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Properties
| Property Name | Value |
|---|
| Product | superoxide dismutase |
| Orig transcript id | gnl|cribi|Naga_100104g10.5955.mrna |
| Orig protein id | gnl|cribi|Naga_100104g10.5955 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:425903..428024 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2988 ID=rna2988|Name=rna2988|organism=Nannochloropsis gaditana|type=mRNA|length=1346bp
AGCACGAAAAATCAGGCCTTCAGGTGCAACATCTCTCCCACACTATGGTT
TGACGTGGCCATTTCACCGATTTTACGCAGGACGGTTGATTCAAAGCATC
CGAGACAAATATGCCGCTGCGTCTAGTCCTAGGCGCGACATGGCTGGTCC
TGACAGCTGCCGTGAATCATGCGAGCCCGGGTTCTGATCCGGGACTGCAA
CCCAAAGAGGCTGTGGTTGTATTTAATAATGGTGTGACTGGAGATGTCCA
TCTAAGCCAGGCAACCTTTAAAAGCCCCCTAGAAATGAAGTTGAACTTGA
CGACGCTAAGGGACTCTGTTGGGCCCTGGCACATCCATCGTCTCCCTGTT
CAGGACGGCTGCTCCGCCAATTCCACGTCGGGGCACTACAACCCCTTCAA
CGTGACTGCCACCTATAAAACTTGCAAGGATGCGACAGAGTGCGAGGCTG
GCGACCTCTCTACCAAGTTCGGGCTGTTGACAGGTGGTGACGTGCAAAGG
TCCATCACAGATCCCCACTTGACCCTCTTCGGATTCAACAGCATTATGGG
ACGATCGATCGTCATTCATGAGAAAGACGGTACTCGCTTCGCTTGCGGCA
CCATCATGTACAAGGATCAAGCCCTTGTCACCGCTACGGCAGAATTCACG
GAGGGCCCTTATGTGGGCAAGGCCATATTTACCCAGCCGCAGGACAGTAA
CATCGCCGACACCACCATCTTTATGGATGTCGTGGTAGCTGACGGAAGTG
CTGCACCCAGTGACCCCGTGTCTTTCGCTGTTTATGATGCACCTTGTGGG
TCGTTAGGGGCCAAGCTCTTGAACCCCGGCGGCCTCCCCGCATGCTCTCA
GCTTAATAACTCTCCTTTCAAACCATGCGCGTTGGGGGACCTTTCCGGGC
GACATGGTACCTTAGCGGTACCCGCTACAGACGCACAGGCCCTCTTTATC
ACAGACTTTCTGCCTTTATCTGGGGACCAAAGCGTGATAGGGAAATCCTT
GGTGATTGAGAAAACTGGCACAACGCCTGCGGCGTGCGCGAATATTATCA
AGAGCGCGTCTTCATCTAGAAACTTGCGGTCTTCGTATCACTAAAGTAAT
ACAGCAAATGTCTTTGTGTGAAGGGCCACATGTCATAAGAAAAATGGCCT
TTGGGGGCCGCGTACTCGCGCCGGGGAGCTAGAAATATGCCGAAAGGGGT
GTAATTGAATGCTTCTTTTCCAGAGCTCTGGACAGGAACGATGAAGAAAT
AATTCACCGCTCACTTAATCACCATCTATATGGGAGGCAGGACAAGTTTT
AGCTCGCCGCTTCCCTGCGCGGTTTCTTCTCGGCGTCGGCTCATGG back to topprotein sequence of rna2988 >rna2988-protein ID=rna2988-protein|Name=rna2988|organism=Nannochloropsis gaditana|type=polypeptide|length=328bp
MPLRLVLGATWLVLTAAAVNHASPGSDPGLQPKEAVVVFNNGVTGDVHLS
QATFKSPLEMKLNLTTLRDSVGPWHIHRLPVQDGCSANSTSGHYNPFNVT
ATYKTCKDATECEAGDLSTKFGLLTGGDVQRSITDPHLTLFGFNSIMGRS
IVIHEKDGTRFACGTIMYKDQALVTATAEFTEGPYVGKAIFTQPQDSNIA
DTTIFMDVVVADGSAAPSDPVSFAVYDAPCGSLGAKLLNPGGLPACSQLN
NSPFKPCALGDLSGRHGTLAVPATDAQALFITDFLPLSGDQSVIGKSLVI
EKTGTTPAACANIIKSASSSRNLRSSYH back to topmRNA from alignment at CM002460.1:425903..428024- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2988 ID=rna2988|Name=rna2988|organism=Nannochloropsis gaditana|type=mRNA|length=2122bp|location=Sequence derived from alignment at CM002460.1:425903..428024- (Nannochloropsis gaditana)
AGCACGAAAAATCAGGCCTTCAGGTGCAACATCTCTCCCACACTATGGTT
TGACGTGGCCATTTCACCGATTTTACGCAGGACGGTTGATTCAAAGCATC
CGAGACAAATATGCCGCTGCGTCTAGTCCTAGGCGCGACATGGCTGGTCC
TGACAGGTACGTCTGTGTTCCTCAAGCCTTCGATCTTACTCCGGCACAGC
GCGCTGCAAATACCCTTAGGTCGCGCTCCTGCCACATGTAATCCGCGTCA
CACGCAAAAAAATCCGTAATGGATACACTGTTTCGATCAATGTTATTGGT
TTTTTAAGGAAACTCTTGATGCGCCCCGTCAACAATGGATTCAGGCAACA
TATCCACAACGCCTAGTGTTTAGGACCCCCCTCTGGCTATCGGCTGTTTC
CTGTGCGATAATTTTTCGTTCCTATTCTCAATGTTGGATATCGAAATCAT
TGAACAGATGCCTCGTAATCAAATCTATGGATCCAGTTCCCCTCTGCTGT
CCTTTTCCCCGTGTTCTTCGCGTTCTATAGCACAAGCTCAACATAAAACG
CTTCTTGATCCTTGTTCTGGGGGATGTCCTTGCTAAGGGTCAGCGTTGCG
CATTCGAAAGAAACAGGCATGATCCCTTGTAATGCTACGTCGATATAAGC
TTTTTAGAGCCTCAACAGACGTCTTTTATCCTGTCCCGTTTTTTTAATCG
CACAAACAGCAGCTGCCGTGAATCATGCGAGCCCGGGTTCTGATCCGGGA
CTGCAACCCAAAGAGGCTGTGGTTGTATTTAATAATGGTGTGACTGGAGA
TGTCCATCTAAGCCAGGCAACCTTTAAAAGCCCCCTAGAAATGAAGTTGA
ACTTGACGACGCTAAGGGACTCTGTTGGGCCCTGGCACATCCATCGTCTC
CCTGTTCAGGACGGCTGCTCCGCCAATTCCACGTCGGGGCACTACAACCC
CTTCAACGTGACTGCCACCTATAAAACTTGCAAGGATGCGACAGAGTGCG
AGGCTGGCGACCTCTCTACCAAGTTCGGGGTGAGTCCGGGGCTCGCGCCT
CCTGCACGCGCCCGCAGAGGGGTCTCGGGGGGGTCTCTTTCGACCTCAGG
GGACTCCCTCTCCTGAATCTGTGCGATCGTAGTGCTTCACATTCGTTTCT
TATATCCCAGCTGTTGACAGGTGGTGACGTGCAAAGGTCCATCACAGATC
CCCACTTGACCCTCTTCGGATTCAACAGGTGAGTCGTGGCAGCGGGATCT
TCGTGCTTGCTTCCTTGCCAGTCCCCGGTGATTTAATGCTCTTCTTTTTT
TTTCAACTAAACTCCAGCATTATGGGACGATCGATCGTCATTCATGAGAA
AGACGGTACTCGCTTCGCTTGCGGCACCATCATGTACAAGGATCAAGCCC
TTGTCACCGCTACGGCAGAATTCACGGAGGGCCCTTATGTGGGCAAGGCC
ATATTTACCCAGCCGCAGGACAGTAACATCGCCGACACCACCATCTTTAT
GGATGTCGTGGTAGCTGACGGAAGTGCTGCACCCAGTGACCCCGTGTCTT
TCGCTGTTTATGATGCACCTTGTGGGTCGTTAGGGGCCAAGCTCTTGAAC
CCCGGCGGCCTCCCCGCATGCTCTCAGCTTAATAACTCTCCTTTCAAACC
ATGCGCGTTGGGGGACCTTTCCGGGCGACATGGTACCTTAGCGGTACCCG
CTACAGACGCACAGGCCCTCTTTATCACAGACTTTCTGCCTTTATCTGGG
GACCAAAGCGTGATAGGGAAATCCTTGGTGATTGAGAAAACTGGCACAAC
GCCTGCGGCGTGCGCGAATATTATCAAGAGCGCGTCTTCATCTAGAAACT
TGCGGTCTTCGTATCACTAAAGTAATACAGCAAATGTCTTTGTGTGAAGG
GCCACATGTCATAAGAAAAATGGCCTTTGGGGGCCGCGTACTCGCGCCGG
GGAGCTAGAAATATGCCGAAAGGGGTGTAATTGAATGCTTCTTTTCCAGA
GCTCTGGACAGGAACGATGAAGAAATAATTCACCGCTCACTTAATCACCA
TCTATATGGGAGGCAGGACAAGTTTTAGCTCGCCGCTTCCCTGCGCGGTT
TCTTCTCGGCGTCGGCTCATGG back to topCoding sequence (CDS) from alignment at CM002460.1:425903..428024- >rna2988 ID=rna2988|Name=rna2988|organism=Nannochloropsis gaditana|type=CDS|length=3948bp|location=Sequence derived from alignment at CM002460.1:425903..428024- (Nannochloropsis gaditana)
CATTATGGGACGATCGATCGTCATTCATGAGAAAGACGGTACTCGCTTCG
CTTGCGGCACCATCATGTACAAGGATCAAGCCCTTGTCACCGCTACGGCA
GAATTCACGGAGGGCCCTTATGTGGGCAAGGCCATATTTACCCAGCCGCA
GGACAGTAACATCGCCGACACCACCATCTTTATGGATGTCGTGGTAGCTG
ACGGAAGTGCTGCACCCAGTGACCCCGTGTCTTTCGCTGTTTATGATGCA
CCTTGTGGGTCGTTAGGGGCCAAGCTCTTGAACCCCGGCGGCCTCCCCGC
ATGCTCTCAGCTTAATAACTCTCCTTTCAAACCATGCGCGTTGGGGGACC
TTTCCGGGCGACATGGTACCTTAGCGGTACCCGCTACAGACGCACAGGCC
CTCTTTATCACAGACTTTCTGCCTTTATCTGGGGACCAAAGCGTGATAGG
GAAATCCTTGGTGATTGAGAAAACTGGCACAACGCCTGCGGCGTGCGCGA
ATATTATCAAGAGCGCGTCTTCATCTAGAAACTTGCGGTCTTCGTATCAC
TAACTGTTGACAGGTGGTGACGTGCAAAGGTCCATCACAGATCCCCACTT
GACCCTCTTCGGATTCAACAGCAGCTGCCGTGAATCATGCGAGCCCGGGT
TCTGATCCGGGACTGCAACCCAAAGAGGCTGTGGTTGTATTTAATAATGG
TGTGACTGGAGATGTCCATCTAAGCCAGGCAACCTTTAAAAGCCCCCTAG
AAATGAAGTTGAACTTGACGACGCTAAGGGACTCTGTTGGGCCCTGGCAC
ATCCATCGTCTCCCTGTTCAGGACGGCTGCTCCGCCAATTCCACGTCGGG
GCACTACAACCCCTTCAACGTGACTGCCACCTATAAAACTTGCAAGGATG
CGACAGAGTGCGAGGCTGGCGACCTCTCTACCAAGTTCGGGATGCCGCTG
CGTCTAGTCCTAGGCGCGACATGGCTGGTCCTGACAGCATTATGGGACGA
TCGATCGTCATTCATGAGAAAGACGGTACTCGCTTCGCTTGCGGCACCAT
CATGTACAAGGATCAAGCCCTTGTCACCGCTACGGCAGAATTCACGGAGG
GCCCTTATGTGGGCAAGGCCATATTTACCCAGCCGCAGGACAGTAACATC
GCCGACACCACCATCTTTATGGATGTCGTGGTAGCTGACGGAAGTGCTGC
ACCCAGTGACCCCGTGTCTTTCGCTGTTTATGATGCACCTTGTGGGTCGT
TAGGGGCCAAGCTCTTGAACCCCGGCGGCCTCCCCGCATGCTCTCAGCTT
AATAACTCTCCTTTCAAACCATGCGCGTTGGGGGACCTTTCCGGGCGACA
TGGTACCTTAGCGGTACCCGCTACAGACGCACAGGCCCTCTTTATCACAG
ACTTTCTGCCTTTATCTGGGGACCAAAGCGTGATAGGGAAATCCTTGGTG
ATTGAGAAAACTGGCACAACGCCTGCGGCGTGCGCGAATATTATCAAGAG
CGCGTCTTCATCTAGAAACTTGCGGTCTTCGTATCACTAACTGTTGACAG
GTGGTGACGTGCAAAGGTCCATCACAGATCCCCACTTGACCCTCTTCGGA
TTCAACAGCAGCTGCCGTGAATCATGCGAGCCCGGGTTCTGATCCGGGAC
TGCAACCCAAAGAGGCTGTGGTTGTATTTAATAATGGTGTGACTGGAGAT
GTCCATCTAAGCCAGGCAACCTTTAAAAGCCCCCTAGAAATGAAGTTGAA
CTTGACGACGCTAAGGGACTCTGTTGGGCCCTGGCACATCCATCGTCTCC
CTGTTCAGGACGGCTGCTCCGCCAATTCCACGTCGGGGCACTACAACCCC
TTCAACGTGACTGCCACCTATAAAACTTGCAAGGATGCGACAGAGTGCGA
GGCTGGCGACCTCTCTACCAAGTTCGGGATGCCGCTGCGTCTAGTCCTAG
GCGCGACATGGCTGGTCCTGACAGCATTATGGGACGATCGATCGTCATTC
ATGAGAAAGACGGTACTCGCTTCGCTTGCGGCACCATCATGTACAAGGAT
CAAGCCCTTGTCACCGCTACGGCAGAATTCACGGAGGGCCCTTATGTGGG
CAAGGCCATATTTACCCAGCCGCAGGACAGTAACATCGCCGACACCACCA
TCTTTATGGATGTCGTGGTAGCTGACGGAAGTGCTGCACCCAGTGACCCC
GTGTCTTTCGCTGTTTATGATGCACCTTGTGGGTCGTTAGGGGCCAAGCT
CTTGAACCCCGGCGGCCTCCCCGCATGCTCTCAGCTTAATAACTCTCCTT
TCAAACCATGCGCGTTGGGGGACCTTTCCGGGCGACATGGTACCTTAGCG
GTACCCGCTACAGACGCACAGGCCCTCTTTATCACAGACTTTCTGCCTTT
ATCTGGGGACCAAAGCGTGATAGGGAAATCCTTGGTGATTGAGAAAACTG
GCACAACGCCTGCGGCGTGCGCGAATATTATCAAGAGCGCGTCTTCATCT
AGAAACTTGCGGTCTTCGTATCACTAACTGTTGACAGGTGGTGACGTGCA
AAGGTCCATCACAGATCCCCACTTGACCCTCTTCGGATTCAACAGCAGCT
GCCGTGAATCATGCGAGCCCGGGTTCTGATCCGGGACTGCAACCCAAAGA
GGCTGTGGTTGTATTTAATAATGGTGTGACTGGAGATGTCCATCTAAGCC
AGGCAACCTTTAAAAGCCCCCTAGAAATGAAGTTGAACTTGACGACGCTA
AGGGACTCTGTTGGGCCCTGGCACATCCATCGTCTCCCTGTTCAGGACGG
CTGCTCCGCCAATTCCACGTCGGGGCACTACAACCCCTTCAACGTGACTG
CCACCTATAAAACTTGCAAGGATGCGACAGAGTGCGAGGCTGGCGACCTC
TCTACCAAGTTCGGGATGCCGCTGCGTCTAGTCCTAGGCGCGACATGGCT
GGTCCTGACAGCATTATGGGACGATCGATCGTCATTCATGAGAAAGACGG
TACTCGCTTCGCTTGCGGCACCATCATGTACAAGGATCAAGCCCTTGTCA
CCGCTACGGCAGAATTCACGGAGGGCCCTTATGTGGGCAAGGCCATATTT
ACCCAGCCGCAGGACAGTAACATCGCCGACACCACCATCTTTATGGATGT
CGTGGTAGCTGACGGAAGTGCTGCACCCAGTGACCCCGTGTCTTTCGCTG
TTTATGATGCACCTTGTGGGTCGTTAGGGGCCAAGCTCTTGAACCCCGGC
GGCCTCCCCGCATGCTCTCAGCTTAATAACTCTCCTTTCAAACCATGCGC
GTTGGGGGACCTTTCCGGGCGACATGGTACCTTAGCGGTACCCGCTACAG
ACGCACAGGCCCTCTTTATCACAGACTTTCTGCCTTTATCTGGGGACCAA
AGCGTGATAGGGAAATCCTTGGTGATTGAGAAAACTGGCACAACGCCTGC
GGCGTGCGCGAATATTATCAAGAGCGCGTCTTCATCTAGAAACTTGCGGT
CTTCGTATCACTAACTGTTGACAGGTGGTGACGTGCAAAGGTCCATCACA
GATCCCCACTTGACCCTCTTCGGATTCAACAGCAGCTGCCGTGAATCATG
CGAGCCCGGGTTCTGATCCGGGACTGCAACCCAAAGAGGCTGTGGTTGTA
TTTAATAATGGTGTGACTGGAGATGTCCATCTAAGCCAGGCAACCTTTAA
AAGCCCCCTAGAAATGAAGTTGAACTTGACGACGCTAAGGGACTCTGTTG
GGCCCTGGCACATCCATCGTCTCCCTGTTCAGGACGGCTGCTCCGCCAAT
TCCACGTCGGGGCACTACAACCCCTTCAACGTGACTGCCACCTATAAAAC
TTGCAAGGATGCGACAGAGTGCGAGGCTGGCGACCTCTCTACCAAGTTCG
GGATGCCGCTGCGTCTAGTCCTAGGCGCGACATGGCTGGTCCTGACAG back to top
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