rna2989, rna2989 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2989
Unique Name	rna2989
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1349
Alignment location	CM002460.1:426030..429859 +

Link to JBrowse

Properties


Property Name	Value
Product	dioxygenase-like protein
Orig transcript id	gnl\|cribi\|Naga_100104g11.5963.mrna
Orig protein id	gnl\|cribi\|Naga_100104g11.5963
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:426030..429859 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100104g11	gene2868	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2989	rna2989-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27700.1	cds2981	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:426030..429859+
coding sequence from alignment at CM002460.1:426030..429859+

mRNA sequence

>rna2989 ID=rna2989|Name=rna2989|organism=Nannochloropsis gaditana|type=mRNA|length=1349bp
AGCACGAAAAATCAGGCCTTCAGGTGCAACATCTCTCCCACACTATGGTT
TGACGTGGCCATTTCACCGATTTTACGCAGGACGGTTGATTCAAAGCATC
CGAGACAAATATGCCGCTGCGTCTAGTCCTAGGCGCGACATGGCTGGTCC
TGACAGCAGCTGCCGTGAATCATGCGAGCCCGGGTTCTGATCCGGGACTG
CAACCCAAAGAGGCTGTGGTTGTATTTAATAATGGTGTGACTGGAGATGT
CCATCTAAGCCAGGCAACCTTTAAAAGCCCCCTAGAAATGAAGTTGAACT
TGACGACGCTAAGGGACTCTGTTGGGCCCTGGCACATCCATCGTCTCCCT
GTTCAGGACGGCTGCTCCGCCAATTCCACGTCGGGGCACTACAACCCCTT
CAACGTGACTGCCACCTATAAAACTTGCAAGGATGCGACAGAGTGCGAGG
CTGGCGACCTCTCTACCAAGTTCGGGCTGTTGACAGGTGGTGACGTGCAA
AGGTCCATCACAGATCCCCACTTGACCCTCTTCGGATTCAACAGCATTAT
GGGACGATCGATCGTCATTCATGAGAAAGACGGTACTCGCTTCGCTTGCG
GCACCATCATGTACAAGGATCAAGCCCTTGTCACCGCTACGGCAGAATTC
ACGGAGGGCCCTTATGTGGGCAAGGCCATATTTACCCAGCCGCAGGACAG
TAACATCGCCGACACCACCATCTTTATGGATGTCGTGGTAGCTGACGGAA
GTGCTGCACCCAGTGACCCCGTGTCTTTCGCTGTTTATGATGCACCTTGT
GGGTCGTTAGGGGCCAAGCTCTTGAACCCCGGCGGCCTCCCCGCATGCTC
TCAGCTTAATAACTCTCCTTTCAAACCATGCGCGTTGGGGGACCTTTCCG
GGCGACATGGTACCTTAGCGGTACCCGCTACAGACGCACAGGCCCTCTTT
ATCACAGACTTTCTGCCTTTATCTGGGGACCAAAGCGTGATAGGGAAATC
CTTGGTGATTGAGAAAACTGGCACAACGCCTGCGGCGTGCGCGAATATTA
TCAAGAGCGCGTCTTCATCTAGAAACTTGCGGTCTTCGTATCACTAAAGT
AATACAGCAAATGTCTTTGTGTGAAGGGCCACATGTCATAAGAAAAATGG
CCTTTGGGGGCCGCGTACTCGCGCCGGGGAGCTAGAAATATGCCGAAAGG
GGTGTAATTGAATGCTTCTTTTCCAGAGCTCTGGACAGGAACGATGAAGA
AATAATTCACCGCTCACTTAATCACCATCTATATGGGAGGCAGGACAAGT
TTTAGCTCGCCGCTTCCCTGCGCGGTTTCTTCTCGGCGTCGGCTCATGG

protein sequence of rna2989

>rna2989-protein ID=rna2989-protein|Name=rna2989|organism=Nannochloropsis gaditana|type=polypeptide|length=368bp
MPPPAESDPHNLQHEMLPSPIQTLDMDAYRDQTTSLSCREAECRKAALSL
ETTGCLYVRDSRVREADSNAFLDMLESYFAASDGKRDARPDLYYQVGVTP
AMIETPRNHCTRASSLPPLHRPLTLCPPHADPKWRFFWRVGPHPPTPSKF
QPLNAPPVVPPDYPYWSKVMDMWGGKMLQAVWGVAEAVAEGFGLPPDSFT
RRMEYGPHLLAPTGSDFGRHGALGTVLAGYHYDLNFLTIHGRARFPGLSV
WLRDGRKIPVRVPAGCLLVQAGRQMEHLTGGRVLAGFHEVAVGSETVEAI
ARRKAEGGSLWRVSSTLFSHIASDQVLRPLLGKGGGREGTATGEEGYPPL
MAGELVMEELRAIKLGGE

mRNA from alignment at CM002460.1:426030..429859+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2989 ID=rna2989|Name=rna2989|organism=Nannochloropsis gaditana|type=mRNA|length=3830bp|location=Sequence derived from alignment at CM002460.1:426030..429859+ (Nannochloropsis gaditana)
AAAAGAAGCATTCAATTACACCCCTTTCGGCATATTTCTAGCTCCCCGGC
GCGAGTACGCGGCCCCCAAAGGCCATTTTTCTTATGACATGTGGCCCTTC
ACACAAAGACATTTGCTGTATTACTTTAGTGATACGAAGACCGCAAGTTT
CTAGATGAAGACGCGCTCTTGATAATATTCGCGCACGCCGCAGGCGTTGT
GCCAGTTTTCTCAATCACCAAGGATTTCCCTATCACGCTTTGGTCCCCAG
ATAAAGGCAGAAAGTCTGTGATAAAGAGGGCCTGTGCGTCTGTAGCGGGT
ACCGCTAAGGTACCATGTCGCCCGGAAAGGTCCCCCAACGCGCATGGTTT
GAAAGGAGAGTTATTAAGCTGAGAGCATGcggggaggccgccggggTTCA
AGAGCTTGGCCCCTAACGACCCACAAGGTGCATCATAAACAGCGAAAGAC
ACGGGGTCACTGGGTGCAGCACTTCCGTCAGCTACCACGACATCCATAAA
GATGGTGGTGTCGGCGATGTTACTGTCCTGCGGCTGGGTAAATATGGCCT
TGCCCACATAAGGGCCCTCCGTGAATTCTGCCGTAGCGGTGACAAGGGCT
TGATCCTTGTACATGATGGTGCCGCAAGCGAAGCGAGTACCGTCTTTCTC
ATGAATGACGATCGATCGTCCCATAATGCTGGAGTTTagttgaaaaaaaa
agaagagcatTAAATCACCGGGGACTGGCAAGGAAGCAAGCACGAAGATC
CCGCTGCCACGACTCACCTGTTGAATCCGAAGAGGGTCAAGTGGGGATCT
GTGATGGACCTTTGCACGTCACCACCTGTCAACAGCTGGGATATAAGAAA
CGAATGTGAAGCACTACGATCGCACAGATTCAGGAGAGGGAGTCCCCTGA
GGTCGAAAGAGACCCCCCCGAGACCCCTCTGCGGGCGCGTGCAGGAGGCG
CGAGCCCCGGACTCACCCCGAACTTGGTAGAGAGGTCGCCAGCCTCGCAC
TCTGTCGCATCCTTGCAAGTTTTATAGGTGGCAGTCACGTTGAAGGGGTT
GTAGTGCCCCGACGTGGAATTGGCGGAGCAGCCGTCCTGAACAGGGAGAC
GATGGATGTGCCAGGGCCCAACAGAGTCCCTTAGCGTCGTCAAGTTCAAC
TTCATTTCTAGGGGGCTTTTAAAGGTTGCCTGGCTTAGATGGACATCTCC
AGTCACACCATTATTAAATACAACCACAGCCTCTTTGGGTTGCAGTCCCG
GATCAGAACCCGGGCTCGCATGATTCACGGCAGCTGCTGTTTGTGCGATT
AAAAAAACGGGACAGGATAAAAGACGTCTGTTGAGGCTCTAAAAAGCTTA
TATCGACGTAGCATTACAAGGGATCATGCCTGTTTCTTTCGAATGCGCAA
CGCTGACCCTTAGCAAGGACATCCCCCAGAACAAGGATCAAGAAGCGTTT
TATGTTGAGCTTGTGCTATAGAACGCGAAGAACacggggaaaaggacagc
AGAGGGGAACTGGATCCATAGATTTGATTACGAGGCATCTGTTCAATGAT
TTCGATATCCAACATTGAGAATAGGAACGAAAAATTATCGCACAGGAAAC
AGCCGATAGCCAGAGGGGGGTCCTAAACACTAGGCGTTGTGGATATGTTG
CCTGAATCCATTGTTGACGGGGCGCATCAAGAGTTTCCTTAAAAAACCAA
TAACATTGATCGAAACAGTGTATCCATTACGGATTTTTTTGCGTGTGACG
CGGATTACATGTGGCAGGAGCGCGACCTAAGGGTATTTGCAGCGCGCTGT
GCCGGAGTAAGATCGAAGGCTTGAGGAACACAGACGTACCTGTCAGGACC
AGCCATGTCGCGCCTAGGACTAGACGCAGCGGCATATTTGTCTCGGATGC
TTTGAATCAACCGTCCTGCGTAAAATCGGTGAAATGGCCACGTCAAACCA
TAGTGTGGGAGAGATGTTGCACCTGAAGGCCTGATTTTTCGTGCTTCCGT
CGGGGAAATCGCTTGGGCGCAAATATCTCCTCGCCGTGTGCCGCTGGGAA
CAAAACTTCAACAGGTTTCTACCCTACCACGGTGCCACAAATGCCTGAGA
CCGGTACATGATAAATGTATTCGCTTGTTGGCTCACATAACCATTATACC
TGTCTAGTAGTAGGCGCAAGTCCAAGATGCCACCGCCCGCAGAATCAGAC
CCCCACAATGTAAGTGCCCAAGTGACTTGAAGACCACGTAATCAATTGAG
TCCGGACAACCTCTCTGCGTGAGACTATCCTTTGCAAAAAATTGCAGCGT
GCTAGATAATTCTACAATATCCCGTGTTTGTTTTCTAGTCGCTGTGTCCG
CAGTTGGCGCAATTCACTCTCTCATGATGAATGACCGCGGTTACCCTCAG
GCCTGGTCTTCTTTAGCGTGAAGCCTGGCCATTCCCGTGTATAGGCGACT
TCTTCACTAGCAGAGTCTCATTCTCCCCgactctttccttctcttgctAG
CTACAGCACGAaatgctcccctcccccataCAGACCCTGGACATGGACGC
GTACCGCGACCAAACCACCTCCCTGTCGTGTCGCGAGGCAGAGTGTCGAA
AAGCAGCACTCAGCCTCGAGACTACGGGCTGCTTATATGTGCGAGACTCT
CGAGTACGTGAGGCAGACAGTAACGCTTTCTTAGATATGCTTGAAAGCTA
CTTTGCCGCATCCGACGGCAAGCGTGACGCCCGCCCTGACCTGTACTATC
AAGTGGGAGTCACCCCCGCCATGATCGAGACGCCTCGCAACCACTGCACC
CGTGCCtccagccttcctccactccatCGTCCACTCACCCTTTGCCCTCC
GCACGCAGATCCCAAATGGCGCTTCTTCTGGCGCGTGGGCCCgcaccctc
ccaccccctccaagTTCCAGCCTCTTAACGCCCCGCCCGTCGTCCCTCCG
GATTACCCCTACTGGTCGAAGGTGATGGAcatgtggggagggaagatgct
GCAGGCGGTCTGGGGCGTGgcagaggccgtggcggagggcTTCGGGCTGC
CCCCGGACTCCTTCACGCGTCGCATGGAGTATGGGCCCCACCTGTTGGCG
CCGACAGGCTCGGACTTTGGGAGGCACGGGGCGCTGGGGACGGTCTTGGC
GGGGTACCACTACGACCTGAATTTCCTGACCATTCACGGACGGGCCCGAT
TCCCGGGTCTAAGCGTGTGGCTGCGCGATGGGAGGAAGATCCCGGTGAGG
GTGCCGGCGGGGTGCCTGCTggtgcaggcagggaggcaaaTGGAGCACCT
GACGGGGGGTAGGGTGCTGGCGGGCTTCCACGAGGTGGCCGTGGGGTCGG
AGACAGTGGAGGCAATAGCAcggagaaaggcggagggggggtcCCTGTGG
CGAGTGTCCTCGACGCTCTTCAGTCATATCGCCTCCGACCAGGTCTTGCG
GCCTTTgctggggaaaggggggggcagggaggggactgCAACTGGAGAAG
AAGGTTATCCGCCGCTCATGGCGGGGGAgctggtgatggaggagctgcgt
gCTATcaagctgggaggggagtagggagaggacagggggcGGACGAGCTT
CGGTCGGCAAGGTCTGGGAGTTTAATACGAAAGCAACGACCCAAGATGTC
CTGGCTCATCTGGACAATAGAGCGCATTGCGATAGAGAGAGGACTCTGCC
GAGCCCCTGTGTCTCCCTCGGGGACCTCGCCCGGGCGCGGGCGAGGTCCG
GGACTGAGAGGAGGTTCCCGCCAACTCAAATCGTCAACGCATTTTATTGT
TACAGTCCGCATGCATACAACCcctttgcc

Coding sequence (CDS) from alignment at CM002460.1:426030..429859+

>rna2989 ID=rna2989|Name=rna2989|organism=Nannochloropsis gaditana|type=CDS|length=2214bp|location=Sequence derived from alignment at CM002460.1:426030..429859+ (Nannochloropsis gaditana)
ATGCCACCGCCCGCAGAATCAGACCCCCACAATCTACAGCACGAaatgct
cccctcccccataCAGACCCTGGACATGGACGCGTACCGCGACCAAACCA
CCTCCCTGTCGTGTCGCGAGGCAGAGTGTCGAAAAGCAGCACTCAGCCTC
GAGACTACGGGCTGCTTATATGTGCGAGACTCTCGAGTACGTGAGGCAGA
CAGTAACGCTTTCTTAGATATGCTTGAAAGCTACTTTGCCGCATCCGACG
GCAAGCGTGACGCCCGCCCTGACCTGTACTATCAAGTGGGAGTCACCCCC
GCCATGATCGAGACGCCTCGCAACCACTGCACCCGTGCCtccagccttcc
tccactccatCGTCCACTCACCCTTTGCCCTCCGCACGCAGATCCCAAAT
GGCGCTTCTTCTGGCGCGTGGGCCCgcaccctcccaccccctccaagTTC
CAGCCTCTTAACGCCCCGCCCGTCGTCCCTCCGGATTACCCCTACTGGTC
GAAGGTGATGGAcatgtggggagggaagatgctGCAGGCGGTCTGGGGCG
TGgcagaggccgtggcggagggcTTCGGGCTGCCCCCGGACTCCTTCACG
CGTCGCATGGAGTATGGGCCCCACCTGTTGGCGCCGACAGGCTCGGACTT
TGGGAGGCACGGGGCGCTGGGGACGGTCTTGGCGGGGTACCACTACGACC
TGAATTTCCTGACCATTCACGGACGGGCCCGATTCCCGGGTCTAAGCGTG
TGGCTGCGCGATGGGAGGAAGATCCCGGTGAGGGTGCCGGCGGGGTGCCT
GCTggtgcaggcagggaggcaaaTGGAGCACCTGACGGGGGGTAGGGTGC
TGGCGGGCTTCCACGAGGTGGCCGTGGGGTCGGAGACAGTGGAGGCAATA
GCAcggagaaaggcggagggggggtcCCTGTGGCGAGTGTCCTCGACGCT
CTTCAGTCATATCGCCTCCGACCAGGTCTTGCGGCCTTTgctggggaaag
gggggggcagggaggggactgCAACTGGAGAAGAAGGTTATCCGCCGCTC
ATGGCGGGGGAgctggtgatggaggagctgcgtgCTATcaagctgggagg
ggagtagATGCCACCGCCCGCAGAATCAGACCCCCACAATCTACAGCACG
AaatgctcccctcccccataCAGACCCTGGACATGGACGCGTACCGCGAC
CAAACCACCTCCCTGTCGTGTCGCGAGGCAGAGTGTCGAAAAGCAGCACT
CAGCCTCGAGACTACGGGCTGCTTATATGTGCGAGACTCTCGAGTACGTG
AGGCAGACAGTAACGCTTTCTTAGATATGCTTGAAAGCTACTTTGCCGCA
TCCGACGGCAAGCGTGACGCCCGCCCTGACCTGTACTATCAAGTGGGAGT
CACCCCCGCCATGATCGAGACGCCTCGCAACCACTGCACCCGTGCCtcca
gccttcctccactccatCGTCCACTCACCCTTTGCCCTCCGCACGCAGAT
CCCAAATGGCGCTTCTTCTGGCGCGTGGGCCCgcaccctcccaccccctc
caagTTCCAGCCTCTTAACGCCCCGCCCGTCGTCCCTCCGGATTACCCCT
ACTGGTCGAAGGTGATGGAcatgtggggagggaagatgctGCAGGCGGTC
TGGGGCGTGgcagaggccgtggcggagggcTTCGGGCTGCCCCCGGACTC
CTTCACGCGTCGCATGGAGTATGGGCCCCACCTGTTGGCGCCGACAGGCT
CGGACTTTGGGAGGCACGGGGCGCTGGGGACGGTCTTGGCGGGGTACCAC
TACGACCTGAATTTCCTGACCATTCACGGACGGGCCCGATTCCCGGGTCT
AAGCGTGTGGCTGCGCGATGGGAGGAAGATCCCGGTGAGGGTGCCGGCGG
GGTGCCTGCTggtgcaggcagggaggcaaaTGGAGCACCTGACGGGGGGT
AGGGTGCTGGCGGGCTTCCACGAGGTGGCCGTGGGGTCGGAGACAGTGGA
GGCAATAGCAcggagaaaggcggagggggggtcCCTGTGGCGAGTGTCCT
CGACGCTCTTCAGTCATATCGCCTCCGACCAGGTCTTGCGGCCTTTgctg
gggaaaggggggggcagggaggggactgCAACTGGAGAAGAAGGTTATCC
GCCGCTCATGGCGGGGGAgctggtgatggaggagctgcgtgCTATcaagc
tgggaggggagtag

Synonyms

Publications