rna2969, rna2969 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2969
Unique Name	rna2969
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2799
Alignment location	CM002460.1:383645..384463 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100034g10.6299.mrna
Orig protein id	gnl\|cribi\|Naga_100034g10.6299
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:383645..384463 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g10	gene2849	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27726.1	cds2961	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2969	rna2969-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:383645..384463-
coding sequence from alignment at CM002460.1:383645..384463-

mRNA sequence

>rna2969 ID=rna2969|Name=rna2969|organism=Nannochloropsis gaditana|type=mRNA|length=2799bp
ATGCCAAATCCTGACGGCGATGGTGATGGAAAGAATTCATCCAAGGATGA
CAAGCGGCAGGCGGTGGCTTTGATGGTGCCGGCAGCAGATCCGCCTACGT
TGGAGAAGGAAGAGCGGGGCGTGCCTCCGAAACCTGAACCTGACGACAAG
GACAAAAAGGACAAAAGCAAGGAAGCAGACGAAATATCGGCAGAAGATCA
GGCGCTACTGGAGGGCTTACAGCTGGCGGTAGAGCGGGCGCAGGACAAGG
ACGCTGGTGTCCAGAAAATGGCTTTGGAGCATTTGCGTAAGGAGATCCGC
GCCGCGACCTCCTCCATGACCTCCGTCCCCAAGCCGCTCAAGTTTTTGCG
CCCACATTACACTACGCTTATCGATGTGTATACTAACGCAGCTATTTATC
CCGTGGGGTCAGAAAACCGCAAACTTTTGGGGGACGTGCTGGCGGTACTA
GCCATGACGATGGCGACACCGGGGTCTCGAGAGAGCTTGCGTTTCAAGCT
CGAGAGCAACGCCCAGGACCTGGGTTCCTGGGGCCACGAGTTTGTGCGCT
CTCTGGCGGGAGAGATCGGGGAGGAGTATGTATCGCGCACGACGGCGGAC
GCCCCGCAGCCCGTGGAGGACCTGCTGGCCCTGGTCAAGGATATAGTCCC
CTTCCACATCCAACACAACGCTTTCGCCGAGGCCGTCGACCTCCTCCTCG
AGGTGCAGCGACTGCCCCAGCTTCTGGAACTCACCTCTGTGGACGAGGCC
AACTACCAGCGCATCTGCCTGTACCTGTTGCGGTGCGCAGATTTCATGGC
GGACCCGGACGACCTGCAGGAGATGCTCGTCACGGCCTACGAGCTCTACA
GGAAACAGGGGTCCTATGCCGACGCGCTTCGGGTTGCCATTAAGCTCAAC
AATGATATGGCCCGCATTCACCAGCTCTTTGAAGAGGTGAGCGACGAGAC
TCAGAAGAGGCAGCTGGCCTTCATGGTAGGCCGCAGCCACGTGAATTTGC
AGTACGAGGGAGAGGAAGCGGATGCAGAGGAAGTGAACGAGCTGGTGGGG
AACTCGAAGCTGAGCGAGCACTACTTGTTGCTGGCCAAGGACTTGGATGT
GCTCGACCCGAAGACGCCGGAGGACATCTTTAAGAGCCACCTGGCGGAGA
CGGGCGGTTTCAGCAGAAGACGGGAGGGCGCGGGTGCCCATCATGTGGAC
TCGGCGCGGGCCAACCTGGCCTCTACCTTCGTGAACGCCTTTGTGAACCT
CGGATATCAGAAAGATGCGCTGGTGACACCCGAGGGAAACGCGTGGCTCT
ACAAAAACAAAGACCACGGGATGATGAGCGCAGCAGCATCCATCGGTGCG
ATATTGCTGTGGAATGTAGAGGAGGGCCTCAATCAAATTGACAAGTTTAT
GCACAGCCAGGAAGAGCATATCAGGGCAGGAGCTCTGCTGGCCATTGGCA
TCGTCTCTTCGGGCGTGCGCATCGAGCATGATGCAGCGCTGGCCCTCCTT
TCCGAGCACTTGGAGAGCGCCTCCAAGCCAGTCCGATACGCGGCGGCTTT
CGGGCTGGGCCTTGCCTACGCGGGAAGTAACCGGGAGGACTTGATAGAGC
TGCTGGCACCACTGGTGGCAGATGCTGACGCCGGTATCACCGAGGTCGCT
CTGGCAGCGCTCTCGCTGGGCATGATTTTCGTGGGGACGACGAACTCGGA
GGTGGCGTCCCTCTTAGTGCAGCGCCTGATGGAAAGCGCGGAGGCGGATC
TGGACAACCCGATGGCCCGCTTTCTGGTGCTAGGCCTTGCGCTCCCCTTC
CTTGGGCAGATGGAAAAGGCGGACGCGATGCTAGAGGCGGTCAAGACGGT
GGAGCACAAGATGGGCCGGTCAGCGGCGGTCGTGCTGGAGACGGCCGCCT
ACGCGGGGAGTGGGAACGTGCTAAAAGTCCAGAAGATGCTGCATTTGTGC
GCAGAGCACCTGCAAGAGGACGCTGACCACCAGAGTGTTGCCGTGCTGGG
CATTGCTCTCATCACACTGGGCGAGGAGGTGGGCGCGGAGATGGCTCTGC
GCTCCTTCGATCACCTCCTACATTACGGCGAGCTGCCCATCCGCCGGGCC
GTTCCCCTGGCGTTCGCGCTTCTCCACGTGTCCAACCCGGATTACGGGAT
CATCGACCAGCTCTCCCGCCTCACGCACGATCAGGATGGCCAGGTGGCCC
AGAACGCGGTCCTGGCTCTGGGCGTGATCGGCTGCGGCACCAACAACTCT
CGCATCGCAGGCCTCCTGCGCCAGTTGGCCGAGTTCTACAGCCGAGAAGC
CTCCCACCTCTTTGTCGTCCGCGTCGCGCAGGGCTTCCTCCACGCGGGCA
AGGGCCTGGTCAGCATGACCCCCTTCCACTCCGACCGCCTCCTCGCCTCG
GGGGTGGGTCTGGCCGGCATCCTCACCCTCCTGCACGCCGCCCTCGACAT
GAAGAACACCGTCCTGGACAAGCATCACTACCTCCTCTTCAGCGCTCTTG
TTGCCATGAACCCCCGGATGCTCATCACCCTCGATGAGGACTTGAACCCG
CTGCCGGTCACGGTGCGCGTCGGCCAGGCGGTGGAGACTGTGGGCCAAGC
CGGACGGCCCAAGACCATCACGGGCTTCCAGACGCACACCACGCCTGTCC
TCCTCGGTGTGAAGGATCGCGCCGAGCTTGCTTCATCGGAGTATCTGGCC
TACACGATCCAAGCTGCCGAGTGTGGGGGAGGTTTGATATGCATGATTTG
TGACCCGGCTTTTCTCCAATTTCCTACTTTTAGAGGAGTGCAGGCCTAG

protein sequence of rna2969

>rna2969-protein ID=rna2969-protein|Name=rna2969|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MSIQEDVGDYQGRKEDENELDFDDDEDLPPFPPPPPVEQAHSPPPDGRTH
EVKRKGLEEKGTGSLKALEKHSRVNKQAPRSASRTLDPLYCSYQDYLQAL
RQAGEMQRRDERRRP

mRNA from alignment at CM002460.1:383645..384463-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2969 ID=rna2969|Name=rna2969|organism=Nannochloropsis gaditana|type=mRNA|length=819bp|location=Sequence derived from alignment at CM002460.1:383645..384463- (Nannochloropsis gaditana)
CATGAGTGAAAATGTTGCCAAGCTTCAGGAGTAGGACGTCAAGATCTGTC
GAAAAATGATCGCGGAATGGGGGGAGTGCAAAATGCGCACTGTTCTGGAT
GATCTAGCCTACTTTTTTCGCTTGTCTCAACAACTCCTCGCTACATTTAC
CTTTTTTTTTGAAAATGCTGGTCGCACAGTTGTATATGGTTCTTTCCGGC
CTAAGCTCCGCCAGGCAGCACACAAACAGCACCATCAAACCCTTCTCCTC
CAGTAGCGAACAGCCTTGCCTACAGGTCTTATGAGCATTCAGGAGGACGT
TGGTGATTACCAGGGCCGCAAGGAGGATGAAAATGAATTGGACTTTGACG
ATGACGAGGACTTGCCTCCCTTTCCGCCGCCTCCCCCGGTCGAGCAAGCG
CATTCTCCCCCTCCGGATGGCCGAACTCACGAGGTCAAGAGGAAGGGCCT
GGAGGAGAAGGGGACCGGCAGCCTGAAGGCGCTCGAGAAGCACAGCCGTG
TCAATAAACAGGCTCCACGCAGTGCATCACGGACGCTTGATCCTCTTTAT
TGCTCGTATCAGGACTATTTGCAGGCTCTGCGACAGGCAGGTGAAATGCA
ACGACGAGATGAGCGCAGGCGCCCCTGAAGTCTGAAAAATAAGAATGGTA
ACATCACTGCTTTTTGGCCTGCTTTCCAACAGTGGACTGGCCGGCCACGT
GCATACCTCCTTTCTTCTTTATTTTCCTTAGGACTTTCTTAGAATCGCAC
AATAGATATTTTTTTTCTCTAGGCCTGCACTCCTCTAAAAGTAGGAAATT
GGAGAAAAGCCGGGTCACA

Coding sequence (CDS) from alignment at CM002460.1:383645..384463-

>rna2969 ID=rna2969|Name=rna2969|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at CM002460.1:383645..384463- (Nannochloropsis gaditana)
ATGAGCATTCAGGAGGACGTTGGTGATTACCAGGGCCGCAAGGAGGATGA
AAATGAATTGGACTTTGACGATGACGAGGACTTGCCTCCCTTTCCGCCGC
CTCCCCCGGTCGAGCAAGCGCATTCTCCCCCTCCGGATGGCCGAACTCAC
GAGGTCAAGAGGAAGGGCCTGGAGGAGAAGGGGACCGGCAGCCTGAAGGC
GCTCGAGAAGCACAGCCGTGTCAATAAACAGGCTCCACGCAGTGCATCAC
GGACGCTTGATCCTCTTTATTGCTCGTATCAGGACTATTTGCAGGCTCTG
CGACAGGCAGGTGAAATGCAACGACGAGATGAGCGCAGGCGCCCCTGA

Synonyms

Publications