rna2984, rna2984 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2984
Unique Name	rna2984
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	375
Alignment location	CM002460.1:419031..420719 -

Link to JBrowse

Properties


Property Name	Value
Product	dnaj subfamily b member 12
Orig transcript id	gnl\|cribi\|Naga_100104g7.5946.mrna
Orig protein id	gnl\|cribi\|Naga_100104g7.5946
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:419031..420719 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100104g7	gene2864	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2984	rna2984-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27683.1	cds2976	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:419031..420719-
coding sequence from alignment at CM002460.1:419031..420719-

mRNA sequence

>rna2984 ID=rna2984|Name=rna2984|organism=Nannochloropsis gaditana|type=mRNA|length=375bp
ATGCTTGAGCGATCAACACGACCCCGGGCCCCAAATAGTCCGATCACCAA
GAGAGCCATGCCCAACTGGTGGAATCTTCCTTTCCGAGACTTCGTGGTCA
AAGAGGTAATGCGCCCGGGCTTCAGGGAGTTCGCCGTTGGGGCCGCCGTG
GTCTTCTTCGGACTCGGACTGAAAATCAATGCCGGCATCACGGACAAGGA
CCGGGAGGAGAGCCCCTACTACCAAGACTTCCTCGCCCCTAAGAAGGAGG
GCCCTCATGGGTTTAGTTGCTTGAGGGGTGTGGACTTAACGCGGTCACGC
GGCGATCTGTGCGCAGCTTGGGCTGTATGTGCGACCGGCTTTTGTTTTCC
CAAAGAAGAAAAATGGGGAAGTTAG

protein sequence of rna2984

>rna2984-protein ID=rna2984-protein|Name=rna2984|organism=Nannochloropsis gaditana|type=polypeptide|length=400bp
MEMNKDEAERCLELGRKFLRDGSYAKAIKFLDKSLKLYPLPGVEALKARA
ESEWERSTGSTSRNGGGSNSANADGGAGQLPRRRAPGGGGEGGGGGSKAG
QNGRSYSEEQVVACRTIIQSKKKGHYEVLSVSRTATDDQIKKSYRKLALK
FHPDKNAAPQADEAFKAISTAFQVLSDPDKRRSYDQFGDDDGTEGMGGQA
HPFRHADVSPEEIFNMFFGVNGGGRPANFRVYRSHHDQRNPFFRYQQQQQ
HRQGQAQPPLGALPQVLQLLPVLLLLFLSLFSFPQESERAFSLHRTDRHP
LQRSTSMEHILPNIPYFVGQSFGRDYARDRRRLFQVEREVQQSYLYDLQR
QCEGQKQNKVRRVQAARRLFNAEERAKRMAEADALPLEACRLFQEATRLL

mRNA from alignment at CM002460.1:419031..420719-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2984 ID=rna2984|Name=rna2984|organism=Nannochloropsis gaditana|type=mRNA|length=1689bp|location=Sequence derived from alignment at CM002460.1:419031..420719- (Nannochloropsis gaditana)
TACTCCGACGTGTCATCGAGACATTTACTGGTGGCTGATATTACGGGTTG
CATACGGCAGAAGTCATGTCCTGCCACCCCTTTTCTCGCTCATCCCCCTT
ACACCCACATCCCCTCTTCCCTCCGCTTCCGGCGCAGGTATAGCGGGCAA
CACCGGGGCACAGAGACATTGGGATTGGATAGCCCTCACATCTGCTATTT
TAAGTATGGAGATGAACAAAGACGAGGCAGAGCGCTGCCTGGAACTCGGA
CGCAAGTTTTTGCGGGATGGTTCATACGCCAAAGCCATCAAATTTCTCGA
CAAATCCCTCAAGCTGTATCCCTTGCCGGGAGTGGAGGCACTTAAAGCAC
GGGCCGAGTCCGAGTGGGAACGATCAACCGGCAGTACCAGCCGGAATGGC
GGCGGCAGCAATAGTGCGAATGCGGATGGTGGTGCGGGGCAATTACCACG
ACGACGAGCGCCGGGGGGCGGAGGCGAGGGTGGTGGAGGAGGGTCAAAAG
CCGGTCAAAATGGACGCTCGTACTCGGAGGAGCAGGTGGTGGCGTGTCGC
ACTATCATTCAGTCGAAGAAGAAGGGGCATTACGAGGTGTTGAGCGTCTC
GCGTACAGCCACGGACGATCAAATAAAGAAGTCGTACCGGAAGCTGGCCC
TGAAGTTCCATCCTGACAAGAACGCGGCGCCCCAGGCGGACGAGGCCTTC
AAGGTAAGAAGTTGCGTCATTTTAAGTATGCTTGTCCTAGGCTTCATAAT
TCGGATCCGCATTTGTGCCTGGTCGCCGAGATCACCGTGACTTAAGCTGC
CCCCATTCCATGTCTTCAGGCTATCAGCACGGCCTTCCAGGTCCTCAGCG
ACCCGGACAAGCGGCGGTCCTACGACCAGTTCGGCGACGACGACGGCACA
GAGGGGATGGGCGGCCAAGCGCACCCCTTCCGACACGCAGATGTCTCGCC
CGAGGAAATCTTCAACATGTTTTTCGGCGTGAACGGTGGCGGTCGGCCCG
CAAATTTCCGTGTCTACAGGTCTCACCATGATCAGCGCAACCCTTTCTTC
CGGTACCAGCAGCAGCAGCAGCACCGACAGGGGCAGGCTCAGCCTCCTCT
CGGGTACGTGGGAGGGGGGACGGGGGGGTTGGAGCATAGGGCAGAGTGAC
GTAGAAGGAGGGCGGGGGGGTTGCCGGAAGCTGATGGTGACTCAATCCAG
CCTGCGGGAGTACTAATGCGACGACGCTCCTGACTCATGCCCGCTACCCT
TTCTTCCCTCCCTCACAGCGCCCTGCCCCAAGTCCTGCAGCTCCTCCCCG
TTCTCCTCCTCCTCTTCCTCTCCCTCTTCTCCTTCCCTCAGGAGAGCGAG
CGGGCCTTCTCCCTGCATCGCACAGATCGGCACCCCCTGCAGCGGTCCAC
CTCCATGGAGCACATCCTCCCCAACATCCCTTACTTCGTCGGCCAGTCCT
TTGGACGCGACTACGCGCGAGACCGGCGCCGGCTCTTCCAAGTGGAGAGG
GAGGTCCAGCAATCCTACTTGTACGACCTGCAGCGCCAGTGCGAGGGGCA
GAAGCAGAACAAGGTCCGACGGGTGCAGGCGGCGCGAAGGCTGTTCAATG
CGGAAGAGCGCGCCAAGCGGATGGCGGAAGCGGACGCGCTCCCTTTGGAG
GCCTGCCGTCTCTTTCAAGAGGCCACCCGGCTGTTGTAA

Coding sequence (CDS) from alignment at CM002460.1:419031..420719-

>rna2984 ID=rna2984|Name=rna2984|organism=Nannochloropsis gaditana|type=CDS|length=3609bp|location=Sequence derived from alignment at CM002460.1:419031..420719- (Nannochloropsis gaditana)
CGCCCTGCCCCAAGTCCTGCAGCTCCTCCCCGTTCTCCTCCTCCTCTTCC
TCTCCCTCTTCTCCTTCCCTCAGGAGAGCGAGCGGGCCTTCTCCCTGCAT
CGCACAGATCGGCACCCCCTGCAGCGGTCCACCTCCATGGAGCACATCCT
CCCCAACATCCCTTACTTCGTCGGCCAGTCCTTTGGACGCGACTACGCGC
GAGACCGGCGCCGGCTCTTCCAAGTGGAGAGGGAGGTCCAGCAATCCTAC
TTGTACGACCTGCAGCGCCAGTGCGAGGGGCAGAAGCAGAACAAGGTCCG
ACGGGTGCAGGCGGCGCGAAGGCTGTTCAATGCGGAAGAGCGCGCCAAGC
GGATGGCGGAAGCGGACGCGCTCCCTTTGGAGGCCTGCCGTCTCTTTCAA
GAGGCCACCCGGCTGTTGTAAGCTATCAGCACGGCCTTCCAGGTCCTCAG
CGACCCGGACAAGCGGCGGTCCTACGACCAGTTCGGCGACGACGACGGCA
CAGAGGGGATGGGCGGCCAAGCGCACCCCTTCCGACACGCAGATGTCTCG
CCCGAGGAAATCTTCAACATGTTTTTCGGCGTGAACGGTGGCGGTCGGCC
CGCAAATTTCCGTGTCTACAGGTCTCACCATGATCAGCGCAACCCTTTCT
TCCGGTACCAGCAGCAGCAGCAGCACCGACAGGGGCAGGCTCAGCCTCCT
CTCGGATGGAGATGAACAAAGACGAGGCAGAGCGCTGCCTGGAACTCGGA
CGCAAGTTTTTGCGGGATGGTTCATACGCCAAAGCCATCAAATTTCTCGA
CAAATCCCTCAAGCTGTATCCCTTGCCGGGAGTGGAGGCACTTAAAGCAC
GGGCCGAGTCCGAGTGGGAACGATCAACCGGCAGTACCAGCCGGAATGGC
GGCGGCAGCAATAGTGCGAATGCGGATGGTGGTGCGGGGCAATTACCACG
ACGACGAGCGCCGGGGGGCGGAGGCGAGGGTGGTGGAGGAGGGTCAAAAG
CCGGTCAAAATGGACGCTCGTACTCGGAGGAGCAGGTGGTGGCGTGTCGC
ACTATCATTCAGTCGAAGAAGAAGGGGCATTACGAGGTGTTGAGCGTCTC
GCGTACAGCCACGGACGATCAAATAAAGAAGTCGTACCGGAAGCTGGCCC
TGAAGTTCCATCCTGACAAGAACGCGGCGCCCCAGGCGGACGAGGCCTTC
AAGCGCCCTGCCCCAAGTCCTGCAGCTCCTCCCCGTTCTCCTCCTCCTCT
TCCTCTCCCTCTTCTCCTTCCCTCAGGAGAGCGAGCGGGCCTTCTCCCTG
CATCGCACAGATCGGCACCCCCTGCAGCGGTCCACCTCCATGGAGCACAT
CCTCCCCAACATCCCTTACTTCGTCGGCCAGTCCTTTGGACGCGACTACG
CGCGAGACCGGCGCCGGCTCTTCCAAGTGGAGAGGGAGGTCCAGCAATCC
TACTTGTACGACCTGCAGCGCCAGTGCGAGGGGCAGAAGCAGAACAAGGT
CCGACGGGTGCAGGCGGCGCGAAGGCTGTTCAATGCGGAAGAGCGCGCCA
AGCGGATGGCGGAAGCGGACGCGCTCCCTTTGGAGGCCTGCCGTCTCTTT
CAAGAGGCCACCCGGCTGTTGTAAGCTATCAGCACGGCCTTCCAGGTCCT
CAGCGACCCGGACAAGCGGCGGTCCTACGACCAGTTCGGCGACGACGACG
GCACAGAGGGGATGGGCGGCCAAGCGCACCCCTTCCGACACGCAGATGTC
TCGCCCGAGGAAATCTTCAACATGTTTTTCGGCGTGAACGGTGGCGGTCG
GCCCGCAAATTTCCGTGTCTACAGGTCTCACCATGATCAGCGCAACCCTT
TCTTCCGGTACCAGCAGCAGCAGCAGCACCGACAGGGGCAGGCTCAGCCT
CCTCTCGGATGGAGATGAACAAAGACGAGGCAGAGCGCTGCCTGGAACTC
GGACGCAAGTTTTTGCGGGATGGTTCATACGCCAAAGCCATCAAATTTCT
CGACAAATCCCTCAAGCTGTATCCCTTGCCGGGAGTGGAGGCACTTAAAG
CACGGGCCGAGTCCGAGTGGGAACGATCAACCGGCAGTACCAGCCGGAAT
GGCGGCGGCAGCAATAGTGCGAATGCGGATGGTGGTGCGGGGCAATTACC
ACGACGACGAGCGCCGGGGGGCGGAGGCGAGGGTGGTGGAGGAGGGTCAA
AAGCCGGTCAAAATGGACGCTCGTACTCGGAGGAGCAGGTGGTGGCGTGT
CGCACTATCATTCAGTCGAAGAAGAAGGGGCATTACGAGGTGTTGAGCGT
CTCGCGTACAGCCACGGACGATCAAATAAAGAAGTCGTACCGGAAGCTGG
CCCTGAAGTTCCATCCTGACAAGAACGCGGCGCCCCAGGCGGACGAGGCC
TTCAAGCGCCCTGCCCCAAGTCCTGCAGCTCCTCCCCGTTCTCCTCCTCC
TCTTCCTCTCCCTCTTCTCCTTCCCTCAGGAGAGCGAGCGGGCCTTCTCC
CTGCATCGCACAGATCGGCACCCCCTGCAGCGGTCCACCTCCATGGAGCA
CATCCTCCCCAACATCCCTTACTTCGTCGGCCAGTCCTTTGGACGCGACT
ACGCGCGAGACCGGCGCCGGCTCTTCCAAGTGGAGAGGGAGGTCCAGCAA
TCCTACTTGTACGACCTGCAGCGCCAGTGCGAGGGGCAGAAGCAGAACAA
GGTCCGACGGGTGCAGGCGGCGCGAAGGCTGTTCAATGCGGAAGAGCGCG
CCAAGCGGATGGCGGAAGCGGACGCGCTCCCTTTGGAGGCCTGCCGTCTC
TTTCAAGAGGCCACCCGGCTGTTGTAAGCTATCAGCACGGCCTTCCAGGT
CCTCAGCGACCCGGACAAGCGGCGGTCCTACGACCAGTTCGGCGACGACG
ACGGCACAGAGGGGATGGGCGGCCAAGCGCACCCCTTCCGACACGCAGAT
GTCTCGCCCGAGGAAATCTTCAACATGTTTTTCGGCGTGAACGGTGGCGG
TCGGCCCGCAAATTTCCGTGTCTACAGGTCTCACCATGATCAGCGCAACC
CTTTCTTCCGGTACCAGCAGCAGCAGCAGCACCGACAGGGGCAGGCTCAG
CCTCCTCTCGGATGGAGATGAACAAAGACGAGGCAGAGCGCTGCCTGGAA
CTCGGACGCAAGTTTTTGCGGGATGGTTCATACGCCAAAGCCATCAAATT
TCTCGACAAATCCCTCAAGCTGTATCCCTTGCCGGGAGTGGAGGCACTTA
AAGCACGGGCCGAGTCCGAGTGGGAACGATCAACCGGCAGTACCAGCCGG
AATGGCGGCGGCAGCAATAGTGCGAATGCGGATGGTGGTGCGGGGCAATT
ACCACGACGACGAGCGCCGGGGGGCGGAGGCGAGGGTGGTGGAGGAGGGT
CAAAAGCCGGTCAAAATGGACGCTCGTACTCGGAGGAGCAGGTGGTGGCG
TGTCGCACTATCATTCAGTCGAAGAAGAAGGGGCATTACGAGGTGTTGAG
CGTCTCGCGTACAGCCACGGACGATCAAATAAAGAAGTCGTACCGGAAGC
TGGCCCTGAAGTTCCATCCTGACAAGAACGCGGCGCCCCAGGCGGACGAG
GCCTTCAAG

Synonyms

Publications