rna2980, rna2980 (mRNA) Nannochloropsis gaditana

Overview
Namerna2980
Unique Namerna2980
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2107
Alignment locationCM002460.1:410338..410541 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100104g2.5949.mrna
Orig protein idgnl|cribi|Naga_100104g2.5949
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:410338..410541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100104g2gene2860Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2980rna2980-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27686.1cds2972Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2980 ID=rna2980|Name=rna2980|organism=Nannochloropsis gaditana|type=mRNA|length=2107bp
TCATTCGTTGCAGCCTTCGATGGTTCTGTACCCCCGTGTCCATTCCTGCC
TGCTCCTAGTACTCGCCTCCCTGGCCCTAGGATCGACAGCGGAGGCCTTC
GTGCCGGCGACTGCAAGTAGGAAGCCGTGGCGCTACGCCTGGCCTAACAC
CATCATGGCGAGTTCGACAACGGAAAGCGGCCGCAGCAGCGAATATGACG
TCGCGGGCGGTCCTCAACTCCCAGTACCGCCAATCGTGTGGAGCATAGCG
GGCTCTGACTCCGGGGGAGGGGCTGGCGTCCAGGCCGACCTTCAGGCATT
CCACGCTCTAGGGTGCCACGGCTGCAGTGTCATCACGGCATTGACAGCTC
AAAATAGCCATCAGGTACGCAAGGTGGAGGTATCGAGCCTAGACATGCTG
CGTACGACGCTGGCCACCCTGGAAGATGACATGCCGGCAAAAGCGATCAA
GATAGGGATGCTGGCGACGGCCGATGTGGTGAGAGCGGTCGGAATTTTCT
TATCTGAAAAGGCTACGGAAGGATCTTCAGGAGCCGTCATCTGTGATCCC
GTTATGGTGACGTCTAGCGGGTCTGTGCTTCAGGACGAGTTGGCCCGCCA
GGCTATGATCGACACCATCTTCCCTCGCGCCACACTCATAACCCCCAACA
AGCATGAGGCGGAAATGCTCGTCGGCTACACTCTACGGACACCCGAGGAC
CTGGAGAGAGCAGCGCACGATCTACTTGCCATGGGCAAGAGTGGAGCGGT
GTTGGTGAAGGGCGGCCATGCCCTGGACGGTCTGGGCGGAGAGAGGTCTG
CTTCAGGAGAGGGCCTGTTCGACGCCGCCGTGGCCCAGGACTACCTGCTG
GAGAGCAACGGGAAGTCTGGCTTGTGGATCACCTCCCCGCGACTGGAAAA
CCAAAACACGCACGGCACGGGCTGCACTCTCTCCTCGGCTGTAGCGGCCT
TTTTAGCGCAGGACCTGCCCCTGGTGGACGCGGTGGTGTTGGCCAAGGCC
TACGTCAGTCAGGGCATCCGGGCAGCAAGAAAGCTGGGCCGCGGGCCGGG
TCCCGTTCAACAGACAGGATGGCCGGCCAGTGCTTCAGATTTTCCTTGGG
TTACATCGCGTGTCGAGGAGGGATCAAAAAAGCGTCCAGGCCCCTTTGCA
GAGTGCGAGCGGGACATGGGCCTGTACGCGTGCGTGGCCTCGGCCGTGTG
GGTGCAGCGCCTTCTCGAGCTGGGCGTCAAAGACATTCAACTGCGAATCA
AGGACCGGCCGGCGCTGGAGCTGGAACACGAGGTAGCGGAAGCGGCTGAA
AGCTGCCGCAAAGCCAATGCCCGCCTGTGGGTGAACGATTACTGGGAGCT
GGCTGTTCGGTACAAGGCGTACGGGCTACACGTGGGCCAAGAGGACATGG
ACCGGCTGATGAACTCGCCCGACCTCCCTTTGGTTGCAGTCAAAAATGAA
GGCATTCGGCTTGGTGTTAGCACGCACACCTTCGCCGAGCTGGGACGTGC
CATCGCTCTTCGCCCGTCGTACATCTCGTTGGGGCCCATTTTCTCCACCA
CGTCGAAGAAGGTACGGTTCGGGCCTCAAGGCCTGGCCCGCCTGCGACAG
TGGCGTCATCTGGTTGACGTGCCGCTGGTAGCCATTGGGGGCATCGGCCT
CGAGGCAGCACAGGGAGTTCGGGATGCGGGGGCGGATGGGATATGCGTGA
TATCAGCTCTCACGCAAGCGTCGGATGTGGCCCAGGCTGTGCAGGCCTGG
CGTGCAGTCCTCCGGACAGGAAAGTAAAGGAATACGCAAACGCAGAAACA
AAAAAATGAAGCGCGCGCACAGCTCCCGCAAGTGTCCTTGTACATTCAGA
CCAATGCATATTATGTGGCTGTATGTCTGTGATTCTTCGTTCACTTCCTA
GCGTCATATAGAGGTTGTAAAGCGGGTGCAATGGCTCGTTCTTCCTTCAA
ATGATCACGGCACCCTGCCAGCAACTCAGATTGCTTTTCAAAACCGTGCT
CGCCGTCAATAAATTTCCACCCGGCATCTATCAACGCACAAAAACAGCGT
CCTGCGCGGATCAAAATCATGTTCTCATGTCCATAAGCATCCATTCACAC
CTTTTCG
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protein sequence of rna2980

>rna2980-protein ID=rna2980-protein|Name=rna2980|organism=Nannochloropsis gaditana|type=polypeptide|length=67bp
MDAYGHENMILIRAGRCFCALIDAGWKFIDGEHGFEKQSELLAGCRDHLK
EERAIAPALQPLYDARK
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mRNA from alignment at CM002460.1:410338..410541+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2980 ID=rna2980|Name=rna2980|organism=Nannochloropsis gaditana|type=mRNA|length=204bp|location=Sequence derived from alignment at CM002460.1:410338..410541+ (Nannochloropsis gaditana)
ATGGATGCTTATGGACATGAGAACATGATTTTGATCCGCGCAGGACGCTG
TTTTTGTGCGTTGATAGATGCCGGGTGGAAATTTATTGACGGCGAGCACG
GTTTTGAAAAGCAATCTGAGTTGCTGGCAGGGTGCCGTGATCATTTGAAG
GAAGAACGAGCCATTGCACCCGCTTTACAACCTCTATATGACGCTAGGAA
GTGA
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Coding sequence (CDS) from alignment at CM002460.1:410338..410541+

>rna2980 ID=rna2980|Name=rna2980|organism=Nannochloropsis gaditana|type=CDS|length=204bp|location=Sequence derived from alignment at CM002460.1:410338..410541+ (Nannochloropsis gaditana)
ATGGATGCTTATGGACATGAGAACATGATTTTGATCCGCGCAGGACGCTG
TTTTTGTGCGTTGATAGATGCCGGGTGGAAATTTATTGACGGCGAGCACG
GTTTTGAAAAGCAATCTGAGTTGCTGGCAGGGTGCCGTGATCATTTGAAG
GAAGAACGAGCCATTGCACCCGCTTTACAACCTCTATATGACGCTAGGAA
GTGA
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Synonyms
Publications