rna2936, rna2936 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2936
Unique Name	rna2936
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1767
Alignment location	CM002460.1:312014..314462 +

Link to JBrowse

Properties


Property Name	Value
Product	tetratricopeptide repeat family protein
Orig transcript id	gnl\|cribi\|Naga_100034g44.6297.mrna
Orig protein id	gnl\|cribi\|Naga_100034g44.6297
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:312014..314462 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g44	gene2817	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2936	rna2936-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27724.1	cds2928	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:312014..314462+
coding sequence from alignment at CM002460.1:312014..314462+

mRNA sequence

>rna2936 ID=rna2936|Name=rna2936|organism=Nannochloropsis gaditana|type=mRNA|length=1767bp
ACGACAGGCGCGGTGTTGTCATAATTTACAAGTAGGGCGAACCAAAATTT
CCTCTCCACAACGTCAACATCAACCAGCCCACGACGAGAAAAAGCTCAGA
TCGCCGCACCCGTCAGATTGAGGCAATTCCGATTTTAAAAATCCGACGGT
TTTTCATCAACATTCAACAGATATAGATCAAAGTTGTCTCCATGGTGAAG
CGCTTGATAGCTTTGGGGCTCGCGTGTGGAGGCCTGGGGGCCGTGCGGGC
TTTTGCACCCTTGTCGTCATGCCTTGCACGATCGCCCGAGTCCAGCCTCA
AGGACGAAGTTTGGCATGGAAGACGGAAGCCCTTCTCCTTATTTTCGATT
GCGAGCTGTAGAAACGAGCGACCCATCGGTTGGAAAAGTCCTGCGCCTGG
TGGTGGCCTTCACTGGCGCTCAGGTGGGGCAGGCAATGGCGGGGTGGGAG
ATGGAGGAAACGGCGGGGGCGGGGGAGCCTCGGGGTGGTCGAAGGAAGGC
AACGGGGACGACGGCGACGGAGAGGGGAGCGTGACACTGCCCCAGGACGT
GTCGGAATTACTGGCCAAGGCTGGGCGAAAATTTACGGAGCTCCCGACCT
CCACACAAAAGGCCCTGATGGCAGGCAGCATGACCTCGGCCCTCCTGAAG
CGCTACCTGGAAGTAGAGAGGAGGGGCGGCATGGTGGCGCAGTTGCTCGG
CATAAGCATCTTTCGGGATCGGCTGTTAATGGATGTCTACCTCATGGACA
AGATTGGCATAGAAATGGCCGTGGGAGCTGTCGCGCAAAGCCTAGCTGAA
TGGGATCGACGTCGTGAGAAGCTTTTCAACGAGTTGGACTTCGCTTTTGC
CGATCTCCTTACCTGTTTGGTATCCAATTTTGCGGCGGTCCTCATAGCAG
CCCCATCTGCGGCGGGCGCCGCAGCCTCCAATGCTGCTCGCAACATCCCC
GCCAACATGTTCCAGATGGTGCCTCCCGGGACCAGGCCCTACGCGCTCTC
CGACCGCCTGGTTTGCCCCTTTTTGAAAATGCCCACGCTTTTCGTGGTGG
GCTTAGCAGCTTCTCTCCTTGGATTCGGAACGACTAGCATCCTCACGTTA
CTGCGTAAGCAGCTCCATTCCAAGCCTACTCAATCCTCCCCGATTGCACC
ATTGATAGCCTCGGCGACGGGAGCTGCTGAAGAAACAGCACAAGAGGATG
TCGTTCAAAAAATTCCAGTGATTAAGACCTCTCTGGCGGTGGGTGTATTT
CTGGCTGTGTCCACCAACGTACGGTACCAGCTTGTCTCGGGCGTGTTCGA
AGAAAGGGGAATCGCCAGATACTTGGCTCATAACAAACTCGCAGATCACC
TAGCTTCCTTTGGGGTACGAGCGTGCAACACCTTTGTGGGGTCAGGGCAA
ATGATCGACTACCTGAAGTTCCTAAAACTGCAAGAATAAGGAAAAGGATC
GCTGCCCACCCCCAAATATTCAGAAAGGTCGAGGAATCCAAAGTAGAAGC
ATAGGCGAGTGGTGACGTAATTTTTGGGTTGAGACGGAAGATTGGAAAAG
GATGAGAGATCTACATGCTTGCTGGAGTGCATGTACATACCTTTTGGCCA
GCCAAGAACGAGGGTCCGATAAAAAGGGTATACCAGCTCATGCATTTATT
ATTTACGAGTAGAGAGAAGCTACGATGAACGTAGTAATGTGTAAGGCTTT
GAAATGAGCACGGTAGCAAATCGGCATTTGAAATTCGAAGAAAGAAAAAA
TCTTGAGTAAACAAATT

protein sequence of rna2936

>rna2936-protein ID=rna2936-protein|Name=rna2936|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MRSLICSLLKGHNTQCQGTRLVASGSLWSTRMPVFALMIGSCTSASILLN
SPRASHVQHRLFLSSCHRSFRKETECEADLEDVDKMRNLDVRQPSMETEK
DAEANKGGKMEALALFESAEATLREVLVIRAQLLEDDDPALLTTRSNLAS
ILQRTGRGVEAEEMMRTTISRVQEKARGKASPEVATAMNNLGYLLKEEGR
LGESRALYKEALRIRRALYPKEHPLVIVSLNNLAELCLVTPGLEGEGRAL
QDEILKLLNPVRRDGDGSKSVGMIHEEKPN

mRNA from alignment at CM002460.1:312014..314462+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2936 ID=rna2936|Name=rna2936|organism=Nannochloropsis gaditana|type=mRNA|length=2449bp|location=Sequence derived from alignment at CM002460.1:312014..314462+ (Nannochloropsis gaditana)
ACAAGGGTGCAAAAGCCCGCACGGCCCCCAGGCCTCCACACGCGAGCCCC
AAAGCTATCAAGCGCTTCACCATGGAGACAACTTTGATCTATATCTGTTG
AATGTTGATGAAAAACCGTCGGATTTTTAAAATCGGAATTGCCTCAATCT
GACGGGTGCGGCGATCTGAGCTTTTTCTCGTCGTGGGCTGGTTGATGTTG
ACGTTGTGGAGAGGAAATTTTGGTTCGCCCTACTTGTAAATTATGACAAC
ACCGCGCCTGTCGTCATCATACGTCATGTTCTTGACAACACAATCTAAGC
AGGTCATAAGCAGGCAGTTGAGCGTCTCAAAGGGTCCATGAGGAGTCTGA
TTTGTAGCCTCCTCAAGGTGGGTGGGAGTCCTCTTCAGGGGTTCGGTtgg
ccctcccctcatcaCATTCAATCCACCATCCACCTATTTCCGTCCTCCAG
GGGCACAATACGCAATGCCAGGGGACGCGGTTGGTCGCTTCTGGAAGTTT
GTGGTCGACGAGAATGCCTGTCTTCGCCCTTATGATTGGTTCGTGTACGT
CAGCCTCCATACTGCTCAATTCACCACGGGCCAGCCACGTCCAACACCGC
CTTTTTCTCTCAAGCTGTCACAGATCATTTAGAAAAGAGACAGAGTGTGA
GGCAGATTTGGAAGATGTGGATAAGATGAGGAATCTCGATGTTCGACAGC
CCAGTATGGAGACGGAAAAAGATGTAGGTCTGGCTTTAAGGGAGGTTCAG
GATTTGTACAAAGAAGGTAAATACACCGAGGCCCTCCAGGTGTCTTTGGG
TATGAAAGATTGGCTAGAGCGGGAACTGGGTGAGGATCATCCTGTTTACG
CGTCTTGTTTAAATAATGTTGCCTTGATGCATAAGATGACGAATGAattg
gaggacgcggtccaTTACTATGCCATGGCGCTTGACACGTACAAGCGGAG
TGTGGGCGTCAATCATCGATCATATGCCACCGCGCTAAATAATTTAGGGC
TGGTTTTCTTGATGCAAGCTCAGCAGGCAGAGGCAAataaggggggaaag
atggAGGCATTGGCTCTCTTTGAAAGCGCGGAAGCCACCTTGCGCGAAGT
TCTCGTCATCCGCGCTCAGCTCCTAGAAGACGACGACCCTGCGCTCTTAA
CAACACGCAGCAATCTTGCCTCCATCCTGCAGCGCACAGGCCGAGGGgtt
gaggcggaggagatgatgcGCACGACGATATCTCGggtgcaggagaaggc
gcgAGGGAAGGCGTCTCCCGAGGTGGCCACGGCGATGAACAACTTGGGCT
ACttgctcaaggaggagggacgactGGGGGAGTCCCGAGCGCTCTATAAA
GAAGCCTTGCGGATTCGGAGAGCCTTGTATCCGAAAGAACACCCCCTTGT
CATCGTCTCTCTCAACAACCTTGCCGAGCTCTGTCTGGTCACCCCGGGGC
ttgaaggcgaaggaagggcgcTTCAGGACGAGATTTTGAAACTTTTGAAC
CCGGTAAGGCGTGATGGCGATGGAAGCAAGAGCGTAGGTATGATACACGA
GGAAAAGCCAAATTGAGTACCTCATCCGAAAAGGAATGCCAGGGCCCAGT
TCGATCTGCGCTGCTGTGCTTTGAACACGCACGTATCCTGCTGCTTTTGC
CCTTCTTTTGGTTGTGGAGGAGGTATCAGGGCTTTGTAGCAAAATTCTAT
TTTGAATTTTTCACATGCGGCATTTCACTCGTTTTTCAGCTGTTCTGTCA
CGATAGGTTTTGAAATAGGAGAACGTTAAATGATTCTGTCAACGTGATAT
AACGCCTCTTACTATTATAATTTGATCCGATGAAATGTACGACTGTTAAG
ACACATCCATGCAAACTCAAATCATCTGTTCTGTTTGCCTCGTAAGAGCA
GTTTGATGCGTAGTCCGAAAATTGAGTCTCTACGACTTGGTCGATAAGCC
TCTGAACTCAAGGTTGAGAGAGCACTTCCGGACAAGTCCATCTCTGGAAC
CAtttactccctccctccctccctctctccctccctcaccgctTTTAACT
GGAGTTGCTTCCGCGGTGCGCGTCTTTCCATGCGTATCCAGTGTCAAGTA
GTTTAACGAATGAAGTTCGTGGCTTATAAAGGAAAGCTCATTGAGTGAta
aaaaaaagggaaggaggaagagaccgGCGTCTTCCTGtagaagaacaagg
agaatGTAACCAATTTCACATTGTTCTTTCCTGCAAGAGAGGCATCTGTT
TCGTCTAAGCCTCCCCCGAATACCCGGAAAATCCCGTCACTTAGAGCTCG
TCCACGAGCTCGTCCAAGACTTTGCTCTTGACTTGGTATTTTTGGGAAGA
ACAGAACAAATCAATTAAAGAGCTTCGCCTTTGGACATTTTGCTAGACTT
AGAGAAAATATTTGAACAAGTTTTGCTGGGCCGCCTCTCATGCATCAGA

Coding sequence (CDS) from alignment at CM002460.1:312014..314462+

>rna2936 ID=rna2936|Name=rna2936|organism=Nannochloropsis gaditana|type=CDS|length=2529bp|location=Sequence derived from alignment at CM002460.1:312014..314462+ (Nannochloropsis gaditana)
ATGAGGAGTCTGATTTGTAGCCTCCTCAAGGGGCACAATACGCAATGCCA
GGGGACGCGGTTGGTCGCTTCTGGAAGTTTGTGGTCGACGAGAATGCCTG
TCTTCGCCCTTATGATTGGTTCGTGTACGTCAGCCTCCATACTGCTCAAT
TCACCACGGGCCAGCCACGTCCAACACCGCCTTTTTCTCTCAAGCTGTCA
CAGATCATTTAGAAAAGAGACAGAGTGTGAGGCAGATTTGGAAGATGTGG
ATAAGATGAGGAATCTCGATGTTCGACAGCCCAGTATGGAGACGGAAAAA
GATGCAGAGGCAAataaggggggaaagatggAGGCATTGGCTCTCTTTGA
AAGCGCGGAAGCCACCTTGCGCGAAGTTCTCGTCATCCGCGCTCAGCTCC
TAGAAGACGACGACCCTGCGCTCTTAACAACACGCAGCAATCTTGCCTCC
ATCCTGCAGCGCACAGGCCGAGGGgttgaggcggaggagatgatgcGCAC
GACGATATCTCGggtgcaggagaaggcgcgAGGGAAGGCGTCTCCCGAGG
TGGCCACGGCGATGAACAACTTGGGCTACttgctcaaggaggagggacga
ctGGGGGAGTCCCGAGCGCTCTATAAAGAAGCCTTGCGGATTCGGAGAGC
CTTGTATCCGAAAGAACACCCCCTTGTCATCGTCTCTCTCAACAACCTTG
CCGAGCTCTGTCTGGTCACCCCGGGGCttgaaggcgaaggaagggcgcTT
CAGGACGAGATTTTGAAACTTTTGAACCCGGTAAGGCGTGATGGCGATGG
AAGCAAGAGCGTAGGTATGATACACGAGGAAAAGCCAAATTGAATGAGGA
GTCTGATTTGTAGCCTCCTCAAGGGGCACAATACGCAATGCCAGGGGACG
CGGTTGGTCGCTTCTGGAAGTTTGTGGTCGACGAGAATGCCTGTCTTCGC
CCTTATGATTGGTTCGTGTACGTCAGCCTCCATACTGCTCAATTCACCAC
GGGCCAGCCACGTCCAACACCGCCTTTTTCTCTCAAGCTGTCACAGATCA
TTTAGAAAAGAGACAGAGTGTGAGGCAGATTTGGAAGATGTGGATAAGAT
GAGGAATCTCGATGTTCGACAGCCCAGTATGGAGACGGAAAAAGATGCAG
AGGCAAataaggggggaaagatggAGGCATTGGCTCTCTTTGAAAGCGCG
GAAGCCACCTTGCGCGAAGTTCTCGTCATCCGCGCTCAGCTCCTAGAAGA
CGACGACCCTGCGCTCTTAACAACACGCAGCAATCTTGCCTCCATCCTGC
AGCGCACAGGCCGAGGGgttgaggcggaggagatgatgcGCACGACGATA
TCTCGggtgcaggagaaggcgcgAGGGAAGGCGTCTCCCGAGGTGGCCAC
GGCGATGAACAACTTGGGCTACttgctcaaggaggagggacgactGGGGG
AGTCCCGAGCGCTCTATAAAGAAGCCTTGCGGATTCGGAGAGCCTTGTAT
CCGAAAGAACACCCCCTTGTCATCGTCTCTCTCAACAACCTTGCCGAGCT
CTGTCTGGTCACCCCGGGGCttgaaggcgaaggaagggcgcTTCAGGACG
AGATTTTGAAACTTTTGAACCCGGTAAGGCGTGATGGCGATGGAAGCAAG
AGCGTAGGTATGATACACGAGGAAAAGCCAAATTGAATGAGGAGTCTGAT
TTGTAGCCTCCTCAAGGGGCACAATACGCAATGCCAGGGGACGCGGTTGG
TCGCTTCTGGAAGTTTGTGGTCGACGAGAATGCCTGTCTTCGCCCTTATG
ATTGGTTCGTGTACGTCAGCCTCCATACTGCTCAATTCACCACGGGCCAG
CCACGTCCAACACCGCCTTTTTCTCTCAAGCTGTCACAGATCATTTAGAA
AAGAGACAGAGTGTGAGGCAGATTTGGAAGATGTGGATAAGATGAGGAAT
CTCGATGTTCGACAGCCCAGTATGGAGACGGAAAAAGATGCAGAGGCAAa
taaggggggaaagatggAGGCATTGGCTCTCTTTGAAAGCGCGGAAGCCA
CCTTGCGCGAAGTTCTCGTCATCCGCGCTCAGCTCCTAGAAGACGACGAC
CCTGCGCTCTTAACAACACGCAGCAATCTTGCCTCCATCCTGCAGCGCAC
AGGCCGAGGGgttgaggcggaggagatgatgcGCACGACGATATCTCGgg
tgcaggagaaggcgcgAGGGAAGGCGTCTCCCGAGGTGGCCACGGCGATG
AACAACTTGGGCTACttgctcaaggaggagggacgactGGGGGAGTCCCG
AGCGCTCTATAAAGAAGCCTTGCGGATTCGGAGAGCCTTGTATCCGAAAG
AACACCCCCTTGTCATCGTCTCTCTCAACAACCTTGCCGAGCTCTGTCTG
GTCACCCCGGGGCttgaaggcgaaggaagggcgcTTCAGGACGAGATTTT
GAAACTTTTGAACCCGGTAAGGCGTGATGGCGATGGAAGCAAGAGCGTAG
GTATGATACACGAGGAAAAGCCAAATTGA

Synonyms

Publications