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Properties
| Property Name | Value |
|---|
| Product | superoxide dismutase |
| Orig transcript id | gnl|cribi|Naga_100104g10.5954.mrna |
| Orig protein id | gnl|cribi|Naga_100104g10.5954 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:425903..428024 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2987 ID=rna2987|Name=rna2987|organism=Nannochloropsis gaditana|type=mRNA|length=1620bp
GCTGTTGGTAATGTGTTTTGTACCCTCCAGCATCACATATGGTGGCCAAG
CCCCACATGAAGCTATATGTGTGCTGGCACCTTTTTCTCGCGTTTTTTGC
TTTGCTTGGTGCCCAGTTTTCTGGCACTCCCTACATGCTCACTCCGAGAG
GAACATGCACTTCCTGGTACAGTCTTCTCCTTGTTTGACAAATTCCTCTC
TCTGCCTTTCTCTTTTTGATGACATACCCATGTAGACAAATTTCATCTTT
TCTTCTTCAACCTTCTTCGTTGCTATGTTGCGATTCCAATCCGCAGCCGT
TTTGCTTCTGGTCTCGTTGACCTGCCTCACGAAAGAGGTGGCCGTCGCGG
CACAGAATAAGAAAGCTGGCAGCAATGGCACTTACGATGCTATGAGCGGC
CAAGGCAGTGGATATGGAGAGGATGCTGGGGCTTACTCTACACCTGCTCC
CACGCCCGCGCCTACTTCCATGTACGGAAGTGGGGGCGACAGTCCCACTC
CGAGCCCGACGCCCGGCCTTAAGCCTACTTCCAGCCCCGCCCCCGCGCCC
ACGGCCCCCCCCACGTCTACCCCTGGGGATACTCCTACCGCACCACCGAC
CACTACGACATCTCCCACAGCTGCCCCTACTGGCGCACCCACGGGCGCAC
CCACGGGCGCACCTACGCCGGCTCCCACGCCGAACATGGCCATTATGGCG
CTGGATGTGATTCTCATCAACAACAACACCTGGACCAACCCCATCACTGG
TGGCCACTACGAGCAAAACAACTATTTGCTCGTGAACAACGGTACTAGGA
ACGTCTGCGACGTGGTCATGATCGCCCCAGTCAGCCGCGAGGAATTTCCT
GCTGGCAACACCTCCTCGCCCCCCTTCCTCAGCTCCTATGTGGTTGAAAG
CAGCGGCATTACCGACGGGGAGATGGAGTTGACTTTACCCTCCTTGGCCG
CCACGGTGTTTGGATATGGACATGTGATCGCTTTTGGATATATTCTTGAA
GGTGATTGGGATGGAAGCATTACTCGCGGTCCCGTGTTTGTGGCCGATGC
ACGTTTTTGTGAGGGCAAGGAGACTCGTCTCCGAGGCAGGAGTCTGGTCG
GTGGTCGTTCAGTCTAATGGCTGATACTTTCGAGTAAAGGGCTTAAAACA
AATTATCAACGCGTGGAGTTGCACGCATTCCACTAAGTATTATGTCGAGA
AAGGCGCCAAAGCCAGATACCAGGATGCTTTAAGGGTTCAGCGTTCAGTG
GCACACGGGCAGCAGTGGTACTTTTAAGCGTCGTATATAGAAGACGCTAG
AAATGATGATGAAAAACGCGTGTAGAACTTATGGGAAAGCGAGTCACGTG
TTCGATTGTAGAGCAAAACGTGAGGTGAGGGATTGCGAATTGAGATATTT
AGATTCACAGAACACGAGAGGAGGTCAGGTGGAAAGTCTTTGCCATCTGT
ACGTGTAAACGGATGCCACCCACGCGACATCGAAATGATGAGTCGTGTGC
GGCCACGAAAGAGTCGATTTAGGTCAGAGTGAAACGACAACAGGACAATC
TTAACAGGCCACGCTCGCTTGGATTATGTAATTCTTTGCTTCAACGGCTT
TCAAAGTTAGAGTCTTTCTC back to topprotein sequence of rna2987 >rna2987-protein ID=rna2987-protein|Name=rna2987|organism=Nannochloropsis gaditana|type=polypeptide|length=327bp
MPLRLVLGATWLVLTAAVNHASPGSDPGLQPKEAVVVFNNGVTGDVHLSQ
ATFKSPLEMKLNLTTLRDSVGPWHIHRLPVQDGCSANSTSGHYNPFNVTA
TYKTCKDATECEAGDLSTKFGLLTGGDVQRSITDPHLTLFGFNSIMGRSI
VIHEKDGTRFACGTIMYKDQALVTATAEFTEGPYVGKAIFTQPQDSNIAD
TTIFMDVVVADGSAAPSDPVSFAVYDAPCGSLGAKLLNPGGLPACSQLNN
SPFKPCALGDLSGRHGTLAVPATDAQALFITDFLPLSGDQSVIGKSLVIE
KTGTTPAACANIIKSASSSRNLRSSYH back to topmRNA from alignment at CM002460.1:425903..428024- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2987 ID=rna2987|Name=rna2987|organism=Nannochloropsis gaditana|type=mRNA|length=2122bp|location=Sequence derived from alignment at CM002460.1:425903..428024- (Nannochloropsis gaditana)
AGCACGAAAAATCAGGCCTTCAGGTGCAACATCTCTCCCACACTATGGTT
TGACGTGGCCATTTCACCGATTTTACGCAGGACGGTTGATTCAAAGCATC
CGAGACAAATATGCCGCTGCGTCTAGTCCTAGGCGCGACATGGCTGGTCC
TGACAGGTACGTCTGTGTTCCTCAAGCCTTCGATCTTACTCCGGCACAGC
GCGCTGCAAATACCCTTAGGTCGCGCTCCTGCCACATGTAATCCGCGTCA
CACGCAAAAAAATCCGTAATGGATACACTGTTTCGATCAATGTTATTGGT
TTTTTAAGGAAACTCTTGATGCGCCCCGTCAACAATGGATTCAGGCAACA
TATCCACAACGCCTAGTGTTTAGGACCCCCCTCTGGCTATCGGCTGTTTC
CTGTGCGATAATTTTTCGTTCCTATTCTCAATGTTGGATATCGAAATCAT
TGAACAGATGCCTCGTAATCAAATCTATGGATCCAGTTCCCCTCTGCTGT
CCTTTTCCCCGTGTTCTTCGCGTTCTATAGCACAAGCTCAACATAAAACG
CTTCTTGATCCTTGTTCTGGGGGATGTCCTTGCTAAGGGTCAGCGTTGCG
CATTCGAAAGAAACAGGCATGATCCCTTGTAATGCTACGTCGATATAAGC
TTTTTAGAGCCTCAACAGACGTCTTTTATCCTGTCCCGTTTTTTTAATCG
CACAAACAGCAGCTGCCGTGAATCATGCGAGCCCGGGTTCTGATCCGGGA
CTGCAACCCAAAGAGGCTGTGGTTGTATTTAATAATGGTGTGACTGGAGA
TGTCCATCTAAGCCAGGCAACCTTTAAAAGCCCCCTAGAAATGAAGTTGA
ACTTGACGACGCTAAGGGACTCTGTTGGGCCCTGGCACATCCATCGTCTC
CCTGTTCAGGACGGCTGCTCCGCCAATTCCACGTCGGGGCACTACAACCC
CTTCAACGTGACTGCCACCTATAAAACTTGCAAGGATGCGACAGAGTGCG
AGGCTGGCGACCTCTCTACCAAGTTCGGGGTGAGTCCGGGGCTCGCGCCT
CCTGCACGCGCCCGCAGAGGGGTCTCGGGGGGGTCTCTTTCGACCTCAGG
GGACTCCCTCTCCTGAATCTGTGCGATCGTAGTGCTTCACATTCGTTTCT
TATATCCCAGCTGTTGACAGGTGGTGACGTGCAAAGGTCCATCACAGATC
CCCACTTGACCCTCTTCGGATTCAACAGGTGAGTCGTGGCAGCGGGATCT
TCGTGCTTGCTTCCTTGCCAGTCCCCGGTGATTTAATGCTCTTCTTTTTT
TTTCAACTAAACTCCAGCATTATGGGACGATCGATCGTCATTCATGAGAA
AGACGGTACTCGCTTCGCTTGCGGCACCATCATGTACAAGGATCAAGCCC
TTGTCACCGCTACGGCAGAATTCACGGAGGGCCCTTATGTGGGCAAGGCC
ATATTTACCCAGCCGCAGGACAGTAACATCGCCGACACCACCATCTTTAT
GGATGTCGTGGTAGCTGACGGAAGTGCTGCACCCAGTGACCCCGTGTCTT
TCGCTGTTTATGATGCACCTTGTGGGTCGTTAGGGGCCAAGCTCTTGAAC
CCCGGCGGCCTCCCCGCATGCTCTCAGCTTAATAACTCTCCTTTCAAACC
ATGCGCGTTGGGGGACCTTTCCGGGCGACATGGTACCTTAGCGGTACCCG
CTACAGACGCACAGGCCCTCTTTATCACAGACTTTCTGCCTTTATCTGGG
GACCAAAGCGTGATAGGGAAATCCTTGGTGATTGAGAAAACTGGCACAAC
GCCTGCGGCGTGCGCGAATATTATCAAGAGCGCGTCTTCATCTAGAAACT
TGCGGTCTTCGTATCACTAAAGTAATACAGCAAATGTCTTTGTGTGAAGG
GCCACATGTCATAAGAAAAATGGCCTTTGGGGGCCGCGTACTCGCGCCGG
GGAGCTAGAAATATGCCGAAAGGGGTGTAATTGAATGCTTCTTTTCCAGA
GCTCTGGACAGGAACGATGAAGAAATAATTCACCGCTCACTTAATCACCA
TCTATATGGGAGGCAGGACAAGTTTTAGCTCGCCGCTTCCCTGCGCGGTT
TCTTCTCGGCGTCGGCTCATGG back to topCoding sequence (CDS) from alignment at CM002460.1:425903..428024- >rna2987 ID=rna2987|Name=rna2987|organism=Nannochloropsis gaditana|type=CDS|length=3936bp|location=Sequence derived from alignment at CM002460.1:425903..428024- (Nannochloropsis gaditana)
CATTATGGGACGATCGATCGTCATTCATGAGAAAGACGGTACTCGCTTCG
CTTGCGGCACCATCATGTACAAGGATCAAGCCCTTGTCACCGCTACGGCA
GAATTCACGGAGGGCCCTTATGTGGGCAAGGCCATATTTACCCAGCCGCA
GGACAGTAACATCGCCGACACCACCATCTTTATGGATGTCGTGGTAGCTG
ACGGAAGTGCTGCACCCAGTGACCCCGTGTCTTTCGCTGTTTATGATGCA
CCTTGTGGGTCGTTAGGGGCCAAGCTCTTGAACCCCGGCGGCCTCCCCGC
ATGCTCTCAGCTTAATAACTCTCCTTTCAAACCATGCGCGTTGGGGGACC
TTTCCGGGCGACATGGTACCTTAGCGGTACCCGCTACAGACGCACAGGCC
CTCTTTATCACAGACTTTCTGCCTTTATCTGGGGACCAAAGCGTGATAGG
GAAATCCTTGGTGATTGAGAAAACTGGCACAACGCCTGCGGCGTGCGCGA
ATATTATCAAGAGCGCGTCTTCATCTAGAAACTTGCGGTCTTCGTATCAC
TAACTGTTGACAGGTGGTGACGTGCAAAGGTCCATCACAGATCCCCACTT
GACCCTCTTCGGATTCAACAGCTGCCGTGAATCATGCGAGCCCGGGTTCT
GATCCGGGACTGCAACCCAAAGAGGCTGTGGTTGTATTTAATAATGGTGT
GACTGGAGATGTCCATCTAAGCCAGGCAACCTTTAAAAGCCCCCTAGAAA
TGAAGTTGAACTTGACGACGCTAAGGGACTCTGTTGGGCCCTGGCACATC
CATCGTCTCCCTGTTCAGGACGGCTGCTCCGCCAATTCCACGTCGGGGCA
CTACAACCCCTTCAACGTGACTGCCACCTATAAAACTTGCAAGGATGCGA
CAGAGTGCGAGGCTGGCGACCTCTCTACCAAGTTCGGGATGCCGCTGCGT
CTAGTCCTAGGCGCGACATGGCTGGTCCTGACAGCATTATGGGACGATCG
ATCGTCATTCATGAGAAAGACGGTACTCGCTTCGCTTGCGGCACCATCAT
GTACAAGGATCAAGCCCTTGTCACCGCTACGGCAGAATTCACGGAGGGCC
CTTATGTGGGCAAGGCCATATTTACCCAGCCGCAGGACAGTAACATCGCC
GACACCACCATCTTTATGGATGTCGTGGTAGCTGACGGAAGTGCTGCACC
CAGTGACCCCGTGTCTTTCGCTGTTTATGATGCACCTTGTGGGTCGTTAG
GGGCCAAGCTCTTGAACCCCGGCGGCCTCCCCGCATGCTCTCAGCTTAAT
AACTCTCCTTTCAAACCATGCGCGTTGGGGGACCTTTCCGGGCGACATGG
TACCTTAGCGGTACCCGCTACAGACGCACAGGCCCTCTTTATCACAGACT
TTCTGCCTTTATCTGGGGACCAAAGCGTGATAGGGAAATCCTTGGTGATT
GAGAAAACTGGCACAACGCCTGCGGCGTGCGCGAATATTATCAAGAGCGC
GTCTTCATCTAGAAACTTGCGGTCTTCGTATCACTAACTGTTGACAGGTG
GTGACGTGCAAAGGTCCATCACAGATCCCCACTTGACCCTCTTCGGATTC
AACAGCTGCCGTGAATCATGCGAGCCCGGGTTCTGATCCGGGACTGCAAC
CCAAAGAGGCTGTGGTTGTATTTAATAATGGTGTGACTGGAGATGTCCAT
CTAAGCCAGGCAACCTTTAAAAGCCCCCTAGAAATGAAGTTGAACTTGAC
GACGCTAAGGGACTCTGTTGGGCCCTGGCACATCCATCGTCTCCCTGTTC
AGGACGGCTGCTCCGCCAATTCCACGTCGGGGCACTACAACCCCTTCAAC
GTGACTGCCACCTATAAAACTTGCAAGGATGCGACAGAGTGCGAGGCTGG
CGACCTCTCTACCAAGTTCGGGATGCCGCTGCGTCTAGTCCTAGGCGCGA
CATGGCTGGTCCTGACAGCATTATGGGACGATCGATCGTCATTCATGAGA
AAGACGGTACTCGCTTCGCTTGCGGCACCATCATGTACAAGGATCAAGCC
CTTGTCACCGCTACGGCAGAATTCACGGAGGGCCCTTATGTGGGCAAGGC
CATATTTACCCAGCCGCAGGACAGTAACATCGCCGACACCACCATCTTTA
TGGATGTCGTGGTAGCTGACGGAAGTGCTGCACCCAGTGACCCCGTGTCT
TTCGCTGTTTATGATGCACCTTGTGGGTCGTTAGGGGCCAAGCTCTTGAA
CCCCGGCGGCCTCCCCGCATGCTCTCAGCTTAATAACTCTCCTTTCAAAC
CATGCGCGTTGGGGGACCTTTCCGGGCGACATGGTACCTTAGCGGTACCC
GCTACAGACGCACAGGCCCTCTTTATCACAGACTTTCTGCCTTTATCTGG
GGACCAAAGCGTGATAGGGAAATCCTTGGTGATTGAGAAAACTGGCACAA
CGCCTGCGGCGTGCGCGAATATTATCAAGAGCGCGTCTTCATCTAGAAAC
TTGCGGTCTTCGTATCACTAACTGTTGACAGGTGGTGACGTGCAAAGGTC
CATCACAGATCCCCACTTGACCCTCTTCGGATTCAACAGCTGCCGTGAAT
CATGCGAGCCCGGGTTCTGATCCGGGACTGCAACCCAAAGAGGCTGTGGT
TGTATTTAATAATGGTGTGACTGGAGATGTCCATCTAAGCCAGGCAACCT
TTAAAAGCCCCCTAGAAATGAAGTTGAACTTGACGACGCTAAGGGACTCT
GTTGGGCCCTGGCACATCCATCGTCTCCCTGTTCAGGACGGCTGCTCCGC
CAATTCCACGTCGGGGCACTACAACCCCTTCAACGTGACTGCCACCTATA
AAACTTGCAAGGATGCGACAGAGTGCGAGGCTGGCGACCTCTCTACCAAG
TTCGGGATGCCGCTGCGTCTAGTCCTAGGCGCGACATGGCTGGTCCTGAC
AGCATTATGGGACGATCGATCGTCATTCATGAGAAAGACGGTACTCGCTT
CGCTTGCGGCACCATCATGTACAAGGATCAAGCCCTTGTCACCGCTACGG
CAGAATTCACGGAGGGCCCTTATGTGGGCAAGGCCATATTTACCCAGCCG
CAGGACAGTAACATCGCCGACACCACCATCTTTATGGATGTCGTGGTAGC
TGACGGAAGTGCTGCACCCAGTGACCCCGTGTCTTTCGCTGTTTATGATG
CACCTTGTGGGTCGTTAGGGGCCAAGCTCTTGAACCCCGGCGGCCTCCCC
GCATGCTCTCAGCTTAATAACTCTCCTTTCAAACCATGCGCGTTGGGGGA
CCTTTCCGGGCGACATGGTACCTTAGCGGTACCCGCTACAGACGCACAGG
CCCTCTTTATCACAGACTTTCTGCCTTTATCTGGGGACCAAAGCGTGATA
GGGAAATCCTTGGTGATTGAGAAAACTGGCACAACGCCTGCGGCGTGCGC
GAATATTATCAAGAGCGCGTCTTCATCTAGAAACTTGCGGTCTTCGTATC
ACTAACTGTTGACAGGTGGTGACGTGCAAAGGTCCATCACAGATCCCCAC
TTGACCCTCTTCGGATTCAACAGCTGCCGTGAATCATGCGAGCCCGGGTT
CTGATCCGGGACTGCAACCCAAAGAGGCTGTGGTTGTATTTAATAATGGT
GTGACTGGAGATGTCCATCTAAGCCAGGCAACCTTTAAAAGCCCCCTAGA
AATGAAGTTGAACTTGACGACGCTAAGGGACTCTGTTGGGCCCTGGCACA
TCCATCGTCTCCCTGTTCAGGACGGCTGCTCCGCCAATTCCACGTCGGGG
CACTACAACCCCTTCAACGTGACTGCCACCTATAAAACTTGCAAGGATGC
GACAGAGTGCGAGGCTGGCGACCTCTCTACCAAGTTCGGGATGCCGCTGC
GTCTAGTCCTAGGCGCGACATGGCTGGTCCTGACAG back to top
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