rna2942, rna2942 (mRNA) Nannochloropsis gaditana

Overview
Namerna2942
Unique Namerna2942
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length219
Alignment locationCM002460.1:317081..317506 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100034g39.6321.mrna
Orig protein idgnl|cribi|Naga_100034g39.6321
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:317081..317506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100034g39gene2822Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2942rna2942-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27748.1cds2934Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2942 ID=rna2942|Name=rna2942|organism=Nannochloropsis gaditana|type=mRNA|length=219bp
ATGTATTACATTCCTAATTTAAGTCATTCCGCTGGCTTGTTTCGAGGATC
CTGGAATCAGCACGATCTTGCGGGTTGCGACGGAAAGGGTGCGGGGAATG
GAGGAATGCGGTGTTGCGAGAAAAATCGAAAAGACAAGAGCCTAGTTTCA
CAACATATTGTGTTTGAATCAAAAACGGCTAACCGACTACTCGTCAGCCG
GGAAGACAGATTCAAGTAG
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protein sequence of rna2942

>rna2942-protein ID=rna2942-protein|Name=rna2942|organism=Nannochloropsis gaditana|type=polypeptide|length=96bp
MLPAPRHLRQPRHTRASVLQRGFDPFDPKEQMVQIPHVRFIFNSILRDTR
TETTVMERQGWAGGERRASTMENRTNIARRDREHRRRPTSSERFHS
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mRNA from alignment at CM002460.1:317081..317506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2942 ID=rna2942|Name=rna2942|organism=Nannochloropsis gaditana|type=mRNA|length=426bp|location=Sequence derived from alignment at CM002460.1:317081..317506- (Nannochloropsis gaditana)
ATGTTACCCGCTCCAAGACACCTGCGACAGCCCCGCCACACGCGCGCATC
AGTTCTTCAAAGAGGGTTCGACCCCTTTGACCCGAAAGAGCAAATGGTCC
AAATTCCTCACGTCCGCTTCATTTTCAATTCCATCCTCCGGGACACCCGC
ACGTGACGGCGTCTGCGGAAGCGAAGAAATCGGGTACTACGGTTGAAGAC
CAGGCGGAGGAAGAAGAAGCAGAGATGAAAGATGGCGAGGAGGGAATTAA
AGCCATGACATGAAGCGAATTATGACATTTTCCATAGGGAGACGACAGTG
ATGGAAAGGCAGGGATGGGCTGGAGGAGAAAGGCGTGCCTCTACTATGGA
GAATAGGACCAATATAGCACGAAGAGACAGGGAGCATAGAAGGCGTCCGA
CTTCTAGTGAACGCTTCCATTCATAA
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Coding sequence (CDS) from alignment at CM002460.1:317081..317506-

>rna2942 ID=rna2942|Name=rna2942|organism=Nannochloropsis gaditana|type=CDS|length=582bp|location=Sequence derived from alignment at CM002460.1:317081..317506- (Nannochloropsis gaditana)
GGAGACGACAGTGATGGAAAGGCAGGGATGGGCTGGAGGAGAAAGGCGTG
CCTCTACTATGGAGAATAGGACCAATATAGCACGAAGAGACAGGGAGCAT
AGAAGGCGTCCGACTTCTAGTGAACGCTTCCATTCATAAATGTTACCCGC
TCCAAGACACCTGCGACAGCCCCGCCACACGCGCGCATCAGTTCTTCAAA
GAGGGTTCGACCCCTTTGACCCGAAAGAGCAAATGGTCCAAATTCCTCAC
GTCCGCTTCATTTTCAATTCCATCCTCCGGGACACCCGCACGGAGACGAC
AGTGATGGAAAGGCAGGGATGGGCTGGAGGAGAAAGGCGTGCCTCTACTA
TGGAGAATAGGACCAATATAGCACGAAGAGACAGGGAGCATAGAAGGCGT
CCGACTTCTAGTGAACGCTTCCATTCATAAATGTTACCCGCTCCAAGACA
CCTGCGACAGCCCCGCCACACGCGCGCATCAGTTCTTCAAAGAGGGTTCG
ACCCCTTTGACCCGAAAGAGCAAATGGTCCAAATTCCTCACGTCCGCTTC
ATTTTCAATTCCATCCTCCGGGACACCCGCAC
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Synonyms
Publications