rna2977, rna2977 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2977
Unique Name	rna2977
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2787
Alignment location	CM002460.1:405238..406315 +

Link to JBrowse

Properties


Property Name	Value
Product	DNA-binding SAP
Orig transcript id	gnl\|cribi\|Naga_100034g1.6301.mrna
Orig protein id	gnl\|cribi\|Naga_100034g1.6301
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:405238..406315 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g1	gene2857	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2977	rna2977-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27728.1	cds2969	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:405238..406315+
coding sequence from alignment at CM002460.1:405238..406315+

mRNA sequence

>rna2977 ID=rna2977|Name=rna2977|organism=Nannochloropsis gaditana|type=mRNA|length=2787bp
ATGGCTGAAACGGAGCAGTGGCGCCCTGCTCAGGAGGCGTTTTCGCAAAC
AATCAACTTGTTGAGTGTTCTACGCGACCCTACAAACTCCCAGTATGCAG
AGGCACAGCGTCATTTGGAAACCCACCAGGGGGACGCCCAATTCCTTCTC
TGTCTTGCATACGTCTTGGCGGGTACGACGAGAGAGCAAGTCCCCGACCA
CGTACGGCAGCTCGCGGGGCTCCTATTGAAAAACTACGTGCTGCGACATA
CAAAAGAATTCGTGCAGGACACTGAGATGTCGGCGTCCACCGCCTCCGCC
GGGGTTCCCAGTGGGGTAGCGCCTATTACGGCCATCGCGCAAATTCGGGC
ATATGTGAAGCTCCAGGCCCTGGTTGCGGCCCGAGATGCCAATAAGTCGG
TGCGTAACACGGCTGGTATCCTCATCACGACGCTGGCCACTCATACTCTT
CGGGCGGGTGTGCCTCTGGGCGTAGCGTGGCCCGAGCTCTTTCCCGCTTT
ACTGGCCATGTTGGGCAGCGAGCAGGCGCCAGCCATCGAAGGCGCCTTCA
GCAGTCTGGTCAAAATACTCGAGGACTGCGGCCAAGAACTGCGTGCGGAC
ACTTCGGGCTACGGACCAGAGGTGCTGAACCAGCTTGTGCCCATCCTCTC
ATCCTTCTTCCGCGCCGAGGTGCCCGGGATTCGGGCAACGGCCGTGCGCG
CCATGAACCTACTGGTGCCGCTCAAGCCCGCTCAGCTGCTCGTGCACATG
GACGCCTTCATTCAGGCCCTCGCCGGCCTCCAAGACGACCCGTCGCCGCG
CGTTCGCCAGGGCGTGTGCCAGACCCTGGTCGCGCTCTTCCGAGAGGCCT
CGGACCACCTGCTCTCTCGTCTGGGCGAGGTGATGGAGTTCATGTTGGCA
AAGAGCCAGGACCAGGACGAGGACGTAGCGCGCGAGGCCTGCGAGTTTTG
GAGCGTCTTCTGTCACTACTACGGCAACGAGGGCCAGCAGCAGGTACCCG
AAGCCCTGCGCGCCTTCCTTCCCCGCCTGGTCCCCGTGCTCCTGGCCGGG
ATGGTCTTCGCCCAGGCGGACCGGGACGCCATGGAGGCCGACAAGGCGAG
CATGCTGGACTCTGTGCCCGACCGGGCCGAGGACCTGAGGCCTGTACACT
ATCAGTCTCGGGGAGATCGGGGTTTCGGCGCGGACGTCCTCCTGCCTACC
CTGTTGCCGTACTTGTACGCGAAGCTGCAGCAGGGGTCGGTGTGGGAACG
GGAAGCGTGCATCCTCGCCCTTGGGGCGGTGGCCTCCTGTATGGAGGGCA
TGGGCGAGCAGCTCTTGCAGCTCTTCCCTTTCCTCCTGCAGCAGCTTGAC
GATAAGGCGGGGATGGCGACCAACCCGCAGCTGGGATGCACGGTGGCTTG
GACCCTGGGGCGGTACGCGGGGTGGATCCTGGAGCAGCACAACGACAGCG
GCTTTCTGGCCCCACTCGTGGAGCGCCTCTTGGGGGCCATGCTCGATCCG
CACAAGAAGGTGCAGCAAGCAGCCTGCTCGGCGCTGGCCTCGCTGGAGGA
AGATGCAGGACTGCGTCTCCTCCCGTACTTGTCGCACCTCTTGGGTTTCA
TGAGCCAAGCTCTCGGCCGCTACCAGACGCGCTCCCTCATCGTCCTCTTC
GACACGCTGGGGACACTGGCCGACGCCGTCAAGCACGAGCTGGCGGCGCC
GGAGTACACTGCCTTGTTTATGCCCGCTCTGTGGGCCAAATGGGCCGCCG
TGGCGGACTCGGATCGCGTCTTGCTCTATTTGATGGAGTGCATGACATCG
CTGGCCGTCGCCCTCGGCCCGGCCTTTCAGCCCTGGGCGTCAGAGGCTTT
CGCCCGTTGCCTGCGCCTCCTGCAACAAGTCTTGGCGGCGGACTCTTCCG
GCCAAGCCTGTGACAAGGAGTTCGCGGTCTGCGCTCTGGATCTGCTCACC
GGTATGGCCGAGGGCCTGGGCTCCTCCTTGGAGAGCCTCCTGCTCGACTC
AAACCTGATGGGTGTGCTCTTTGCCTGCATGCAGGACGCTTCGGAAGACG
TCAGACAGAGCGCCTTCGCGTTGCTGGGAGACTTGGTCAAGGCCTGTCAC
CTGCATTTGGTGCCCGTCCTCCCCACTTACCTGCCGGTACTGGTGAACAA
CCTGGATCCACGCGCCGTCTCCGTCTGCAACAACGCCTCCTGGGCGTTGG
GCGAGCTGACCGTTCGAGTGGGACCCGAGCACATGACGCCGCACGTGCCG
GGTGTGATGGCGCGCTTGATCCCCATGGCCCGGCAGCGCAACGAGATGCA
TCCCCACCTTGTCGAAAATACTGCCATCACCATCGGCCGGCTGGCAAAGA
TCTGCCCTAATGCCGTGGCCACAGCACCCGGCGTGGGAGCTGATTTCGTG
CTCGCCTGGTGCCTGAGCCTGCAAGAGATCAAGCATCGGGGCGAAAAGGA
ACATGCCTTTGAGGGTCTCTGCCTGCTGTTGCAGCAAAAACCGTCCATTC
TTTTGCAACCAAGTCAAAACAGTACTGCCACTCCTGCCGCTAGCCCTCCT
TCGGTTGCTCCCACCGGCGCCGACACTTTCGAGGCTTTCGCCTGGGCCGT
GGCATCGTGGTATGACGCCGATCAAGGCCGCCCCGATGTACCCGCCGGCC
TCCAGCACATGTTCCAAGTTATTTTCAATTATGTACGAGAGACTGTCAAC
AATATGCCAGCCCAAGATTGGAATGAATATTTGAGCAGCTTGGACCCTCA
GCTCGTTTCTTATCTCGTCAGCTTTTATGAGATGTGA

protein sequence of rna2977

>rna2977-protein ID=rna2977-protein|Name=rna2977|organism=Nannochloropsis gaditana|type=polypeptide|length=290bp
MLQFASAHPPECTMRMPSARVTRSRARSPSMAEDDGIGTRSRGARASAPK
IRGISPPRPRGARAPESPALSSRGSRMRAQDQTGPLGHDTMDESKDRRKG
GIRQEHRWARRGTEDSTQPGPEAVVVPRESSKQSPGRSPQENTRSCNDIE
GDGVHLAGQPATPFQRLLKSSTSLVSSAVKGVIGLMSPWEENGRSDGDGQ
MLVAQESFSSGEYDDVHSAERVDKAAHEAAPSMAAYEDGAVELPPPEDKA
ESDESYEGQPVDSITVSELKKILREKGLSYKGRKSELAER

mRNA from alignment at CM002460.1:405238..406315+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2977 ID=rna2977|Name=rna2977|organism=Nannochloropsis gaditana|type=mRNA|length=1078bp|location=Sequence derived from alignment at CM002460.1:405238..406315+ (Nannochloropsis gaditana)
ATGCTCCAATTTGCGTCCGCTCACCCCCCTGAGTGTACAATGCGTAAGTG
ATGTTCTTGTAGGCTATGAACGAAAAGCCCTGTTGGCCACGAGGGGAGTG
TCTCGGCAGCGAGGCGCGTAGTATCAGTCTTCGCCCTGCTTCTTTCACCC
CTCATCATCTTCACCACGCGACAGGGATGCCCAGCGCACGTGTCACACGT
AGTCGAGCTCGCTCGCCCTCGATGGCGGAAGACGATGGCATAGGGACGCG
GTCGCGCGGAGCAAGAGCCAGTGCTCCTAAGATCCGTGGgatctctcctc
cccgccctcgaggAGCACGAGCCCCCGAGTCTCCAGCCCTGTCATCAAGA
GGTTCGCGAATGCGGGCCCAGGATCAAACAGGGCCACTAGGGCATGATAC
GATGGATGAAAGTAAGGATCGAAGGAAGGGTGGCATTCGGCAAGAACATC
gctgggcaaggagggggacagaggaCAGTACGCAGCCGGGGCctgaggcg
gtggtggtccCAAGAGAAAGCAGCAAGCAGTCCCCAGGGCGGTCGCCTCA
GGAAAACACGAGGTCTTGCAACGATAttgagggagacggagtCCACTTGG
CGGGCCAGCCGGCGACGCCCTTCCAGCGCCTGCTCAAGTCGAGCACCAGC
CTAGTCTCCTCCGCTGTGAAGGGGGTGATAGGTCTTATGTCCCCCTGGGA
GGAGAACGGCCGGAGCGATGGGGATGGCCAAATGTTGGTCGCCCAGGAGT
CCTTTTCCAGCGGCGAATATGACGATGTGCACTCGGCAGAGCGCGTGGAC
AAGGCAGCTCACGAGGCCGCGCCTTCCATGGCCGCTTACGAAGATGGCGC
AGTGGAGCTTCCCCCGCCCGAAGACAAGGCGGAGAGCGATGAGAGCTATG
AAGGGCAGCCAGTGGACAGCATCACCGTGTCGGAGCTGAAGAAGATCCTG
CGTGAGAAGGGGCTCTCGTAcaagggcaggaagagcgagCTTGCGGAGCG
GTTGAAGGAGTGGCTGCGCTCGCAGCGGGGCCACGGGCGGGGGTTCTCCG
GGACTCGCGGGACTGCCGGCCAAGCTAA

Coding sequence (CDS) from alignment at CM002460.1:405238..406315+

>rna2977 ID=rna2977|Name=rna2977|organism=Nannochloropsis gaditana|type=CDS|length=2619bp|location=Sequence derived from alignment at CM002460.1:405238..406315+ (Nannochloropsis gaditana)
ATGCTCCAATTTGCGTCCGCTCACCCCCCTGAGTGTACAATGCGGATGCC
CAGCGCACGTGTCACACGTAGTCGAGCTCGCTCGCCCTCGATGGCGGAAG
ACGATGGCATAGGGACGCGGTCGCGCGGAGCAAGAGCCAGTGCTCCTAAG
ATCCGTGGgatctctcctccccgccctcgaggAGCACGAGCCCCCGAGTC
TCCAGCCCTGTCATCAAGAGGTTCGCGAATGCGGGCCCAGGATCAAACAG
GGCCACTAGGGCATGATACGATGGATGAAAGTAAGGATCGAAGGAAGGGT
GGCATTCGGCAAGAACATCgctgggcaaggagggggacagaggaCAGTAC
GCAGCCGGGGCctgaggcggtggtggtccCAAGAGAAAGCAGCAAGCAGT
CCCCAGGGCGGTCGCCTCAGGAAAACACGAGGTCTTGCAACGATAttgag
ggagacggagtCCACTTGGCGGGCCAGCCGGCGACGCCCTTCCAGCGCCT
GCTCAAGTCGAGCACCAGCCTAGTCTCCTCCGCTGTGAAGGGGGTGATAG
GTCTTATGTCCCCCTGGGAGGAGAACGGCCGGAGCGATGGGGATGGCCAA
ATGTTGGTCGCCCAGGAGTCCTTTTCCAGCGGCGAATATGACGATGTGCA
CTCGGCAGAGCGCGTGGACAAGGCAGCTCACGAGGCCGCGCCTTCCATGG
CCGCTTACGAAGATGGCGCAGTGGAGCTTCCCCCGCCCGAAGACAAGGCG
GAGAGCGATGAGAGCTATGAAGGGCAGCCAGTGGACAGCATCACCGTGTC
GGAGCTGAAGAAGATCCTGCGTGAGAAGGGGCTCTCGTAcaagggcagga
agagcgagCTTGCGGAGCGCTAAATGCTCCAATTTGCGTCCGCTCACCCC
CCTGAGTGTACAATGCGGATGCCCAGCGCACGTGTCACACGTAGTCGAGC
TCGCTCGCCCTCGATGGCGGAAGACGATGGCATAGGGACGCGGTCGCGCG
GAGCAAGAGCCAGTGCTCCTAAGATCCGTGGgatctctcctccccgccct
cgaggAGCACGAGCCCCCGAGTCTCCAGCCCTGTCATCAAGAGGTTCGCG
AATGCGGGCCCAGGATCAAACAGGGCCACTAGGGCATGATACGATGGATG
AAAGTAAGGATCGAAGGAAGGGTGGCATTCGGCAAGAACATCgctgggca
aggagggggacagaggaCAGTACGCAGCCGGGGCctgaggcggtggtggt
ccCAAGAGAAAGCAGCAAGCAGTCCCCAGGGCGGTCGCCTCAGGAAAACA
CGAGGTCTTGCAACGATAttgagggagacggagtCCACTTGGCGGGCCAG
CCGGCGACGCCCTTCCAGCGCCTGCTCAAGTCGAGCACCAGCCTAGTCTC
CTCCGCTGTGAAGGGGGTGATAGGTCTTATGTCCCCCTGGGAGGAGAACG
GCCGGAGCGATGGGGATGGCCAAATGTTGGTCGCCCAGGAGTCCTTTTCC
AGCGGCGAATATGACGATGTGCACTCGGCAGAGCGCGTGGACAAGGCAGC
TCACGAGGCCGCGCCTTCCATGGCCGCTTACGAAGATGGCGCAGTGGAGC
TTCCCCCGCCCGAAGACAAGGCGGAGAGCGATGAGAGCTATGAAGGGCAG
CCAGTGGACAGCATCACCGTGTCGGAGCTGAAGAAGATCCTGCGTGAGAA
GGGGCTCTCGTAcaagggcaggaagagcgagCTTGCGGAGCGCTAAATGC
TCCAATTTGCGTCCGCTCACCCCCCTGAGTGTACAATGCGGATGCCCAGC
GCACGTGTCACACGTAGTCGAGCTCGCTCGCCCTCGATGGCGGAAGACGA
TGGCATAGGGACGCGGTCGCGCGGAGCAAGAGCCAGTGCTCCTAAGATCC
GTGGgatctctcctccccgccctcgaggAGCACGAGCCCCCGAGTCTCCA
GCCCTGTCATCAAGAGGTTCGCGAATGCGGGCCCAGGATCAAACAGGGCC
ACTAGGGCATGATACGATGGATGAAAGTAAGGATCGAAGGAAGGGTGGCA
TTCGGCAAGAACATCgctgggcaaggagggggacagaggaCAGTACGCAG
CCGGGGCctgaggcggtggtggtccCAAGAGAAAGCAGCAAGCAGTCCCC
AGGGCGGTCGCCTCAGGAAAACACGAGGTCTTGCAACGATAttgagggag
acggagtCCACTTGGCGGGCCAGCCGGCGACGCCCTTCCAGCGCCTGCTC
AAGTCGAGCACCAGCCTAGTCTCCTCCGCTGTGAAGGGGGTGATAGGTCT
TATGTCCCCCTGGGAGGAGAACGGCCGGAGCGATGGGGATGGCCAAATGT
TGGTCGCCCAGGAGTCCTTTTCCAGCGGCGAATATGACGATGTGCACTCG
GCAGAGCGCGTGGACAAGGCAGCTCACGAGGCCGCGCCTTCCATGGCCGC
TTACGAAGATGGCGCAGTGGAGCTTCCCCCGCCCGAAGACAAGGCGGAGA
GCGATGAGAGCTATGAAGGGCAGCCAGTGGACAGCATCACCGTGTCGGAG
CTGAAGAAGATCCTGCGTGAGAAGGGGCTCTCGTAcaagggcaggaagag
cgagCTTGCGGAGCGCTAA

Synonyms

Publications