTTACACCCCAAGGCGAG
AATTGGATGAAATTCGGGTCTCACTTGACGACAGCGACCCGGAAACATCG
ACCCCAAAAGGCCCACTTTACGCGTCACTGGACTCTCCGCCAGTCCCCCC
GCTTAAACCCGGCGTGCGAGCGGTCATCCTCGCAGCATCACGCGCAGCGG
CCCCACCGGTTTGAATTTAGGGAGACAGGACCCCGCTTAATTCTCCGTGG
GGTGTTCGGTGCTGTGGCCCCCTCGTCTCGTGGCTTGTGTCGCGGCTACC
TATGCCACCTTTCTCTCACGACTATTATTGCTCACGGCGCCGACGGGGAG
GCTCCCTGGGTCCCGGCCTTCACTCGCACGTTTTTCTACGGAAAGGTCAC
TTCGCCGCGCACGTTTTTATCAATGCCCTATTCATTCGTATTTCTACGTG
ATTTTACACGCACGTACAATACTGCCACCGCTGGTCAGGTGGAATGTTTC
CCAGGTGATATCGCACAACTACGCTTTTTTTGGTGACCGCCGCTTCAGGG
CTGCTTTCCGGCGCTTTTCGATTCAAAAGGAATATGTTGCCCAAAACAAT
ACCCATGAAATGGGTGGCGCTTTTCCTGCTAGTGGTGCAAAATACGTCCT
TAGTTTTGCTCATGCGTTCCTCTCTGACAAACCGGGGCGACCACTACATT
GTCTCGACCGCGGTAGCATGCATGGAGGTGAGTCGGCAAAAGTCGGGGAG
ATGAAATTTTGGGAACAGGAACTCGATGCATGGGACAGACTGCTCCGGAG
GGTGCCGCAGCCTTTCACCCTCAAGCTTAGCCAAATTTTTGTGTATTCCC
TCGACCTTGACACAGTGCCTGAAAATGGTCACCTGCCTCCTTGTGGAGGC
CCAGGGATTTAAGCACCTTTCTCACTTCCTCGCCCACCTTCGGTACGAAG
TCTTGAAGCCCCGCGAGCTGCTTCTTCTCTCCGTGCCCTCCCTCCTCTAC
ACGGTCCAGAACAATCTCCTGTACACCGCGCTCGCCAACCTGGACGCCGC
CATCTACCAAGTCTGTTACCAGCTAAAGATTCTCACCACGGCCCTCTTCT
CTGTCCTCCTCCTCAAGCGCTCCCTCAGCCGGACCAAGTGGACCGCCCTC
ATCATCCTGACTGTTGGGGTCTCCTTTGCTGAGCTTGACGCCCACAAACC
CAAGGCCTCCCTCCCTGACTCCTTCCCCTCCGCGGGCGACGAGCAAAATC
CTACCCTCGGCTTCTTATGCGTGCTCATGGCCTGCATGACCTCCGGTTTC
GCAGGGGTCTGGTTTGAGAAGATTTTAAAGGGCGTGGGGACGCGAAGCAA
AGCAAATGAGCTCAAGACTCCTCCCATCTCCTCGCAAGTCTCGGCCCCCC
CAGGCGGACCTCGTGGGGCTACCCCTCAACCCTCCTCCACGGCCGCTGCC
GCCAGCAGCATGTGGGTCCGCAACATCCAGATGGGCGTCTCCTCGGTGCT
GGTGGCGTTCATGACCGTGTACAGCAAAGACGGCGCCCGGGTGGCGGAGA
AGGGTTTCTTTCACGGCTACAACGCGGCCGTGGTCGGCGTGGTCGTCCTC
CAGGCCCTGGGGGGCTTGGTGGTGGCGCTGGTGGTGGTGCACGCCGACAA
CATCATGAAGGGCTTCGGATCCTCCCTCTCCATCATCCTCTCCTGCTCCC
TCGAGTGGCTCTTATTCGACTTCTACCCCTCCCTCCTCTTCCTTGCAGGG
GCCGCACTAGTCAACCTCGCACTCTACGTTTACCAAACGGAGCGGCTGCC
CTTCTGGCCGGGGGCCGACTGTAGTGATGCAGGAAGACAGGGAAATGGCA
AAGAGCCGGATCGCATTACATCGGGAGCCTCCCTCCCCTTGACGCACAAA
TCGCACAGCCCGGACATGAAAGGGTGGTTCACGTCCAGCGCCAGGAGGGC
CGCCCTGTCCCCGCCTGGCCCCTCCGCCCCCAGGGCCTCCTTCATGTATC
AGTCTCTGAACGAGGCCTCTGGCAGCACGCTCGCCCACCCCGTGAAGGGT
GCAGCATGGCGCCAACCGCACTCTCACCAGGGAGATGGTCTGGGCATGGG
CCGAGAATCGGTGGGGAAGAGCCTCGCGTAGCGGCGATCGACGGAAACGA
TGGGATTTAGGTCGGCGCGGAGCAAGGGAGATCAAGATTGGTGATATGAG
CTCGAGAAGGCGGCTGTCCTCGTCTTGTCTTCATTTGCCGTCAAACAGTT
GTAAGAAAGACAGGTAGGGACTTTAGACAACAAGGAATATTTCTAAATAA
AGCCGAAGTCGCAAAGATAGCACGGTAAAAGAACTTAAAGTCTATCTATG
CGCGCGAAGGCAGCACGAACACGACATGAAAGACGGTGACAAGATAATTC
CGATAAAATCTGTTGTCACAACAAAAAACGGCCTCTGAGTAAGCCGCAGG
AATACTGGCCAAATGTGTTATCACAAATATTTTTTCTTCAATGTTAGCCA
ATCAACCTCTTATCCCTTCTTCGCCTTCTGTTTCCCCTTACCTTTACGAG
CACGCGTTGGTGATGCGCTCGGCCTTAGGGAGCCCTCCGCTGTGTCTGTA
GCCTTCCCT

Coding sequence (CDS) from alignment at CM002460.1:438186..440844-

>rna2995 ID=rna2995|Name=rna2995|organism=Nannochloropsis gaditana|type=CDS|length=2820bp|location=Sequence derived from alignment at CM002460.1:438186..440844- (Nannochloropsis gaditana)
TGCCTGAAAATGGTCACCTGCCTCCTTGTGGAGGCCCAGGGATTTAAGCA
CCTTTCTCACTTCCTCGCCCACCTTCGGTACGAAGTCTTGAAGCCCCGCG
AGCTGCTTCTTCTCTCCGTGCCCTCCCTCCTCTACACGGTCCAGAACAAT
CTCCTGTACACCGCGCTCGCCAACCTGGACGCCGCCATCTACCAAGTCTG
TTACCAGCTAAAGATTCTCACCACGGCCCTCTTCTCTGTCCTCCTCCTCA
AGCGCTCCCTCAGCCGGACCAAGTGGACCGCCCTCATCATCCTGACTGTT
GGGGTCTCCTTTGCTGAGCTTGACGCCCACAAACCCAAGGCCTCCCTCCC
TGACTCCTTCCCCTCCGCGGGCGACGAGCAAAATCCTACCCTCGGCTTCT
TATGCGTGCTCATGGCCTGCATGACCTCCGGTTTCGCAGGGGTCTGGTTT
GAGAAGATTTTAAAGGGCGTGGGGACGCGAAGCAAAGCAAATGAGCTCAA
GACTCCTCCCATCTCCTCGCAAGTCTCGGCCCCCCCAGGCGGACCTCGTG
GGGCTACCCCTCAACCCTCCTCCACGGCCGCTGCCGCCAGCAGCATGTGG
GTCCGCAACATCCAGATGGGCGTCTCCTCGGTGCTGGTGGCGTTCATGAC
CGTGTACAGCAAAGACGGCGCCCGGGTGGCGGAGAAGGGTTTCTTTCACG
GCTACAACGCGGCCGTGGTCGGCGTGGTCGTCCTCCAGGCCCTGGGGGGC
TTGGTGGTGGCGCTGGTGGTGGTGCACGCCGACAACATCATGAAGGGCTT
CGGATCCTCCCTCTCCATCATCCTCTCCTGCTCCCTCGAGTGGCTCTTAT
TCGACTTCTACCCCTCCCTCCTCTTCCTTGCAGGGGCCGCACTAGTCAAC
CTCGCACTCTACGTTTACCAAACGGAGCGGCTGCCCTTCTGGCCGGGGGC
CGACTGTAGTGATGCAGGAAGACAGGGAAATGGCAAAGAGCCGGATCGCA
TTACATCGGGAGCCTCCCTCCCCTTGACGCACAAATCGCACAGCCCGGAC
ATGAAAGGGTGGTTCACGTCCAGCGCCAGGAGGGCCGCCCTGTCCCCGCC
TGGCCCCTCCGCCCCCAGGGCCTCCTTCATGTATCAGTCTCTGAACGAGG
CCTCTGGCAGCACGCTCGCCCACCCCGTGAAGGGTGCAGCATGGCGCCAA
CCGCACTCTCACCAGGGAGATGGTCTGGGCATGGGCCGAGAATCGGTGGG
GAAGAGCCTCGCGTAGATGTTGCCCAAAACAATACCCATGAAATGGGTGG
CGCTTTTCCTGCTAGTGGTGCAAAATACGTCCTTAGTTTTGCTCATGCGT
TCCTCTCTGACAAACCGGGGCGACCACTACATTGTCTCGACCGCGGTAGC
ATGCATGGAGTGCCTGAAAATGGTCACCTGCCTCCTTGTGGAGGCCCAGG
GATTTAAGCACCTTTCTCACTTCCTCGCCCACCTTCGGTACGAAGTCTTG
AAGCCCCGCGAGCTGCTTCTTCTCTCCGTGCCCTCCCTCCTCTACACGGT
CCAGAACAATCTCCTGTACACCGCGCTCGCCAACCTGGACGCCGCCATCT
ACCAAGTCTGTTACCAGCTAAAGATTCTCACCACGGCCCTCTTCTCTGTC
CTCCTCCTCAAGCGCTCCCTCAGCCGGACCAAGTGGACCGCCCTCATCAT
CCTGACTGTTGGGGTCTCCTTTGCTGAGCTTGACGCCCACAAACCCAAGG
CCTCCCTCCCTGACTCCTTCCCCTCCGCGGGCGACGAGCAAAATCCTACC
CTCGGCTTCTTATGCGTGCTCATGGCCTGCATGACCTCCGGTTTCGCAGG
GGTCTGGTTTGAGAAGATTTTAAAGGGCGTGGGGACGCGAAGCAAAGCAA
ATGAGCTCAAGACTCCTCCCATCTCCTCGCAAGTCTCGGCCCCCCCAGGC
GGACCTCGTGGGGCTACCCCTCAACCCTCCTCCACGGCCGCTGCCGCCAG
CAGCATGTGGGTCCGCAACATCCAGATGGGCGTCTCCTCGGTGCTGGTGG
CGTTCATGACCGTGTACAGCAAAGACGGCGCCCGGGTGGCGGAGAAGGGT
TTCTTTCACGGCTACAACGCGGCCGTGGTCGGCGTGGTCGTCCTCCAGGC
CCTGGGGGGCTTGGTGGTGGCGCTGGTGGTGGTGCACGCCGACAACATCA
TGAAGGGCTTCGGATCCTCCCTCTCCATCATCCTCTCCTGCTCCCTCGAG
TGGCTCTTATTCGACTTCTACCCCTCCCTCCTCTTCCTTGCAGGGGCCGC
ACTAGTCAACCTCGCACTCTACGTTTACCAAACGGAGCGGCTGCCCTTCT
GGCCGGGGGCCGACTGTAGTGATGCAGGAAGACAGGGAAATGGCAAAGAG
CCGGATCGCATTACATCGGGAGCCTCCCTCCCCTTGACGCACAAATCGCA
CAGCCCGGACATGAAAGGGTGGTTCACGTCCAGCGCCAGGAGGGCCGCCC
TGTCCCCGCCTGGCCCCTCCGCCCCCAGGGCCTCCTTCATGTATCAGTCT
CTGAACGAGGCCTCTGGCAGCACGCTCGCCCACCCCGTGAAGGGTGCAGC
ATGGCGCCAACCGCACTCTCACCAGGGAGATGGTCTGGGCATGGGCCGAG
AATCGGTGGGGAAGAGCCTCGCGTAGATGTTGCCCAAAACAATACCCATG
AAATGGGTGGCGCTTTTCCTGCTAGTGGTGCAAAATACGTCCTTAGTTTT
GCTCATGCGTTCCTCTCTGACAAACCGGGGCGACCACTACATTGTCTCGA
CCGCGGTAGCATGCATGGAG

Synonyms

Publications