rna2965, rna2965 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2965
Unique Name	rna2965
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	597
Alignment location	CM002460.1:370304..373932 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100034g14.6324.mrna
Orig protein id	gnl\|cribi\|Naga_100034g14.6324
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:370304..373932 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g14	gene2845	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27751.1	cds2957	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2965	rna2965-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:370304..373932-
coding sequence from alignment at CM002460.1:370304..373932-

mRNA sequence

>rna2965 ID=rna2965|Name=rna2965|organism=Nannochloropsis gaditana|type=mRNA|length=597bp
ATGGACATGCGAGCGGAGGATCAGCAACAGATGCAAGATGGAATAGCCAA
ACTGAACGCCATGCCTGTAGCCGACTTGCGCACCGAGTTACTGCGGATAT
GTGGCTCAGTATCTTGGGTGGAGTCAGTCATCAAAACCTTCCCTCACACC
TCGGCTGCCTCGATCCTGACAGCAATGGATAGGGCGTGGTGGTCTCTGTC
GAGACCCGATTACCTCGAGGCTTTTGCAGCCCATCCTCGTATCGGAGATG
GGGAGGCTTTAAAAAAGAAATTTGCCACCGTACCCAAGGCCAGTGGCAAG
GCGGGACCGGTTTGGGAGGCAGACGAACAAAAAGGAGCAGAAGGGGCCAA
TGAAAAGACGCTTCAAAGCTTGGTTGTGCATAACAGATTGTACGAAGAGC
GATTTGGGCACATCTTTCTTGTCTGTGCCACTGGCAAAACGGCTGACGAG
ATGCTTGCAATACTGCAAGATCGCATGCGCAACGAGCCAGCCTACGAGCT
GATCATGGCGGCGGGAGAGCAGAATAAAATTACAGCACTGCGGCTTCACA
AACTTTTGACCTTTCTGGGGACACGAGAAGATTCAAGTCGGTTGTAA

protein sequence of rna2965

>rna2965-protein ID=rna2965-protein|Name=rna2965|organism=Nannochloropsis gaditana|type=polypeptide|length=816bp
MAQDEHNAQDGNDNDNHDPVGHGHAHRERGHPRAEARVPANANQNREREE
PAEFPQQHGAQAPRGVIVNNLNNDENAGGAGIDADMDVELHVAVDELMGV
RGPFVYLVRNILWLVAFNGAYLGLFAFIPYSVGAAVVGAAEKYVETPLGI
CTLRFLVPRSICKLAAEVCQAAAAEEHTLQLPDLGVILLGYLLMSAMVFT
WRTIVCAVCKRMAVTALPMLGKVVRMLECTAAVVKVGVLLFSKMALCPLL
LGLWLDAATTQVIGPDHAVRVRFATENLVGALLLHWVAGITFMLFVTVSV
LQLREVLHPDILARIIRPQEPQPDLLGSLLQESGLTHARRMAISLGIYVL
LLLLFVYLPAELLAFAGFNATGNGLFHLNFFYLAPQLQIPFELIIFHLAM
LAFLEHTKNAIGRLQYMWLRPFCKALGLTRYLLPLTRLHPPEQPAGVPMR
DMEFLVGPPVPRPPMDWEEEAGRDDARWAWGNDPMSEVERNVAPRSRPSW
CGVRLFVLVVASWAAILALVSTALLTPLVLGRLIFTLLRVPSRFYHDPLA
FAAGLALCWVAHKCLVRLHQRIEVADVRAWVARTSCPTSFRAVVAVSAFA
AMWFGVAPLLLGLLYDAAVALPPNSWAEEGFGSLQLWADWALGLALLHQW
AYLAATGMVDGAWFPRIGRAAEQGVEGGRGFGFNQQAVVVTAEALQAVFR
SWSWEDATLNKLLAPFVWPVTAQLLELVVVPANAAFALAYMRDRVPDLPY
LAGLPSPEAMTSPELQLLCFRMTVVAWILAMFSIKCVAPLHRWVSSIQAA
VRDEKYLVRLELVNYA

mRNA from alignment at CM002460.1:370304..373932-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2965 ID=rna2965|Name=rna2965|organism=Nannochloropsis gaditana|type=mRNA|length=3629bp|location=Sequence derived from alignment at CM002460.1:370304..373932- (Nannochloropsis gaditana)
CAAGCGTAGTAGTACGAGACGCGATCCAGTTTCGGTCCTAGGAGAGCGCT
TCGGCAGCCCGATCGCAGTCGTTTCCCCTCGACCTACCCTCCTAGTCGGC
CCCCTTGACCTCGAAAAGGGCGCTGGTGCTCAGGAAGGGATGGCACAGAC
ACCAGCCGACCACACACATGGAGCAGTATCGATGAAAGGGATGCAGGATG
GTGGTGATTCATCGATAGCTCCATCAACCAATGTCTTTGGAGGCTCGCAA
CAGCCCGTACTAGACGAGGACCACGACGAAGAGGAGTGCCGCGTTTGCCG
GGAGAGCAATGGAATTTTGTTCCGTCCCTGTAAGTGCGCGGGTAGTATCC
GCTCCACACATCAAGAGTGTCTTCTTCAGTGGCTCCAACATAGCGGAAAG
GACAGCTGCGAGCTCTGTAAGCACAAGTTCCATTTTCAGCCGGTTTACGC
CGATGACGCGCCCACCCATATTCCTGCGCGGCAAGTGTTGGGCCGATGCT
TGCGCAAAGCCGTCTGTGATTATCTTCCCTTTGTGGTACGACTCGTCATT
GTAGCAGTGCTGTGGTTGGGTGTTGTGCCCTGCACTACAAGCTGGATCTA
CCGCATCTGGATACACCGCGCCAGCTTGCTGGTCCCAGACCTCATTCGGC
GCCGTTTGCATGGGGAGGGGAGCGGTATGCTTTGGAATGACGCGGTCTCT
GGAATAATTATTGTCGGTTTCATAATATTCTCTTTTTTAAGTCTCATGTC
TTTCGCAGACTTTTTGCGGTTTCACTGGGAGGTGAGGGATGTCAATGGGG
GGGGGGGGCTGAGGAGGAGATGGCGCAAGACGAGCACAACGCGCAAGACG
GAAACGACAACGACAATCACGACCCTGTCGGACACGGACACGCCCATAGA
GAGCGGGGGCATCCAAGAGCCGAAGCACGCGTTCCTGCCAATGCCAACCA
GAACCGCGAACGAGAAGAACCGGCAGAGTTCCCGCAGCAGCATGGGGCCC
AGGCGCCGAGGGGAGTAATCGTTAACAATCTGAACAACGATGAGAATGCT
GGAGGCGCAGGTATTGATGCGGACATGGATGTGGAGTTGCATGTGGCTGT
TGATGAATTGATGGGAGTCCGCGGGCCGTTTGTGTACTTGGTGAGAAATA
TCCTGTGGCTGGTGGCCTTCAACGGGGCCTACCTGGGGCTCTTCGCCTTC
ATTCCCTACAGCGTTGGCGCAGCAGTTGTAGGAGCAGCGGAAAAGTATGT
AGAAACGCCTCTTGGAATATGTACGTTGCGTTTTCTGGTGCCCCGCTCCA
TCTGCAAGCTGGCCGCCGAGGTCTGCCAGGCAGCGGCGGCCGAGGAACAC
ACCTTGCAGCTGCCGGATCTGGGCGTCATCTTGCTCGGTTACCTGCTCAT
GTCTGCCATGGTGTTCACCTGGCGCACTATCGTCTGTGCTGTTTGCAAGC
GTATGGCCGTCACGGCGCTGCCCATGCTGGGGAAGGTAGTGCGTATGCTT
GAGTGCACGGCGGCAGTTGTCAAGGTAGGAGTCCTCCTCTTCAGCAAAAT
GGCCCTCTGTCCCTTGCTTTTGGGACTCTGGTTAGATGCAGCCACAACCC
AGGTGATAGGACCGGATCACGCGGTGCGCGTGCGCTTCGCCACAGAAAAT
CTGGTGGGTGCACTTCTTTTGCACTGGGTAGCCGGTATCACTTTCATGCT
CTTTGTCACAGTCTCAGTTCTGCAGCTGCGTGAGGTCCTGCACCCGGATA
TTCTGGCAAGGATCATCCGACCTCAGGAGCCCCAACCAGACCTCCTCGGC
AGTCTCCTGCAAGAGTCAGGTCTCACGCATGCTCGTCGCATGGCAATTTC
TCTCGGAATCTACGTTCTTTTGCTTCTTCTTTTCGTATATTTGCCAGCGG
AGCTTTTGGCTTTTGCTGGTTTCAATGCGACCGGTAATGGGCTTTTCCAC
CTCAATTTTTTCTACCTGGCACCTCAGCTGCAAATACCTTTTGAGCTCAT
CATCTTCCATCTGGCCATGCTCGCCTTCCTTGAGCATACGAAGAACGCGA
TCGGGCGCCTGCAGTACATGTGGCTTCGTCCATTTTGTAAAGCCTTGGGG
CTGACGCGTTACCTGTTGCCTCTCACGCGGCTGCATCCTCCGGAACAGCC
GGCGGGAGTTCCCATGCGCGATATGGAATTTCTTGTGGGTCCCCCGGTGC
CGCGACCGCCCATGGACTGGGAGGAAGAGGCGGGACGGGACGACGCGCGG
TGGGCTTGGGGCAATGATCCCATGTCGGAAGTCGAGCGCAACGTGGCGCC
GCGTTCTCGGCCTTCCTGGTGCGGTGTGCGCTTGTTTGTCCTTGTAGTTG
CGTCATGGGCAGCGATTTTGGCTTTGGTTTCGACCGCATTATTGACGCCC
TTGGTGTTGGGACGTTTGATCTTTACGCTTCTTAGGGTGCCAAGCAGGTT
CTACCATGATCCCTTGGCATTCGCTGCAGGGCTAGCATTATGTTGGGTCG
CGCATAAGTGTCTGGTGCGGCTTCACCAGCGGATCGAGGTGGCCGACGTC
CGCGCGTGGGTGGCCCGGACTTCCTGTCCCACGTCTTTCCGGGCGGTTGT
GGCAGTGAGTGCCTTTGCAGCGATGTGGTTCGGTGTAGCGCCTTTGTTGC
TGGGATTGCTGTATGACGCGGCCGTGGCATTACCACCCAATTCCTGGGCC
GAAGAAGGGTTTGGAAGTCTCCAGCTGTGGGCAGACTGGGCGTTAGGACT
TGCACTTCTGCATCAATGGGCGTACCTGGCAGCGACGGGCATGGTAGACG
GGGCGTGGTTTCCGCGGATAGGTCGTGCTGCAGAACAAGGTGTTGAAGGG
GGAAGAGGCTTTGGATTTAATCAACAAGCGGTAGTCGTGACGGCGGAGGC
GCTGCAGGCTGTGTTCAGGTCATGGAGCTGGGAAGATGCAACGCTCAACA
AGTTACTGGCCCCTTTCGTATGGCCTGTCACGGCGCAACTGTTGGAATTG
GTTGTCGTTCCCGCGAACGCCGCTTTCGCTCTCGCCTACATGCGCGACCG
CGTGCCTGACTTGCCCTACCTCGCGGGTCTCCCGTCGCCGGAGGCCATGA
CAAGCCCGGAATTGCAGTTGCTTTGCTTCCGCATGACCGTGGTGGCCTGG
ATATTGGCCATGTTCTCCATCAAATGTGTAGCCCCGCTCCACCGCTGGGT
ATCGTCGATCCAAGCGGCAGTACGAGACGAAAAATATCTTGTGCGTCTGG
AGCTGGTCAATTACGCCTGAAAATGCGAGCTTTCCCTCGTATCTGCCTCA
CCTGCATAAAGGACGCATTTTGTTGCATACAGTCTCAAAGTGAGAGCTTT
AAAATGTGCCAGCAATCGCACCGTCTCCTGGAAAACTCTTGACGGGGATG
AAAGACGCCATTTTTCATAAAGAAATGAGTTTTGAGATTTAAAAAAATCT
GCGACTGTAAGGCCGAGTCTGTTGATATTTTAAGGCCGAGCAGGCAATCT
TGATGGCAGGATACAGTAACAAAAGAGGCTTTTCAAGTTGTGGACGGGCT
TGTACAAGTAACGACAACTTAAATATAAGTAGAGTGGCTTCGAACCTACA
CCATGATACGAAATCAGTCCAATCATCTC

Coding sequence (CDS) from alignment at CM002460.1:370304..373932-

>rna2965 ID=rna2965|Name=rna2965|organism=Nannochloropsis gaditana|type=CDS|length=2451bp|location=Sequence derived from alignment at CM002460.1:370304..373932- (Nannochloropsis gaditana)
ATGGCGCAAGACGAGCACAACGCGCAAGACGGAAACGACAACGACAATCA
CGACCCTGTCGGACACGGACACGCCCATAGAGAGCGGGGGCATCCAAGAG
CCGAAGCACGCGTTCCTGCCAATGCCAACCAGAACCGCGAACGAGAAGAA
CCGGCAGAGTTCCCGCAGCAGCATGGGGCCCAGGCGCCGAGGGGAGTAAT
CGTTAACAATCTGAACAACGATGAGAATGCTGGAGGCGCAGGTATTGATG
CGGACATGGATGTGGAGTTGCATGTGGCTGTTGATGAATTGATGGGAGTC
CGCGGGCCGTTTGTGTACTTGGTGAGAAATATCCTGTGGCTGGTGGCCTT
CAACGGGGCCTACCTGGGGCTCTTCGCCTTCATTCCCTACAGCGTTGGCG
CAGCAGTTGTAGGAGCAGCGGAAAAGTATGTAGAAACGCCTCTTGGAATA
TGTACGTTGCGTTTTCTGGTGCCCCGCTCCATCTGCAAGCTGGCCGCCGA
GGTCTGCCAGGCAGCGGCGGCCGAGGAACACACCTTGCAGCTGCCGGATC
TGGGCGTCATCTTGCTCGGTTACCTGCTCATGTCTGCCATGGTGTTCACC
TGGCGCACTATCGTCTGTGCTGTTTGCAAGCGTATGGCCGTCACGGCGCT
GCCCATGCTGGGGAAGGTAGTGCGTATGCTTGAGTGCACGGCGGCAGTTG
TCAAGGTAGGAGTCCTCCTCTTCAGCAAAATGGCCCTCTGTCCCTTGCTT
TTGGGACTCTGGTTAGATGCAGCCACAACCCAGGTGATAGGACCGGATCA
CGCGGTGCGCGTGCGCTTCGCCACAGAAAATCTGGTGGGTGCACTTCTTT
TGCACTGGGTAGCCGGTATCACTTTCATGCTCTTTGTCACAGTCTCAGTT
CTGCAGCTGCGTGAGGTCCTGCACCCGGATATTCTGGCAAGGATCATCCG
ACCTCAGGAGCCCCAACCAGACCTCCTCGGCAGTCTCCTGCAAGAGTCAG
GTCTCACGCATGCTCGTCGCATGGCAATTTCTCTCGGAATCTACGTTCTT
TTGCTTCTTCTTTTCGTATATTTGCCAGCGGAGCTTTTGGCTTTTGCTGG
TTTCAATGCGACCGGTAATGGGCTTTTCCACCTCAATTTTTTCTACCTGG
CACCTCAGCTGCAAATACCTTTTGAGCTCATCATCTTCCATCTGGCCATG
CTCGCCTTCCTTGAGCATACGAAGAACGCGATCGGGCGCCTGCAGTACAT
GTGGCTTCGTCCATTTTGTAAAGCCTTGGGGCTGACGCGTTACCTGTTGC
CTCTCACGCGGCTGCATCCTCCGGAACAGCCGGCGGGAGTTCCCATGCGC
GATATGGAATTTCTTGTGGGTCCCCCGGTGCCGCGACCGCCCATGGACTG
GGAGGAAGAGGCGGGACGGGACGACGCGCGGTGGGCTTGGGGCAATGATC
CCATGTCGGAAGTCGAGCGCAACGTGGCGCCGCGTTCTCGGCCTTCCTGG
TGCGGTGTGCGCTTGTTTGTCCTTGTAGTTGCGTCATGGGCAGCGATTTT
GGCTTTGGTTTCGACCGCATTATTGACGCCCTTGGTGTTGGGACGTTTGA
TCTTTACGCTTCTTAGGGTGCCAAGCAGGTTCTACCATGATCCCTTGGCA
TTCGCTGCAGGGCTAGCATTATGTTGGGTCGCGCATAAGTGTCTGGTGCG
GCTTCACCAGCGGATCGAGGTGGCCGACGTCCGCGCGTGGGTGGCCCGGA
CTTCCTGTCCCACGTCTTTCCGGGCGGTTGTGGCAGTGAGTGCCTTTGCA
GCGATGTGGTTCGGTGTAGCGCCTTTGTTGCTGGGATTGCTGTATGACGC
GGCCGTGGCATTACCACCCAATTCCTGGGCCGAAGAAGGGTTTGGAAGTC
TCCAGCTGTGGGCAGACTGGGCGTTAGGACTTGCACTTCTGCATCAATGG
GCGTACCTGGCAGCGACGGGCATGGTAGACGGGGCGTGGTTTCCGCGGAT
AGGTCGTGCTGCAGAACAAGGTGTTGAAGGGGGAAGAGGCTTTGGATTTA
ATCAACAAGCGGTAGTCGTGACGGCGGAGGCGCTGCAGGCTGTGTTCAGG
TCATGGAGCTGGGAAGATGCAACGCTCAACAAGTTACTGGCCCCTTTCGT
ATGGCCTGTCACGGCGCAACTGTTGGAATTGGTTGTCGTTCCCGCGAACG
CCGCTTTCGCTCTCGCCTACATGCGCGACCGCGTGCCTGACTTGCCCTAC
CTCGCGGGTCTCCCGTCGCCGGAGGCCATGACAAGCCCGGAATTGCAGTT
GCTTTGCTTCCGCATGACCGTGGTGGCCTGGATATTGGCCATGTTCTCCA
TCAAATGTGTAGCCCCGCTCCACCGCTGGGTATCGTCGATCCAAGCGGCA
GTACGAGACGAAAAATATCTTGTGCGTCTGGAGCTGGTCAATTACGCCTG
A

Synonyms

Publications