rna2981, rna2981 (mRNA) Nannochloropsis gaditana

Overview
Namerna2981
Unique Namerna2981
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length204
Alignment locationCM002460.1:412693..414499 +

Link to JBrowse

Properties
Property NameValue
Productcdp-ethanolamine:dag ethanolamine phosphotransferase
Orig transcript idgnl|cribi|Naga_100104g4.5950.mrna
Orig protein idgnl|cribi|Naga_100104g4.5950
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:412693..414499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100104g4gene2861Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2981rna2981-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27687.1cds2973Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2981 ID=rna2981|Name=rna2981|organism=Nannochloropsis gaditana|type=mRNA|length=204bp
ATGGATGCTTATGGACATGAGAACATGATTTTGATCCGCGCAGGACGCTG
TTTTTGTGCGTTGATAGATGCCGGGTGGAAATTTATTGACGGCGAGCACG
GTTTTGAAAAGCAATCTGAGTTGCTGGCAGGGTGCCGTGATCATTTGAAG
GAAGAACGAGCCATTGCACCCGCTTTACAACCTCTATATGACGCTAGGAA
GTGA
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protein sequence of rna2981

>rna2981-protein ID=rna2981-protein|Name=rna2981|organism=Nannochloropsis gaditana|type=polypeptide|length=431bp
MRESVCPHNGVQPPTERTGGGSRWVLSELALEGVATYRYVSGSSTFLDRV
LNHFWNWAVQWLPLWVAPNLVTLLGLAFMLASAALIVVVDKSLTAPMSPQ
VAVFCAFSLFAYQTLDAIDGKQARRTGTSSPLGELFDHGCDALNAVFIFT
VLAATWRLGDHPWLMLTVLFNIFFAFFMGQWEEYHTGLMMTNNGYIGVTE
GQIVQIIILLVTATFGASFWDKPVLRLGVHEGAMVVTVKAVGLTWGCLLT
LWVSLGSLYRVLLSGQARSLPVGEVGNKVLGRREAVRQLLPVLLSFLLGA
MWTVGHGQHVFLEHPVGVLLALGLTMAYLSTRMIVSHMAKQPFGSAELIL
PVLPQVLVLANTHCRLLSEPISALGAQWGGQSLPLPDVVVMWLYVALITV
AYAYFSVGATEDICAYLGLHCLSIHPRMKAA
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mRNA from alignment at CM002460.1:412693..414499+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2981 ID=rna2981|Name=rna2981|organism=Nannochloropsis gaditana|type=mRNA|length=1807bp|location=Sequence derived from alignment at CM002460.1:412693..414499+ (Nannochloropsis gaditana)
AGCGGTCTGCTCGCGTGCTCATCGCCCCCATTCCTACCCATCCCTACTCC
GTAGCAACACCCCTGGACGACGCTTAAGGCCTAAACGAGAGCCGGCACGG
GTCGAGGGCAGCCGAGGGTGCCATGCGCGAAAGTGTCTGCCCGCACAATG
GAGTCCAGCCTCCGACTGAGCGGACGGGGGGCGGCAGCAGGTAGGACATG
AAAGTGGTTGGGGGTTGCGTGTTATCTGCCGTCCCCCGCGTACTGGCTtc
gtagggagggagacagagtTGGAGAGACTTTGTTGTTGCGGGAGCGGCTC
GGGATTCGACCCCCGAGGCGTGTATTCATGCACTTTTGTCACATTTCTTG
GTGCACACTTTGGAAACGTACCCCAAGGTGGGTTCTCTCAGAGCTAGCAT
TAGAAGGCGTGGCCACTTACAGGTATGTCTCCGGGTCCTCGACATTCCTG
GATCGTGTGCTCAATCACTTCTGGAATTGGGCCGTCCAATGGCTCCCCCT
GTGGGTCGCGCCCAATCTGGTTACTCTCTTGGGTCTCGCCTTCATGCTCG
CCTCGGCGGCACTTATTGTAGTCGTCGACAAAAGCTTGACGGCACCTATG
TCGCCCCAGGTTGCCGTCTTTTGCGCCTTCAGTCTCTTCGCCTACCAGAC
GCTGGACGCGATCGACGGGAAACAGGCGAGGCGCACGggcacgtcctccc
ctctgggCGAGCTTTTCGACCACGGGTGCGACGCGCTCAACGCGGTGTTC
ATCTTCACCGTCTTGGCGGCCACCTGGAGACTGGGGGACCATCCTTGGCT
GATGCTGACGGTCTTGTTCAACATTTTTTTCGCCTTCTTCATGGGCCAGT
GGGAGGAGTACCACACGGGCCTCATGATGACCAACAACGGCTATATAGGC
GTCACCGAGGGGCAAATCGTCCAGATTATCATCCTATTGGTGACAGCAAC
CTTTGGCGCGTCCTTTTGGGACAAGCCTGTGCTTCGGCTCGGCGTGCACG
AAGGCGCGATGGTCGTCACCGTGAAGGCTGTGGGTCTCACCTGGGGGTGC
CTGCTCACCCTCTGGGTGTCGCTCGGTAGCTTGTACCGGGTCCTCCTGTC
GGGGCAAGCGCGCAGTCTcccggtgggggaggtggggaacaAGGTCTTag
ggcggcgggaggcggtGCGGCAGCTGCTGCCGGTCTTGCTGTCCTTCCTG
TTGGGAGCCATGTGGACGGTCGGGCACGGGCAGcacgtcttcctcgagcA
CCCGGTGGGGGTCCTGCTGGCGCTAGGCCTCACGATGGCCTACCTATCCA
CGCGGATGATTGTAAGTCACATGGCCAAGCAGCCCTTTGGCTCAGCAGAG
CTgatcctgcccgtcctcccccaggtCCTGGTGCTCGCGAATACCCACTG
CCGGCTTCTTTCCGAGCCAATCTCCGCCTTAGGAGCGCAGTGGGGCGGTC
AAAGCTTGCCTTTGCCGGACGTTGTTGTCATGTGGCTCTACGTGGCGCTT
ATCACAGTCGCATATGCGTACTTTTCAGTGGGCGCCACGGAGGACATATG
TGCCTATCTAGGCCTGCATTGTCTGAGTATTCACCCGCGAATGAAGGCTG
CATAGAGTGGACGGGTCGTGGGGTCGTCACCGAGAGGATCGAGACAGATT
CCTTTCGTATAAATTCAAGGACTGTACATATAGCGTGTGCTGCAATGGAT
AGGAAATTGATGAATTGCATGCACAGAGGTTTTGGACCACAGGGCGCCCG
CCACCGATAAGGGGGACGTgcgcgagggggaagaaacaCAAAGTATCTCG
TCATCCC
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Coding sequence (CDS) from alignment at CM002460.1:412693..414499+

>rna2981 ID=rna2981|Name=rna2981|organism=Nannochloropsis gaditana|type=CDS|length=2592bp|location=Sequence derived from alignment at CM002460.1:412693..414499+ (Nannochloropsis gaditana)
ATGCGCGAAAGTGTCTGCCCGCACAATGGAGTCCAGCCTCCGACTGAGCG
GACGGGGGGCGGCAGCAGGTGGGTTCTCTCAGAGCTAGCATTAGAAGGCG
TGGCCACTTACAGGTATGTCTCCGGGTCCTCGACATTCCTGGATCGTGTG
CTCAATCACTTCTGGAATTGGGCCGTCCAATGGCTCCCCCTGTGGGTCGC
GCCCAATCTGGTTACTCTCTTGGGTCTCGCCTTCATGCTCGCCTCGGCGG
CACTTATTGTAGTCGTCGACAAAAGCTTGACGGCACCTATGTCGCCCCAG
GTTGCCGTCTTTTGCGCCTTCAGTCTCTTCGCCTACCAGACGCTGGACGC
GATCGACGGGAAACAGGCGAGGCGCACGggcacgtcctcccctctgggCG
AGCTTTTCGACCACGGGTGCGACGCGCTCAACGCGGTGTTCATCTTCACC
GTCTTGGCGGCCACCTGGAGACTGGGGGACCATCCTTGGCTGATGCTGAC
GGTCTTGTTCAACATTTTTTTCGCCTTCTTCATGGGCCAGTGGGAGGAGT
ACCACACGGGCCTCATGATGACCAACAACGGCTATATAGGCGTCACCGAG
GGGCAAATCGTCCAGATTATCATCCTATTGGTGACAGCAACCTTTGGCGC
GTCCTTTTGGGACAAGCCTGTGCTTCGGCTCGGCGTGCACGAAGGCGCGA
TGGTCGTCACCGTGAAGGCTGTGGGTCTCACCTGGGGGTGCCTGCTCACC
CTCTGGGTGTCGCTCGGTAGCTTGTACCGGGTCCTCCTGTCGGGGCAAGC
GCGCAGTCTcccggtgggggaggtggggaacaAGGTCTTagggcggcggg
aggcggtGCGGCAGCTGCTGCCGGTCTTGCTGTCCTTCCTGTTGGGAGCC
ATGTGGACGGTCGGGCACGGGCAGcacgtcttcctcgagcACCCGGTGGG
GGTCCTGCTGGCGCTAGGCCTCACGATGGCCTACCTATCCACGCGGATGA
TTGTAAGTCACATGGCCAAGCAGCCCTTTGGCTCAGCAGAGCTgatcctg
cccgtcctcccccaggtCCTGGTGCTCGCGAATACCCACTGCCGGCTTCT
TTCCGAGCCAATCTCCGCCTTAGGAGCGCAGTGGGGCGGTCAAAGCTTGC
CTTTGCCGGACGTTGTTGTCATGTGGCTCTACGTGGCGCTTATCACAGTC
GCATATGCGTACTTTTCAGTGGGCGCCACGGAGGACATATGTGCCTATCT
AGGCCTGCATTGTCTGAGTATTCACCCGCGAATGAAGGCTGCATAGATGC
GCGAAAGTGTCTGCCCGCACAATGGAGTCCAGCCTCCGACTGAGCGGACG
GGGGGCGGCAGCAGGTGGGTTCTCTCAGAGCTAGCATTAGAAGGCGTGGC
CACTTACAGGTATGTCTCCGGGTCCTCGACATTCCTGGATCGTGTGCTCA
ATCACTTCTGGAATTGGGCCGTCCAATGGCTCCCCCTGTGGGTCGCGCCC
AATCTGGTTACTCTCTTGGGTCTCGCCTTCATGCTCGCCTCGGCGGCACT
TATTGTAGTCGTCGACAAAAGCTTGACGGCACCTATGTCGCCCCAGGTTG
CCGTCTTTTGCGCCTTCAGTCTCTTCGCCTACCAGACGCTGGACGCGATC
GACGGGAAACAGGCGAGGCGCACGggcacgtcctcccctctgggCGAGCT
TTTCGACCACGGGTGCGACGCGCTCAACGCGGTGTTCATCTTCACCGTCT
TGGCGGCCACCTGGAGACTGGGGGACCATCCTTGGCTGATGCTGACGGTC
TTGTTCAACATTTTTTTCGCCTTCTTCATGGGCCAGTGGGAGGAGTACCA
CACGGGCCTCATGATGACCAACAACGGCTATATAGGCGTCACCGAGGGGC
AAATCGTCCAGATTATCATCCTATTGGTGACAGCAACCTTTGGCGCGTCC
TTTTGGGACAAGCCTGTGCTTCGGCTCGGCGTGCACGAAGGCGCGATGGT
CGTCACCGTGAAGGCTGTGGGTCTCACCTGGGGGTGCCTGCTCACCCTCT
GGGTGTCGCTCGGTAGCTTGTACCGGGTCCTCCTGTCGGGGCAAGCGCGC
AGTCTcccggtgggggaggtggggaacaAGGTCTTagggcggcgggaggc
ggtGCGGCAGCTGCTGCCGGTCTTGCTGTCCTTCCTGTTGGGAGCCATGT
GGACGGTCGGGCACGGGCAGcacgtcttcctcgagcACCCGGTGGGGGTC
CTGCTGGCGCTAGGCCTCACGATGGCCTACCTATCCACGCGGATGATTGT
AAGTCACATGGCCAAGCAGCCCTTTGGCTCAGCAGAGCTgatcctgcccg
tcctcccccaggtCCTGGTGCTCGCGAATACCCACTGCCGGCTTCTTTCC
GAGCCAATCTCCGCCTTAGGAGCGCAGTGGGGCGGTCAAAGCTTGCCTTT
GCCGGACGTTGTTGTCATGTGGCTCTACGTGGCGCTTATCACAGTCGCAT
ATGCGTACTTTTCAGTGGGCGCCACGGAGGACATATGTGCCTATCTAGGC
CTGCATTGTCTGAGTATTCACCCGCGAATGAAGGCTGCATAG
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Synonyms
Publications