rna2986, rna2986 (mRNA) Nannochloropsis gaditana

Overview
Namerna2986
Unique Namerna2986
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2400
Alignment locationCM002460.1:424178..425797 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100104g9.5943.mrna
Orig protein idgnl|cribi|Naga_100104g9.5943
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:424178..425797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100104g9gene2866Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27680.1cds2978Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2986rna2986-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2986 ID=rna2986|Name=rna2986|organism=Nannochloropsis gaditana|type=mRNA|length=2400bp
CTGGACAGGCTAGAAGTTTCTCACGTTGTCTATGAGCTGGAGGCTTCTTG
CCGGGGGCCGCGGTCGCTTAGAATGGTTGATTTGCCTGATCTGTTGCTTT
CAGACGGCTTCCACCGCGTTGGCCTTCGTGTGTGGTCAGGGAGGTCTTTT
GAGCGGCCTCGTGTCGAAACACGATAGGAGATCATCACAGTCCACAGGAT
TTCGAGAGGGCTTGCCTTCTGGCCTTCGTTTACATCATTTGCCACCTCAA
GGGATTGGGAGGCACGATGAGACGCCGGTTGTTGCGCTTTTTAGTAGGAC
AGTCCAGGAAGATGAGACCCGCGGGACGCGTGTGGGATCTAATCCGGCAT
TGACGCCTGGTAAAGGCATCCGGGCGCAACGGCTAAAGGACCTGCTTCTA
GAGAAGGAACTGCGGAACGACATCTCCACCGCCGAGTTCGCACTAAGACT
CGACGTGCCTCGTGTGGAGAGCGAAGCAGTAGATGCGAAGGTTTCGAAGA
GCGGGGTGGGGGAGGGCCGAAAAACGCCATACACCCCCAAACTAAAGCCG
CGGGGAGTCATTGACTACGAAAAGATCGCCGAAAAGCTCGAAAAGAGCCT
GGAGCTGATCGACCGGCGACAAGAGCGTCTTTCCGCGGCGGTAAGTCGAG
ATTCGCGCTTGTCTGGAAACTCGGAAGGCGATCCCGCGAGTGGCACTCAT
TTCGTAGGAGAGGAGGCTGCCCTTCGCGTGACTCGGCGCCTGAGCGAGAC
CCGCACCGAGCTTCAAAATGTCTTGTTCCGGGTTCGAGCTTCCATGGCAA
GCGCTGCCAGTGATGGAGGCGGTAAGTTTACCAGCGGAGGAGGCGGTGGC
AGCAGCAGCAGCAGCAAGGGGGGCAACAGCAGCAGTGCCTTTGTCGGGGC
TGCGTCTGGGACGGCCGCTGCGGGTGGGGTACCGGGGGGGGAGGAGAGCG
AGCGGTCGTTGAACCCTTTGACCGTCTTCGTGAGGGAGGACGGGACTGTG
GACTGGGACGGGGCTTTTCAAAGCGGAAAAGAACTTGCCAAGTACAGCGG
GGAAGTCTTGGAGCGACTGCAGGGCAAGAGCCCAGGGGAAGAGGCGCCGC
CAGCCAAAGCCAGCACGAGCCTCGCGACCATAGACAGTAGTCCGGGGATG
CAGCTCCTCCAGCGGTATTTGCAGGAGCTCGAATCAGAGCTGCGCGCGGC
TGAGGATGAACGCGACAAGTGAGTGGTCCCTGGGCTCCGAGTGGGGCGCA
ACCAATGTTTCTTAGGGCGCGGGGGCAAGTGGATGACGAAGTGGTGTTGG
GGACACGCCTATTAGCTCATCGTCGCGAGGCTCACCCTTGGGCTTGACTC
CATCACACACGTCAGGATCTTGGAGCTGCACAAAGCACTGCGGAAGCAGA
ACCTGGACGTGAGCAAGGCCCAGAAAGGGGAGCTTCGGATCGCGGAGGAC
CAGGCCGTGGAGATGAAAAGACGCGTCGAGCTTCAGCGGCTAGACATGGA
CATGGAGCGTGCGTGTGCTTACATAGAACAGGAAATTGAGCAATCTACTT
CAATCCGTGAGCAGAAGTTGCTTGTCGCTGAGTTTGGCCTCCTTGATGCC
CAACTCTCTACGCTACTGACAATGCTGCAGGCGGCCGAGCCAAACTTGGA
CGCATCTTCTTGCTTGATGGATTTAGACGAGGATGAGTTGCGAGTAGTTG
CGAGTGAGGTTCAGGATTTGAAGTCACGTCTGGGCCTGATAGAAGACGCC
ACTGGTGGACCGAAGCTGGACTGGTCGCTTGTCAATACATATGTGCAGGA
CAGCATTGGAAAAATCAGAAATGGTATCTCATTCTACGTAACGGGCGCCA
AGCTTCTCACGTCAGACCTGCAATACGCGTGGTGGCTCATCTCTCGCGCG
GCGCAAGGCTACACGCTTAAGCCTCGCGAGGTCCGCACGTTACAGCGCAC
GGCCAAGGACTTGCTCACGCTGATTCCTTTTACCATCATCCTGATTTTCC
CCTTGACGCCGATCGGTCATGTACTCGTATTCTCCCTCATCCAGCGCATC
TTTCCCGATTTTTTCCCGAGCACTTTTACGGAGCGCCGTCAAAACCTCTC
CAAGATGTATGACGAGATCGACAAGAAACCCCTTGTCGAAGGACCTGCGC
CCCCCGCTAAGGGCAAATGATCTCAGTCGTGCGGAAGGGCAGGGAAGCAC
TACCGAGCACATGTATTTTTTTGCAGTAAAAATGTGATGCATTAAGAAAG
GAGCTGCACGGAATAGGAGTAAGCGGATGTCATGTAGCATAACATTACCA
ATGCACGTGCGAGTAATACGCGACGAGTCCGAGAAAGACTCTAACTTTGA
AAGCCGTTGAAGCAAAGAATTACATAATCCAAGCGAGCGTGGCCTGTTAA
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protein sequence of rna2986

>rna2986-protein ID=rna2986-protein|Name=rna2986|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MLRFQSAAVLLLVSLTCLTKEVAVAAQNKKAGSNGTYDAMSGQGSGYGED
AGAYSTPAPTPAPTSMYGSGGDSPTPSPTPGLKPTSSPAPAPTAPPTSTP
GDTPTAPPTTTTSPTAAPTGAPTGAPTGAPTPAPTPNMAIMALDVILINN
NTWTNPITGGHYEQNNYLLVNNGTRNVCDVVMIAPVSREEFPAGNTSSPP
FLSSYVVESSGITDGEMELTLPSLAATVFGYGHVIAFGYILEGDWDGSIT
RGPVFVADARFCEGKETRLRGRSLVGGRSV
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mRNA from alignment at CM002460.1:424178..425797-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2986 ID=rna2986|Name=rna2986|organism=Nannochloropsis gaditana|type=mRNA|length=1620bp|location=Sequence derived from alignment at CM002460.1:424178..425797- (Nannochloropsis gaditana)
GCTGTTGGTAATGTGTTTTGTACCCTCCAGCATCACATATGGTGGCCAAG
CCCCACATGAAGCTATATGTGTGCTGGCACCTTTTTCTCGCGTTTTTTGC
TTTGCTTGGTGCCCAGTTTTCTGGCACTCCCTACATGCTCACTCCGAGAG
GAACATGCACTTCCTGGTACAGTCTTCTCCTTGTTTGACAAATTCCTCTC
TCTGCCTTTCTCTTTTTGATGACATACCCATGTAGACAAATTTCATCTTT
TCTTCTTCAACCTTCTTCGTTGCTATGTTGCGATTCCAATCCGCAGCCGT
TTTGCTTCTGGTCTCGTTGACCTGCCTCACGAAAGAGGTGGCCGTCGCGG
CACAGAATAAGAAAGCTGGCAGCAATGGCACTTACGATGCTATGAGCGGC
CAAGGCAGTGGATATGGAGAGGATGCTGGGGCTTACTCTACACCTGCTCC
CACGCCCGCGCCTACTTCCATGTACGGAAGTGGGGGCGACAGTCCCACTC
CGAGCCCGACGCCCGGCCTTAAGCCTACTTCCAGCCCCGCCCCCGCGCCC
ACGGCCCCCCCCACGTCTACCCCTGGGGATACTCCTACCGCACCACCGAC
CACTACGACATCTCCCACAGCTGCCCCTACTGGCGCACCCACGGGCGCAC
CCACGGGCGCACCTACGCCGGCTCCCACGCCGAACATGGCCATTATGGCG
CTGGATGTGATTCTCATCAACAACAACACCTGGACCAACCCCATCACTGG
TGGCCACTACGAGCAAAACAACTATTTGCTCGTGAACAACGGTACTAGGA
ACGTCTGCGACGTGGTCATGATCGCCCCAGTCAGCCGCGAGGAATTTCCT
GCTGGCAACACCTCCTCGCCCCCCTTCCTCAGCTCCTATGTGGTTGAAAG
CAGCGGCATTACCGACGGGGAGATGGAGTTGACTTTACCCTCCTTGGCCG
CCACGGTGTTTGGATATGGACATGTGATCGCTTTTGGATATATTCTTGAA
GGTGATTGGGATGGAAGCATTACTCGCGGTCCCGTGTTTGTGGCCGATGC
ACGTTTTTGTGAGGGCAAGGAGACTCGTCTCCGAGGCAGGAGTCTGGTCG
GTGGTCGTTCAGTCTAATGGCTGATACTTTCGAGTAAAGGGCTTAAAACA
AATTATCAACGCGTGGAGTTGCACGCATTCCACTAAGTATTATGTCGAGA
AAGGCGCCAAAGCCAGATACCAGGATGCTTTAAGGGTTCAGCGTTCAGTG
GCACACGGGCAGCAGTGGTACTTTTAAGCGTCGTATATAGAAGACGCTAG
AAATGATGATGAAAAACGCGTGTAGAACTTATGGGAAAGCGAGTCACGTG
TTCGATTGTAGAGCAAAACGTGAGGTGAGGGATTGCGAATTGAGATATTT
AGATTCACAGAACACGAGAGGAGGTCAGGTGGAAAGTCTTTGCCATCTGT
ACGTGTAAACGGATGCCACCCACGCGACATCGAAATGATGAGTCGTGTGC
GGCCACGAAAGAGTCGATTTAGGTCAGAGTGAAACGACAACAGGACAATC
TTAACAGGCCACGCTCGCTTGGATTATGTAATTCTTTGCTTCAACGGCTT
TCAAAGTTAGAGTCTTTCTC
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Coding sequence (CDS) from alignment at CM002460.1:424178..425797-

>rna2986 ID=rna2986|Name=rna2986|organism=Nannochloropsis gaditana|type=CDS|length=843bp|location=Sequence derived from alignment at CM002460.1:424178..425797- (Nannochloropsis gaditana)
ATGTTGCGATTCCAATCCGCAGCCGTTTTGCTTCTGGTCTCGTTGACCTG
CCTCACGAAAGAGGTGGCCGTCGCGGCACAGAATAAGAAAGCTGGCAGCA
ATGGCACTTACGATGCTATGAGCGGCCAAGGCAGTGGATATGGAGAGGAT
GCTGGGGCTTACTCTACACCTGCTCCCACGCCCGCGCCTACTTCCATGTA
CGGAAGTGGGGGCGACAGTCCCACTCCGAGCCCGACGCCCGGCCTTAAGC
CTACTTCCAGCCCCGCCCCCGCGCCCACGGCCCCCCCCACGTCTACCCCT
GGGGATACTCCTACCGCACCACCGACCACTACGACATCTCCCACAGCTGC
CCCTACTGGCGCACCCACGGGCGCACCCACGGGCGCACCTACGCCGGCTC
CCACGCCGAACATGGCCATTATGGCGCTGGATGTGATTCTCATCAACAAC
AACACCTGGACCAACCCCATCACTGGTGGCCACTACGAGCAAAACAACTA
TTTGCTCGTGAACAACGGTACTAGGAACGTCTGCGACGTGGTCATGATCG
CCCCAGTCAGCCGCGAGGAATTTCCTGCTGGCAACACCTCCTCGCCCCCC
TTCCTCAGCTCCTATGTGGTTGAAAGCAGCGGCATTACCGACGGGGAGAT
GGAGTTGACTTTACCCTCCTTGGCCGCCACGGTGTTTGGATATGGACATG
TGATCGCTTTTGGATATATTCTTGAAGGTGATTGGGATGGAAGCATTACT
CGCGGTCCCGTGTTTGTGGCCGATGCACGTTTTTGTGAGGGCAAGGAGAC
TCGTCTCCGAGGCAGGAGTCTGGTCGGTGGTCGTTCAGTCTAA
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Synonyms
Publications