rna2952, rna2952 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2952
Unique Name	rna2952
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1017
Alignment location	CM002460.1:340255..343183 +

Link to JBrowse

Properties


Property Name	Value
Product	component of oligomeric golgi complex 2
Orig transcript id	gnl\|cribi\|Naga_100034g28.6311.mrna
Orig protein id	gnl\|cribi\|Naga_100034g28.6311
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:340255..343183 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g28	gene2832	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2952	rna2952-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27738.1	cds2944	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:340255..343183+
coding sequence from alignment at CM002460.1:340255..343183+

mRNA sequence

>rna2952 ID=rna2952|Name=rna2952|organism=Nannochloropsis gaditana|type=mRNA|length=1017bp
ATGGGCAATAAAGCTCTGGGGGCGAGAAAGAGACAGCTTGGAGCCGTAAA
TCATATTAATGCATGCTCTTTAGGGTGGCTGATGTGCATTTTCCAGGTCA
CTTTTCGAGCTATCCATTTCCTGGATGGAAAAGTTCGTGATGTTCATAGT
CGCAAGCACACTATTTGTACAGAACGGAACATAGGACGTAAATCATTGGT
TCGTACAAGCGCTCAATTCGAATCTCCTATTTCTCCAGATCTGGTAACAA
GAGCTGAGATGAAGGGTATCTCATCAGCATTCACGACATCCATTGTTATC
GGGTGTAATCGTGGCATCGGGCTTGAGCTTTGCAAGCAGCTTCACATCCG
AGGAGATCGCGTAGTTGGAGTTTGCAGGAAAGCATCTGATGAGCTAAAAG
CCCTAGGACTGTGGAAAGTGATGGAGAACATGGACATTACAGTCGAAGAG
GACACGCGCCGTCTGGGCGCAGATAACTTGGGCACGGTGGACAATCTGTG
GCTTAATGCCGGAATCGGTGATGGCATTGAAGACAGTTTAGTGGAAGGTC
TGAATTACGGTCAGATTCTCCGATCTTTCGAGACAAACGCAGTCGGCCCA
CTTCGTTGCGTACAATCCTTCCTTCCTAGTCTAAAACGAGGTAGTAAGGT
ATTACTTGTGACAAGCCGCATGGGCTCGGTCGAAGATAATACGTCTGGGG
GATCCTACGGCTATAGGATGAGCAAAGCAGCTTTAAATATAGTGGGTAAA
AGCTTGTCATTGGACCTGCTGCATAAAGGCATCGCCGTACTGGTTTTGCA
TCCCGGATTTGTGAAAACCGATATGACGAAACTGTATTGGGGCGAAAAAG
GCATCATTTCTCCAGCTACGAGTGCACAAGAAGATCTACATTACTACATG
GGCATGAGCATCAAGCGATGGATGGGCTTCATGGAAATATGTAGAAAGTT
TCGCACATGCTGTGAATCATATTATTTGTTACCTATCGGCTCGTGCAACT
GCGTAGCAAACTCTTAA

protein sequence of rna2952

>rna2952-protein ID=rna2952-protein|Name=rna2952|organism=Nannochloropsis gaditana|type=polypeptide|length=870bp
MSTGKYCFDTSNFSSELFDPAALATSVTEVASLEVLRDHLQGYQRDVREE
LYQVINRDLADYLNLSSRLSGIDAEVLEIRAPLNEIVRHVRQTRDFAAMK
RQILLNRLEERTQLENRKAILEKRVRFLCTLRGADNFLAMSGSIFDSGII
SFNGSAKAKGFVHDPREGIGPSELVEHCKVLESISQALVSLMANIHCFPK
SEEEDGMPTAQDMGLRLLHVEKKLLLRLGTIFRSVICPEDLIIPLDLDEE
RESSSERKYYVSVNEKALRHCLRAYNALGRGGEAEKHIARMIMLPFVESN
FTQSRLDGGARGSCSGLTKIYLACMRYVQRNLRQVLIIGEECAHPIAESS
TCWADALDPRYPCLDFVCNSVWRPVQQALCCRLASIFAPGIASILHTNYV
ASMTFLDELATLTGPENTDRLRARILSHDVTKEFQSRWNLSVYFHLRFSE
ISSAVDRALDSALDVLRLMHTEENGEKGTNIQMTDLFRSGFYGSNMSGER
QDAYQPSFCNPIFSTVWCTILRLWDPDIFLLPLTARFFKLTLQLIGRFRL
WCKKVFDNYRIGETIMAANYEWGNNDTSNSPRANVETLVNISWDAWILCQ
TSAQKHIERHVLLGVHRASTLDRISTAASAVSFELADESAMKLQSSLQGG
LSEALLPFGALVRKGWQGITSHVVGQCVVILEAVHGITAQYRMTNKRPPE
RASPYVKKILGALRGFDVEERGKVPSFALEDPGWKVQVLEAVLIKYTEAS
QELLDSIEQMEDALRKRKQRSIKPMSISSENADRNDMGTSMAAQALSDSD
KIRLQLFLDVAHFSDEIRQVGIYDDPIKSCETYSRLLQKVSAARHLLAAD
CEVTLPKNVLVFLCSTIAHR

mRNA from alignment at CM002460.1:340255..343183+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2952 ID=rna2952|Name=rna2952|organism=Nannochloropsis gaditana|type=mRNA|length=2929bp|location=Sequence derived from alignment at CM002460.1:340255..343183+ (Nannochloropsis gaditana)
CCCCTCCGTGGGAAGAAAACGCGAGTTCACTTTGATGGAGCATCCTGAAG
CTTCTCAATAAACGGAAGTTTGTACAGACGGCTGTTCACCAGATACAAAG
ACATTGTGCCCCGCTTGTTCTTCAGGTTTCTCAATtagttttccttcctt
ttaTGTTTACATCACATACCAACCACGCCATCCAAGGTCGCCATGAGCAC
TGGAAAGTATTGTTTTGACACAAGTAATTTCTCTAGTGAGCTATTTGACC
CTGCTGCTCTTGCAACGTCAGTTACAGAAGTCGCATCCTTGGAGGTTCTC
AGAGATCACTTGCAGGGTTACCAGCGCGATGTGAGGGAAGAGCTTTATCA
AGTCATCAACCGGGACCTGGCAGATTATCTTAACTTATCTTCTCGCCTCT
CTGGCATTGACGCAGAAGTCTTAGAAATCCGCGCTCCACTCAATGAGATT
GTTCGGCACGTCCGTCAAACCCGCGACTTCGCAGCGATGAAGCGTCAAAT
CCTGCTCAATCGTTTAGAGGAGCGAACACAACTCGAGAATAGGAAAGCGA
TACTCGAGAAGCGAGTCAGATTCTTATGTACACTTAGAGGTGCAGATAAT
TTTCTGGCGATGTCAGGCAGCATTTTTGATAGTGGCATAATTAGCTTCAA
TGGTTCAGCGAAAGCAAAGGGATTCGTGCATGatccgagggagggcatcg
GACCTTCTGAATTAGTGGAACATTGCAAGGTTCTGGAAAGCATTTCTCAG
GCATTGGTATCTTTGATGGCAAATATCCATTGCTTTCCAaaaagtgagga
agaggatggcatGCCGACTGCGCAAGACATGGGtttgcgcctcctccatg
tcgaAAAAAAACTGCTGCTGCGTCTGGGGACGATTTTTCGCTCTGTGATT
TGTCCTGAGGACCTGATTATTCCGCTAGACCTTGATGAGGAGCGAGAAAG
CTCCTCAGAAAGAAAATATTATGTTTCTGTCAATGAGAAGGCATTGCGAC
ACTGTCTTAGGGCTTACAACGCTCTCGGCCGCGGTGGCGAAGCAGAAAAG
CATATTGCCCGCATGATTATGTTGCCTTTTGTAGAGTCAAACTTTACGCA
GAGTCGCTTAGACGGTGGGGCTAGAGGATCATGTTCTGGGCTGACGAAAA
TCTATTTAGCATGCATGCGCTACGTGCAACGAAATCTTCGGCAGGTCCTG
ATAATTGGGGAAGAATGTGCTCATCCCATCGCGGAATCCTCGACATGCTG
GGCGGATGCCCTTGATCCTCGATATCCTTGCCTGGACTTTGTATGCAATT
CTGTGTGGAGACCTGTTCAACAGGCACTTTGTTGCCGACTGGCTTCAATT
TTTGCCCCTGGAATTGCAAGTATCCTGCACACGAATTATGTCGCCTCTAT
GACTTTCCTGGATGAGCTCGCCACGCTGACGGGCCCGGAGAATACTGATA
GACTACGCGCGCGGATATTATCGCATGATGTCACCAAGGAATTTCAAAGC
CGATGGAATCTGTCTGTGTATTTTCATTTACGCTTCAGTGAAATATCTTC
GGCTGTCGATCGAGCCTTGGATTCGGCACTAGATGTCCTGCGGTTGATGC
ATACAGAAGAAAATGGCGAAAAAGGCACCAATATTCAGATGACAGATCTC
TTTAGATCAGGTTTTTATGGTAGCAACATGTCGGGGGAACGGCAAGATGC
ATACCAACCAAGCTTCTGTAATCCTATTTTTTCGACTGTCTGGTGCACTA
TCCTGAGACTTTGGGATCCTGATATCTTTCTTCTGCCCTTAACTGCACGG
TTTTTTAAGCTTACTCTGCAACTCATCGGTCGCTTTCGCCTGTGGTGCAA
AAAAGTTTTCGATAACTATCGTATTGGGGAAACAATAATGGCAGCAAATT
ACGAATGGGGCAACAACGATACAAGTAATAGTCCTCGCGCCAATGTCGAG
ACTTTAGTCAACATCTCTTGGGATGCTTGGATTCTTTGTCAGACGTCAGC
TCAAAAACATATTGAAAGACATGTTCTACTTGGAGTGCATCGAGCAAGTA
CTTTGGACCGAATTTCTACCGCAGCTTCAGCAGTTTCTTTTGAATTGGCG
GACGAAAGCGCTATGAAGCTTCAATCTTCTCTGCAAGGGGGCCTCTCTGA
AGCCTTGCTTCCATTTGGGGCTCTGGTCCGGAAGGGGTGGCAGGGGATCA
CTTCCCACGTTGTTGGACAGTGCGTGGTGATTTTGGAAGCAGTACACGGT
ATTACCGCACAGTATCGCATGACCAACAAGCGACCCCCGGAACGGGCATC
TCCCTATGTGAAAAAAATTCTGGGAGCACTCCGCGGGTTTGATGTGGAAG
AGCGTGGAAAAGTCCCGTCTTTTGCACTTGAAGATCCAGGATGGAAAGTC
CAGGTTTTGGAAGCGGTTTTGATTAAATACACAGAGGCCTCTCAGGAACT
ACTTGATTCCATAGAACAAATGGAGGACGCTCTCAGAAAGCGAAAACAAC
GCAGCATCAAGCCCATGAGCATTTCATCCGAGAATGCGGACCGCAATGAT
ATGGGCACATCAATGGCGGCACAGGCGCTTTCAGATTCCGACAAGATAAG
ATTACAACTTTTCTTAGATGTTGCGCATTTTTCGGACGAGATAAGGCAGG
TTGGAATCTACGATGATCCCATAAAAAGCTGTGAGACTTACTCTCGCCTC
TTACAGAAGGTGAGCGCAGCTAGACACCTTTTGGCTGCTGATTGTGAAGT
CACGCTGCCGAAGAATgtgctcgtcttcctctgctcGACCATTGCACATA
GATGATGTTTTCTACACAATTCATGTATGATGAAGGACTACCATGATGGA
TGATGTTGCTGGAGTAAGCATTTGACCAAGTAGCAGATAGCAGCCCACTA
AAATGGCGAAAAAAATGAGATCATTTCCG

Coding sequence (CDS) from alignment at CM002460.1:340255..343183+

>rna2952 ID=rna2952|Name=rna2952|organism=Nannochloropsis gaditana|type=CDS|length=2613bp|location=Sequence derived from alignment at CM002460.1:340255..343183+ (Nannochloropsis gaditana)
ATGAGCACTGGAAAGTATTGTTTTGACACAAGTAATTTCTCTAGTGAGCT
ATTTGACCCTGCTGCTCTTGCAACGTCAGTTACAGAAGTCGCATCCTTGG
AGGTTCTCAGAGATCACTTGCAGGGTTACCAGCGCGATGTGAGGGAAGAG
CTTTATCAAGTCATCAACCGGGACCTGGCAGATTATCTTAACTTATCTTC
TCGCCTCTCTGGCATTGACGCAGAAGTCTTAGAAATCCGCGCTCCACTCA
ATGAGATTGTTCGGCACGTCCGTCAAACCCGCGACTTCGCAGCGATGAAG
CGTCAAATCCTGCTCAATCGTTTAGAGGAGCGAACACAACTCGAGAATAG
GAAAGCGATACTCGAGAAGCGAGTCAGATTCTTATGTACACTTAGAGGTG
CAGATAATTTTCTGGCGATGTCAGGCAGCATTTTTGATAGTGGCATAATT
AGCTTCAATGGTTCAGCGAAAGCAAAGGGATTCGTGCATGatccgaggga
gggcatcgGACCTTCTGAATTAGTGGAACATTGCAAGGTTCTGGAAAGCA
TTTCTCAGGCATTGGTATCTTTGATGGCAAATATCCATTGCTTTCCAaaa
agtgaggaagaggatggcatGCCGACTGCGCAAGACATGGGtttgcgcct
cctccatgtcgaAAAAAAACTGCTGCTGCGTCTGGGGACGATTTTTCGCT
CTGTGATTTGTCCTGAGGACCTGATTATTCCGCTAGACCTTGATGAGGAG
CGAGAAAGCTCCTCAGAAAGAAAATATTATGTTTCTGTCAATGAGAAGGC
ATTGCGACACTGTCTTAGGGCTTACAACGCTCTCGGCCGCGGTGGCGAAG
CAGAAAAGCATATTGCCCGCATGATTATGTTGCCTTTTGTAGAGTCAAAC
TTTACGCAGAGTCGCTTAGACGGTGGGGCTAGAGGATCATGTTCTGGGCT
GACGAAAATCTATTTAGCATGCATGCGCTACGTGCAACGAAATCTTCGGC
AGGTCCTGATAATTGGGGAAGAATGTGCTCATCCCATCGCGGAATCCTCG
ACATGCTGGGCGGATGCCCTTGATCCTCGATATCCTTGCCTGGACTTTGT
ATGCAATTCTGTGTGGAGACCTGTTCAACAGGCACTTTGTTGCCGACTGG
CTTCAATTTTTGCCCCTGGAATTGCAAGTATCCTGCACACGAATTATGTC
GCCTCTATGACTTTCCTGGATGAGCTCGCCACGCTGACGGGCCCGGAGAA
TACTGATAGACTACGCGCGCGGATATTATCGCATGATGTCACCAAGGAAT
TTCAAAGCCGATGGAATCTGTCTGTGTATTTTCATTTACGCTTCAGTGAA
ATATCTTCGGCTGTCGATCGAGCCTTGGATTCGGCACTAGATGTCCTGCG
GTTGATGCATACAGAAGAAAATGGCGAAAAAGGCACCAATATTCAGATGA
CAGATCTCTTTAGATCAGGTTTTTATGGTAGCAACATGTCGGGGGAACGG
CAAGATGCATACCAACCAAGCTTCTGTAATCCTATTTTTTCGACTGTCTG
GTGCACTATCCTGAGACTTTGGGATCCTGATATCTTTCTTCTGCCCTTAA
CTGCACGGTTTTTTAAGCTTACTCTGCAACTCATCGGTCGCTTTCGCCTG
TGGTGCAAAAAAGTTTTCGATAACTATCGTATTGGGGAAACAATAATGGC
AGCAAATTACGAATGGGGCAACAACGATACAAGTAATAGTCCTCGCGCCA
ATGTCGAGACTTTAGTCAACATCTCTTGGGATGCTTGGATTCTTTGTCAG
ACGTCAGCTCAAAAACATATTGAAAGACATGTTCTACTTGGAGTGCATCG
AGCAAGTACTTTGGACCGAATTTCTACCGCAGCTTCAGCAGTTTCTTTTG
AATTGGCGGACGAAAGCGCTATGAAGCTTCAATCTTCTCTGCAAGGGGGC
CTCTCTGAAGCCTTGCTTCCATTTGGGGCTCTGGTCCGGAAGGGGTGGCA
GGGGATCACTTCCCACGTTGTTGGACAGTGCGTGGTGATTTTGGAAGCAG
TACACGGTATTACCGCACAGTATCGCATGACCAACAAGCGACCCCCGGAA
CGGGCATCTCCCTATGTGAAAAAAATTCTGGGAGCACTCCGCGGGTTTGA
TGTGGAAGAGCGTGGAAAAGTCCCGTCTTTTGCACTTGAAGATCCAGGAT
GGAAAGTCCAGGTTTTGGAAGCGGTTTTGATTAAATACACAGAGGCCTCT
CAGGAACTACTTGATTCCATAGAACAAATGGAGGACGCTCTCAGAAAGCG
AAAACAACGCAGCATCAAGCCCATGAGCATTTCATCCGAGAATGCGGACC
GCAATGATATGGGCACATCAATGGCGGCACAGGCGCTTTCAGATTCCGAC
AAGATAAGATTACAACTTTTCTTAGATGTTGCGCATTTTTCGGACGAGAT
AAGGCAGGTTGGAATCTACGATGATCCCATAAAAAGCTGTGAGACTTACT
CTCGCCTCTTACAGAAGGTGAGCGCAGCTAGACACCTTTTGGCTGCTGAT
TGTGAAGTCACGCTGCCGAAGAATgtgctcgtcttcctctgctcGACCAT
TGCACATAGATGA

Synonyms

Publications