rna2971, rna2971 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2971
Unique Name	rna2971
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1713
Alignment location	CM002460.1:386502..389612 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100034g8.6278.mrna
Orig protein id	gnl\|cribi\|Naga_100034g8.6278
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:386502..389612 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g8	gene2851	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27705.1	cds2963	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2971	rna2971-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:386502..389612-
coding sequence from alignment at CM002460.1:386502..389612-

mRNA sequence

>rna2971 ID=rna2971|Name=rna2971|organism=Nannochloropsis gaditana|type=mRNA|length=1713bp
ATGGCAAGAATAGTGCTGAGCGTACTGGGCCTTTTGGGACTGCTTTCCAT
AGAGGCAGTGGTTCCTGCATTCGCTTTTACAGCGCGCGGAAATCATCTTT
TGTCAGGAAGGAGAGGCGTAGAAACAGGGATCAGCCGCGTTCTGAGGAGA
CATCTACCAGCTCTTGTGCCAGATTTCGCCTGTCGTGCCGTGACTCTCAC
ACGGCCAAGACACGATAGCCCTACCCTACACGTTCATCAGGGCAGTGAGT
CTTCCTCCTCAACCGTAAAGGAGGAGACTATTCCTATCATGGACATTCCA
ACCGCCTTGATAACCAACCATTTCCCTACACCCAACTCGAATTCAAGCCT
CATATCGGCGGCCCTCGCGTTCACTGAAGGGGAGCCGGTGGACAAAGCTA
TCATGGCGAAGTGGAGAAACCTGGTCCTCCTGATTGCAGCGGCGGTGTAT
GCCACCTCCATCCTCATCACTGTGGACATGGAGAGCTGGCGGGGATGGAC
GATTCAAGAGATCATGCTCCGCATTCCTTATGACAACTGGCAGGAGTATG
AGGGAGGCTTGAGCACCCACCCAATTTTCGTCAAGACTGTGATCAACGTG
GTCATCTACGTGATCGGGGACTGGATGTCTCAGGTGGGCTGGGGTCGTAC
CAAGAACCTCTTAGATTTCGACTTGGCCCGGACGGCCCGAAACGGTTTGA
TCGGTGCCATGTTCGGCCCGCTGGTTCACTACTACTACGACTGGTCGGAC
TACATCCTCCCCATGGAGGTGCCTGTCAACCGGGTGCTGAAGCTCTTGAT
GGACCAGTCAGTCTACTTTGTGGCCAAGTGCAGCGCTTACATTGCCCTGG
TGGGTCTCCTCAGGGGTGATACTCCTGCCGTGGTGGCACAAGACGTCAAG
GAACGTATCCAGCCTGTCGTCTTCCGCGGGTGGCGTTTTTGGCCACTCGC
GCACGTGGTAACCTACGGCGTCATCCCTCCTCGGCACCGGGTTTTGTGGG
TCAACATGCTGGACCTGCTCTGGTCCTCCATCCTTGCCTCGTTGGCTTCC
AAGGAAGGCGAAGAGGACGCCTCGACTGCTTCTTCGCCTGTTCCCGAGAC
TGGCGCTGCTCTTATGAACAGCTCAGACTGGAGGGGCCCCACGGAACTCG
AGCCCGCGCCGCCCGGGGCCTCACCCGCTGAGTTTCTGGTCTCGACCACG
GAGGAGAGGCGCGCCGAGGAGGAAGAGACAGTGGGTAGGGACTTACTAGC
GGCAGTGACTGCCGTGGCTCCCGATGTAAACGAGCACACACTGCACGTTT
TACCGGATCAGTTGGTAGAAACACGCGATGCACTTAGACCGCACTCCGAC
GGCGAGTCAGGGGGAAGTGACATGGCGATCGATCCCGCGCGCAACAAGAG
TAATGAAAGCGTAAACGAAGAAGATTGGGCGCAGTTAATCGGCGTTTTAT
GTAAATTTCCAATGGCTTGTAAGGCATTCGGATTGATTGGAAGAAAGGGA
AGAAGCCGGAATGCAAACCGAGCCCGAGTGCCGCGAGGAGACAGCAGAGA
AGTACCGCATCCACACGCTCACTCATGTAGAGGGATTGAACTAGGCTTGC
CAATCCTTGAAAAATCTGATGAAAGATGTTTACGTAAAAAATGCATCCAA
AACAACAAAAGCAAGCAGTTTCGCACTCATTTTTATTTTCTTTCTCCGTT
CAAACGTACCTGA

protein sequence of rna2971

>rna2971-protein ID=rna2971-protein|Name=rna2971|organism=Nannochloropsis gaditana|type=polypeptide|length=752bp
MIEHLKLVQSHFKMFQAQTVAYHGLLDMQSFLQNKHQQGTCGRSPLSTEY
KLRLLEFELAEREDTLRKDTFKTNLLSCVDKDGCLMDLATVVQPYLQLLI
KSVSRRCWREQALLVLILRRTGLALKKRRKYSLVLEKLVRWGGLEVLKAV
VNGCLQHQQHSQERANRNAPLGDPGTLSKEVVERAVSELLVATLKALVLL
PVDIEAVKDSNMARFLSTVSQAFAAAPDSSETCKEIHHHNVVVPRLVQIV
TNKWAEFSRSTTQRRREVKTLTTAAARPPPTLASPVAAAAGEQTRIGEGP
SPALVELSSKVSGGQIQEGAEETLGKRPRQASAEEAEVARARRVDLRKRG
RGGGIQVVPSSAMASAPAPVEVERESGPSASAPPHPDTPPSKATPITEAA
PPGGSTNDAPSSKRRRSVRWRDEHGDGQLREVFVFEKEAGEEDAPASASG
GRSWTELAKREHLNERAALQKTGGMSGKGDDGSLKKEGLDAPRKSSDSPS
RTVPWHLPPRLAVSDPPPELESTEVFDETARTRVLIERQYLHEDEIPYTP
HEDKSAVARASPGAPPAPILEVIPWAGGAVEEKRQKLAAPAPPAQSSLPA
FSLPPPVVHQGPHQAPPSHGLLSAAPKSSASLLDNLLQGVRQGATPDVLG
AFLSQPPSSATPGPLPHWTQQQPQPQRLPPPLAPAGYQQPSHQGQPSAQL
LASLLLGSAQGGGWAPPSRSANATSLLGPSSYEPTIPQGHNYEQGQDQNH
RP

mRNA from alignment at CM002460.1:386502..389612-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2971 ID=rna2971|Name=rna2971|organism=Nannochloropsis gaditana|type=mRNA|length=3111bp|location=Sequence derived from alignment at CM002460.1:386502..389612- (Nannochloropsis gaditana)
GCAGATTGTTGTACCCACCATGTCGTTCTTTGCAACCTGATAACACCATG
TGAGGGGAGTCAGATTAAGGTGTGGTCGAAGACTTGCTCCCCACCACGTA
GCAGCTCTATTTTCCAGGAGACAACACAGCTCGATAGACCCTCCTGCACG
TTCTAATGCGCGGGGTCTACTTGATCCTCTCTCCCCCTTCCTCGCTAACC
CGGCGGCGACGGGGGCACATCACAGCCCTAAATACCACCGAGACAGCTGC
GATAGCTCTCCATAAGTCACACTTACTGTTGACGCGCCGGACAGGTGCAT
GTTTTCCCCACATGATACAGGGCTGGCGTGACTGGAAGACGATCGGTATC
TGGGGATTAAACGACGAACCAACCTGCCACCCTGGTACCGCGTAGATAAC
CCAGGCGGCGCTATAGAGGAACGAAGCCATCTGAAGGCACATATACTGGA
TTGTACCACCGGAAAATAATGATAGAGCATCTTAAACTTGTACAGAGTCA
CTTCAAGATGTTTCAGGCACAAACGGTGGCTTATCATGGACTCTTGGACA
TGCAAAGCTTCTTGCAGAACAAGCACCAGCAGGGAACATGCGGTCGTTCG
CCTTTGAGTACAGAATATAAGCTACGCCTTCTAGAGTTTGAGCTAGCTGA
GCGAGAAGATACATTGCGAAAAGACACTTTCAAAACAAATTTGCTTTCAT
GCGTTGACAAGGATGGATGTCTGATGGACTTGGCAACAGTAGTTCAGCCG
TACCTACAACTTCTGATCAAGTCAGTGTCCCGTCGGTGTTGGAGAGAGCA
GGCCTTGCTGGTCTTGATCTTACGGCGTACAGGTCTTGCTTTGAAGAAGA
GACGGAAGTACTCCTTGGTTCTGGAAAAGTTGGTTCGCTGGGGAGGCCTC
GAAGTTCTCAAAGCCGTCGTGAACGGATGCCTCCAGCACCAGCAGCACTC
TCAGGAGCGAGCGAACAGGAATGCGCCGTTGGGAGATCCAGGAACGCTAT
CTAAAGAAGTAGTTGAAAGAGCGGTGTCAGAGCTATTGGTTGCCACCTTA
AAAGCACTAGTCCTCCTTCCCGTCGACATCGAGGCTGTGAAAGACTCCAA
CATGGCGCGTTTCCTGTCGACAGTCTCGCAAGCCTTTGCGGCTGCGCCCG
ACTCATCGGAAACCTGCAAGGAGATTCACCATCATAATGTTGTTGTACCT
CGCTTGGTCCAGATAGTGACCAACAAATGGGCGGAGTTCTCTCGAAGTAC
CACCCAGAGGCGACGCGAAGTCAAGACCCTCACCACCGCAGCAGCACGCC
CCCCCCCAACATTAGCATCACCTGTAGCAGCGGCTGCGGGAGAGCAAACA
AGGATCGGAGAAGGGCCATCTCCAGCCTTGGTTGAGTTGAGTAGCAAAGT
GTCGGGCGGGCAGATTCAAGAAGGCGCCGAGGAGACGCTCGGGAAGCGGC
CACGCCAAGCATCGGCGGAGGAAGCGGAGGTGGCCCGGGCGCGGCGCGTG
GATCTGCGCAAAAGGGGTCGAGGTGGTGGAATACAAGTTGTCCCTTCAAG
CGCGATGGCAAGTGCGCCGGCGCCAGTTGAGGTGGAGCGTGAGAGCGGGC
CTTCTGCGTCGGCTCCACCCCACCCCGACACCCCGCCCAGTAAAGCCACA
CCTATCACAGAAGCTGCACCTCCGGGGGGGTCCACGAACGACGCTCCATC
CAGTAAGCGCAGGAGAAGCGTGCGGTGGAGGGACGAGCACGGTGATGGGC
AGCTTCGAGAAGTGTTCGTGTTCGAGAAAGAGGCTGGTGAGGAGGACGCC
CCGGCCTCCGCCTCCGGAGGAAGGTCTTGGACCGAGCTAGCCAAGCGAGA
GCACCTGAACGAGCGAGCTGCCTTGCAGAAGACGGGTGGCATGTCGGGAA
AGGGGGACGATGGGAGTCTCAAAAAGGAGGGACTGGATGCCCCTCGGAAA
AGCAGCGATTCTCCATCAAGAACAGTACCCTGGCACCTCCCCCCCCGACT
GGCCGTTTCGGATCCCCCCCCTGAGCTTGAATCCACGGAAGTCTTCGACG
AAACGGCGAGAACTCGGGTCTTAATCGAGCGGCAGTATCTACACGAAGAC
GAAATTCCCTACACACCGCACGAGGACAAGTCCGCTGTTGCCAGGGCCTC
GCCAGGCGCGCCACCCGCGCCCATCCTCGAGGTGATCCCGTGGGCCGGCG
GGGCAGTGGAGGAAAAGAGGCAAAAGCTGGCTGCACCAGCTCCTCCGGCA
CAAAGTTCGCTGCCGGCATTCTCGCTTCCGCCTCCTGTGGTGCACCAAGG
GCCGCATCAGGCGCCTCCCTCGCACGGCCTTCTGTCGGCGGCCCCGAAGT
CGAGTGCGAGCCTGCTTGACAACCTCCTTCAGGGCGTTCGCCAGGGAGCC
ACCCCCGACGTCCTAGGTGCCTTCCTGTCCCAACCGCCATCGTCAGCCAC
ACCGGGGCCCCTACCACACTGGACACAGCAGCAACCACAACCCCAACGCC
TGCCGCCTCCGCTCGCACCGGCGGGATACCAGCAACCAAGTCACCAGGGT
CAGCCCTCGGCCCAGCTCTTGGCGAGCCTCCTATTGGGCAGTGCACAGGG
CGGGGGTTGGGCACCGCCATCGCGTTCAGCCAATGCAACATCGCTCTTGG
GCCCTTCTTCATACGAGCCCACCATTCCGCAGGGCCACAATTACGAACAG
GGGCAAGACCAGAACCATAGGCCATAATAGAAGGATCAGGTACGTTTGAA
CGGAGAAAGAAAATAAAAATGAGTGCGAAACTGCTTGCTTTTGTTGTTTT
GGATGCATTTTTTACGTAAACATCTTTCATCAGATTTTTCAAGGATTGGC
AAGCCTAGTTCAATCCCTCTACATGAGTGAGCGTGTGGATGCGGTACTTC
TCTGCTGTCTCCTCGCGGCACTCGGGCTCGGTTTGCATTCCGGCTTCTTC
CCTTTCTTCCCTCTTTATCGCTAGCATAAGGTCTGCTCTCAAATCATTAC
AAGCTATCATTCTAGACAATCAATCCGAATGCCTTACAAGCCATTGGAAA
TTTACATAAAACGCCGATTCTACGATTAAGATTAAAATTAAAAAAAGGGC
GTCAATTCACC

Coding sequence (CDS) from alignment at CM002460.1:386502..389612-

>rna2971 ID=rna2971|Name=rna2971|organism=Nannochloropsis gaditana|type=CDS|length=2259bp|location=Sequence derived from alignment at CM002460.1:386502..389612- (Nannochloropsis gaditana)
ATGATAGAGCATCTTAAACTTGTACAGAGTCACTTCAAGATGTTTCAGGC
ACAAACGGTGGCTTATCATGGACTCTTGGACATGCAAAGCTTCTTGCAGA
ACAAGCACCAGCAGGGAACATGCGGTCGTTCGCCTTTGAGTACAGAATAT
AAGCTACGCCTTCTAGAGTTTGAGCTAGCTGAGCGAGAAGATACATTGCG
AAAAGACACTTTCAAAACAAATTTGCTTTCATGCGTTGACAAGGATGGAT
GTCTGATGGACTTGGCAACAGTAGTTCAGCCGTACCTACAACTTCTGATC
AAGTCAGTGTCCCGTCGGTGTTGGAGAGAGCAGGCCTTGCTGGTCTTGAT
CTTACGGCGTACAGGTCTTGCTTTGAAGAAGAGACGGAAGTACTCCTTGG
TTCTGGAAAAGTTGGTTCGCTGGGGAGGCCTCGAAGTTCTCAAAGCCGTC
GTGAACGGATGCCTCCAGCACCAGCAGCACTCTCAGGAGCGAGCGAACAG
GAATGCGCCGTTGGGAGATCCAGGAACGCTATCTAAAGAAGTAGTTGAAA
GAGCGGTGTCAGAGCTATTGGTTGCCACCTTAAAAGCACTAGTCCTCCTT
CCCGTCGACATCGAGGCTGTGAAAGACTCCAACATGGCGCGTTTCCTGTC
GACAGTCTCGCAAGCCTTTGCGGCTGCGCCCGACTCATCGGAAACCTGCA
AGGAGATTCACCATCATAATGTTGTTGTACCTCGCTTGGTCCAGATAGTG
ACCAACAAATGGGCGGAGTTCTCTCGAAGTACCACCCAGAGGCGACGCGA
AGTCAAGACCCTCACCACCGCAGCAGCACGCCCCCCCCCAACATTAGCAT
CACCTGTAGCAGCGGCTGCGGGAGAGCAAACAAGGATCGGAGAAGGGCCA
TCTCCAGCCTTGGTTGAGTTGAGTAGCAAAGTGTCGGGCGGGCAGATTCA
AGAAGGCGCCGAGGAGACGCTCGGGAAGCGGCCACGCCAAGCATCGGCGG
AGGAAGCGGAGGTGGCCCGGGCGCGGCGCGTGGATCTGCGCAAAAGGGGT
CGAGGTGGTGGAATACAAGTTGTCCCTTCAAGCGCGATGGCAAGTGCGCC
GGCGCCAGTTGAGGTGGAGCGTGAGAGCGGGCCTTCTGCGTCGGCTCCAC
CCCACCCCGACACCCCGCCCAGTAAAGCCACACCTATCACAGAAGCTGCA
CCTCCGGGGGGGTCCACGAACGACGCTCCATCCAGTAAGCGCAGGAGAAG
CGTGCGGTGGAGGGACGAGCACGGTGATGGGCAGCTTCGAGAAGTGTTCG
TGTTCGAGAAAGAGGCTGGTGAGGAGGACGCCCCGGCCTCCGCCTCCGGA
GGAAGGTCTTGGACCGAGCTAGCCAAGCGAGAGCACCTGAACGAGCGAGC
TGCCTTGCAGAAGACGGGTGGCATGTCGGGAAAGGGGGACGATGGGAGTC
TCAAAAAGGAGGGACTGGATGCCCCTCGGAAAAGCAGCGATTCTCCATCA
AGAACAGTACCCTGGCACCTCCCCCCCCGACTGGCCGTTTCGGATCCCCC
CCCTGAGCTTGAATCCACGGAAGTCTTCGACGAAACGGCGAGAACTCGGG
TCTTAATCGAGCGGCAGTATCTACACGAAGACGAAATTCCCTACACACCG
CACGAGGACAAGTCCGCTGTTGCCAGGGCCTCGCCAGGCGCGCCACCCGC
GCCCATCCTCGAGGTGATCCCGTGGGCCGGCGGGGCAGTGGAGGAAAAGA
GGCAAAAGCTGGCTGCACCAGCTCCTCCGGCACAAAGTTCGCTGCCGGCA
TTCTCGCTTCCGCCTCCTGTGGTGCACCAAGGGCCGCATCAGGCGCCTCC
CTCGCACGGCCTTCTGTCGGCGGCCCCGAAGTCGAGTGCGAGCCTGCTTG
ACAACCTCCTTCAGGGCGTTCGCCAGGGAGCCACCCCCGACGTCCTAGGT
GCCTTCCTGTCCCAACCGCCATCGTCAGCCACACCGGGGCCCCTACCACA
CTGGACACAGCAGCAACCACAACCCCAACGCCTGCCGCCTCCGCTCGCAC
CGGCGGGATACCAGCAACCAAGTCACCAGGGTCAGCCCTCGGCCCAGCTC
TTGGCGAGCCTCCTATTGGGCAGTGCACAGGGCGGGGGTTGGGCACCGCC
ATCGCGTTCAGCCAATGCAACATCGCTCTTGGGCCCTTCTTCATACGAGC
CCACCATTCCGCAGGGCCACAATTACGAACAGGGGCAAGACCAGAACCAT
AGGCCATAA

Synonyms

Publications