rna2940, rna2940 (mRNA) Nannochloropsis gaditana

Overview
Namerna2940
Unique Namerna2940
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1011
Alignment locationCM002460.1:316311..316735 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100034g41.6323.mrna
Orig protein idgnl|cribi|Naga_100034g41.6323
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:316311..316735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100034g41gene2820Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2940rna2940-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27750.1cds2932Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2940 ID=rna2940|Name=rna2940|organism=Nannochloropsis gaditana|type=mRNA|length=1011bp
ATGCCGAAAAAATGGCATTGCTATGAGAAGACAAGGGCGTGGTCTTTAGC
TTTTCCCTCCATATTACTTCTTCTGTTCGTCTCACAACTTTGGTGGCACT
TCGATGACATCACTTGTACCGGGAGGAGCTCAATTAATGGAAAATGTACC
ACTCGCTTAGCCAATGCAATCTTAGAAAAAGAAATCTGGCAAGACGTGGA
GAATGATTCACCGGACAAAGACATGCATTTGGCGTCTCCAACAGCTCATT
TGAAGACTGAGTTTCAAGTGGCGAGCCCAGGTTATCCCCACGGCATTCTA
GAATACGTAACAAAAACCCACAACGGTGAGAAAGCTGTCACGGAATCCTT
TCATCACATCATTGCTGCCACGAAGTGCAATGGTCTGGTACTTGATATTG
GGGCGAACACTGGCTTCTACAGTATGCTTACGCTTTCCGAGGGCTGCAAG
CATGTTGTCTCATTTGATCCGCAGCCAAGCTGTGTGCGCCACATCGAACA
TGGGCTGGTCAAAAACGACTTTAAACATGGGGCGATAGTGCCACGGCCCG
TTGATTACGTATCCGGTCGAACGCTTGAGCTTAACCCGAAATATGACTGC
GCAGGACGGTGGCCCGTGCTACAGCATGAAGGTAAAGCACCTGACCCAGC
TGATCTAATAAAGGTTGAAACAGTCACTTTAACAGAAACCTTGCCGTACA
ACAGTTACATATCGTTGGCCAAAGTGGATACGGAAGGAGCTGAATATAGG
GTTTTGCTGGCCATGATGCCTTTTGACCGACAAGGTGTTATCGATCAATT
CGTTTCTCTCGTGAGGGATCATGGCTTCAGCTGCCGGCCATTGGAAATCT
TCCCTTGGGCTGCCAATGATTTCTACACGAAAGAAAACGTGACTGGCTTA
GCCAAGAGGATCGACTCCGCCGTGCAATTGAATATCTGTTTCATTACAAT
TAGATTCAATACGGAGCAAATTGGCAGTGATGGAATTAGGTTAACATATT
GCCTCGTATAA
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protein sequence of rna2940

>rna2940-protein ID=rna2940-protein|Name=rna2940|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MSTCFCLFKTRRRELGPFLMHERRPSKTCSNIFSKSSEIQEQSLGRARGR
ALSDGIFRVFGGGLDETDASLAGKNNVKLVTFSLFFYRKTPVSSSLFYHS
MSFPL
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mRNA from alignment at CM002460.1:316311..316735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2940 ID=rna2940|Name=rna2940|organism=Nannochloropsis gaditana|type=mRNA|length=425bp|location=Sequence derived from alignment at CM002460.1:316311..316735- (Nannochloropsis gaditana)
ATGAGTACTTGCGTGCTTATACTGAAGAAAATTTAAGGGTACTCGTTGTA
TTCAAAGCCACTAGTTTTGTCTCTTTAAAACTCGGAGACGCGAACTCGGC
CCATTTCTGATGCATGAGAGGCGGCCCAGCAAAACTTGTTCAAATATTTT
CTCTAAGTCTAGCGAAATGTCCAAAGGCGGAGCTCTTTAATTGATTTGTC
CTGTTCTTCCCAAAAATACCAAGTCAAGAGCAAAGTCTTGGACGAGCTCG
TGGACGAGCTCTAAGTGACGGGATTTTCCGGGTATTCGGGGGAGGCTTAG
ACGAAACAGATGCTTCCCTTGCAGGAAAGAACAATGTGAAGTTGGTTACA
TTCTCCTTGTTCTTCTACAGGAAGACGCCGGTCTCTTCTTCCTTGTTTTA
TCACTCAATGAGCTTTCCTTTATGA
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Coding sequence (CDS) from alignment at CM002460.1:316311..316735-

>rna2940 ID=rna2940|Name=rna2940|organism=Nannochloropsis gaditana|type=CDS|length=954bp|location=Sequence derived from alignment at CM002460.1:316311..316735- (Nannochloropsis gaditana)
TCAAGAGCAAAGTCTTGGACGAGCTCGTGGACGAGCTCTAAGTGACGGGA
TTTTCCGGGTATTCGGGGGAGGCTTAGACGAAACAGATGCTTCCCTTGCA
GGAAAGAACAATGTGAAGTTGGTTACATTCTCCTTGTTCTTCTACAGGAA
GACGCCGGTCTCTTCTTCCTTGTTTTATCACTCAATGAGCTTTCCTTTAT
GATTTTGTCTCTTTAAAACTCGGAGACGCGAACTCGGCCCATTTCTGATG
CATGAGAGGCGGCCCAGCAAAACTTGTTCAAATATTTTCTCTAAGTCTAG
CGAAATATGAGTACTTGCTCAAGAGCAAAGTCTTGGACGAGCTCGTGGAC
GAGCTCTAAGTGACGGGATTTTCCGGGTATTCGGGGGAGGCTTAGACGAA
ACAGATGCTTCCCTTGCAGGAAAGAACAATGTGAAGTTGGTTACATTCTC
CTTGTTCTTCTACAGGAAGACGCCGGTCTCTTCTTCCTTGTTTTATCACT
CAATGAGCTTTCCTTTATGATTTTGTCTCTTTAAAACTCGGAGACGCGAA
CTCGGCCCATTTCTGATGCATGAGAGGCGGCCCAGCAAAACTTGTTCAAA
TATTTTCTCTAAGTCTAGCGAAATATGAGTACTTGCTCAAGAGCAAAGTC
TTGGACGAGCTCGTGGACGAGCTCTAAGTGACGGGATTTTCCGGGTATTC
GGGGGAGGCTTAGACGAAACAGATGCTTCCCTTGCAGGAAAGAACAATGT
GAAGTTGGTTACATTCTCCTTGTTCTTCTACAGGAAGACGCCGGTCTCTT
CTTCCTTGTTTTATCACTCAATGAGCTTTCCTTTATGATTTTGTCTCTTT
AAAACTCGGAGACGCGAACTCGGCCCATTTCTGATGCATGAGAGGCGGCC
CAGCAAAACTTGTTCAAATATTTTCTCTAAGTCTAGCGAAATATGAGTAC
TTGC
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Synonyms
Publications